Wall clock time and date at job start Fri Apr 10 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86792 * 120.00156 * 2 1 4 4 H 1.48504 * 109.47403 * 270.00304 * 3 2 1 5 5 H 1.48504 * 109.47275 * 29.99925 * 3 2 1 6 6 H 1.48502 * 109.47577 * 149.99848 * 3 2 1 7 7 C 1.39947 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99922 * 165.15078 * 7 2 1 9 9 C 1.41389 * 120.00133 * 345.14954 * 7 2 1 10 10 C 1.40731 * 120.24521 * 332.61056 * 9 7 2 11 11 C 1.37597 * 119.74595 * 179.97438 * 10 9 7 12 12 C 1.38659 * 120.24873 * 0.02562 * 11 10 9 13 13 C 1.38616 * 120.50096 * 359.68437 * 12 11 10 14 14 C 1.37633 * 120.24604 * 0.59797 * 13 12 11 15 15 S 1.76207 * 120.12935 * 179.70244 * 14 13 12 16 16 O 1.42101 * 106.39942 * 1.18403 * 15 14 13 17 17 O 1.42097 * 106.39776 * 228.26545 * 15 14 13 18 18 N 1.65603 * 107.21660 * 114.72436 * 15 14 13 19 19 C 1.47221 * 125.60787 * 90.00677 * 18 15 14 20 20 C 1.54520 * 105.47009 * 156.13570 * 19 18 15 21 21 H 1.08999 * 114.26280 * 159.22496 * 20 19 18 22 22 C 1.54723 * 108.37684 * 288.48468 * 20 19 18 23 23 N 1.47766 * 105.10188 * 143.64768 * 22 20 19 24 24 C 1.47457 * 108.45791 * 335.08059 * 23 22 20 25 25 C 1.53992 * 107.57866 * 2.20043 * 24 23 22 26 26 H 1.08997 * 113.12493 * 143.75383 * 25 24 23 27 27 C 1.46850 * 125.60703 * 269.99856 * 18 15 14 28 28 H 0.96999 * 120.00065 * 359.97438 * 1 2 3 29 29 H 1.07992 * 120.12826 * 359.95379 * 10 9 7 30 30 H 1.07997 * 119.87909 * 179.97438 * 11 10 9 31 31 H 1.08007 * 119.75203 * 179.97438 * 12 11 10 32 32 H 1.08002 * 119.87723 * 180.29821 * 13 12 11 33 33 H 1.08996 * 110.24976 * 37.13218 * 19 18 15 34 34 H 1.09000 * 110.31597 * 275.17333 * 19 18 15 35 35 H 1.08994 * 110.31442 * 24.74197 * 22 20 19 36 36 H 1.08994 * 110.31456 * 262.55366 * 22 20 19 37 37 H 1.00902 * 111.00194 * 212.88741 * 23 22 20 38 38 H 1.09001 * 109.83683 * 121.70782 * 24 23 22 39 39 H 1.09005 * 109.83474 * 242.69461 * 24 23 22 40 40 H 1.08998 * 109.79769 * 62.80051 * 27 18 15 41 41 H 1.09000 * 109.79277 * 301.95564 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2120 -0.0005 8 1 3.0609 -1.2276 -0.2403 9 6 1.3364 -2.4161 0.3127 10 6 0.2046 -2.3997 1.1490 11 6 -0.4414 -3.5776 1.4468 12 6 0.0191 -4.7776 0.9267 13 6 1.1293 -4.8050 0.0971 14 6 1.7945 -3.6397 -0.2095 15 16 3.2101 -3.6791 -1.2581 16 8 3.3896 -5.0363 -1.6390 17 8 4.2148 -2.9159 -0.6045 18 7 2.8199 -2.8533 -2.6395 19 6 3.0133 -1.4104 -2.8592 20 6 3.0953 -1.2343 -4.3921 21 1 2.8827 -0.2230 -4.7387 22 6 4.4449 -1.8142 -4.8782 23 7 4.1488 -2.4336 -6.1867 24 6 2.7184 -2.7902 -6.2214 25 6 2.0901 -2.3221 -4.8957 26 1 1.0723 -1.9498 -5.0123 27 6 2.2243 -3.4398 -3.8469 28 1 -0.4850 0.8400 0.0004 29 1 -0.1553 -1.4663 1.5558 30 1 -1.3099 -3.5675 2.0886 31 1 -0.4939 -5.6975 1.1659 32 1 1.4764 -5.7447 -0.3063 33 1 3.9400 -1.0785 -2.3912 34 1 2.1679 -0.8502 -2.4598 35 1 4.8082 -2.5657 -4.1773 36 1 5.1793 -1.0173 -4.9943 37 1 4.7277 -3.2453 -6.3418 38 1 2.2324 -2.2888 -7.0583 39 1 2.6088 -3.8701 -6.3215 40 1 1.2405 -3.8466 -3.6129 41 1 2.8696 -4.2302 -4.2302 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601342924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:42 Heat of formation + Delta-G solvation = -65.283762 kcal Electronic energy + Delta-G solvation = -26675.843169 eV Core-core repulsion = 23067.130347 eV Total energy + Delta-G solvation = -3608.712822 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.04011 -39.40790 -38.18897 -36.78139 -36.13477 -35.65441 -32.06952 -31.46781 -31.37983 -30.80469 -27.55473 -27.05640 -24.31309 -23.43429 -22.96583 -21.83213 -20.87550 -19.93051 -19.48488 -18.74810 -17.97555 -17.21523 -17.15618 -16.86421 -16.53265 -16.05742 -15.35499 -15.03328 -14.87874 -14.75725 -14.64921 -14.47367 -13.91185 -13.74632 -13.56101 -13.38416 -13.31663 -13.08126 -13.04483 -12.94224 -12.82207 -12.67427 -12.56328 -12.26315 -12.18427 -11.82301 -11.80173 -11.67082 -11.55932 -11.14756 -11.05396 -9.93421 -9.76565 -9.48087 -9.34838 -8.83741 -6.63312 -0.29577 0.50987 0.94639 1.37737 1.45891 1.52730 2.14925 2.23560 2.58475 2.93583 3.20335 3.29571 3.48962 3.59987 3.77242 3.84103 4.20104 4.27708 4.34648 4.36014 4.46165 4.51316 4.56969 4.65961 4.71992 4.76698 4.93856 4.97583 5.03045 5.07575 5.12560 5.15035 5.24123 5.27135 5.32567 5.50694 5.60165 5.70009 5.82491 5.88428 5.97484 6.10240 6.45819 6.48550 6.66801 6.80812 8.12414 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.007121 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.283711 B = 3931.316533 C = 5252.924755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.055 3.945 3 Si 0.955 3.045 4 H -0.238 1.238 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.487 4.487 8 H 0.104 0.896 9 C 0.164 3.836 10 C -0.186 4.186 11 C -0.076 4.076 12 C -0.253 4.253 13 C -0.017 4.017 14 C -0.802 4.802 15 S 2.734 3.266 16 O -1.007 7.007 17 O -0.997 6.997 18 N -1.002 6.002 19 C 0.123 3.877 20 C -0.097 4.097 21 H 0.128 0.872 22 C 0.050 3.950 23 N -0.683 5.683 24 C 0.057 3.943 25 C -0.108 4.108 26 H 0.114 0.886 27 C 0.123 3.877 28 H 0.298 0.702 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.088 0.912 37 H 0.345 0.655 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.138 1.200 -10.102 10.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.165 4.165 3 Si 0.774 3.226 4 H -0.161 1.161 5 H -0.186 1.186 6 H -0.188 1.188 7 C -0.515 4.515 8 H 0.121 0.879 9 C 0.160 3.840 10 C -0.206 4.206 11 C -0.095 4.095 12 C -0.273 4.273 13 C -0.037 4.037 14 C -0.896 4.896 15 S 2.834 3.166 16 O -0.998 6.998 17 O -0.987 6.987 18 N -0.840 5.840 19 C -0.002 4.002 20 C -0.118 4.118 21 H 0.146 0.854 22 C -0.079 4.079 23 N -0.312 5.312 24 C -0.072 4.072 25 C -0.129 4.129 26 H 0.132 0.868 27 C -0.002 4.002 28 H 0.109 0.891 29 H 0.132 0.868 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.107 0.893 37 H 0.161 0.839 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.717 1.492 -10.259 10.508 hybrid contribution -0.690 -0.211 1.475 1.642 sum 1.027 1.282 -8.784 8.936 Atomic orbital electron populations 1.69817 1.08808 1.31584 1.31316 1.26617 0.95311 1.03943 0.90633 0.85583 0.79422 0.76253 0.81331 1.16105 1.18556 1.18840 1.20503 0.98578 0.91624 1.40782 0.87874 1.17322 0.90203 0.90551 0.85959 1.21549 0.99698 0.97479 1.01866 1.21241 0.97988 0.92912 0.97338 1.20870 1.01232 0.97895 1.07323 1.20542 0.93499 0.95478 0.94189 1.30163 1.29517 1.00812 1.29116 0.99875 0.73868 0.70940 0.71945 1.93401 1.86973 1.35761 1.83681 1.93429 1.58235 1.72180 1.74878 1.58162 1.78910 1.18731 1.28153 1.22039 1.01771 0.79882 0.96511 1.23482 0.95047 1.00398 0.92852 0.85426 1.22816 0.97083 0.98574 0.89427 1.61993 1.05063 1.33029 1.31123 1.22625 0.88352 1.00160 0.96077 1.23292 1.01020 0.94289 0.94269 0.86808 1.21798 0.97691 0.96320 0.84436 0.89109 0.86791 0.85932 0.85576 0.86391 0.91178 0.91250 0.95091 0.89339 0.83930 0.88979 0.91693 0.92209 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.17 10.98 21.83 0.24 -35.93 16 2 C 0.06 2.48 4.85 85.26 0.41 2.89 16 3 Si 0.95 34.14 29.58 68.60 2.03 36.17 16 4 H -0.24 -7.63 7.11 99.48 0.71 -6.92 16 5 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 6 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 7 C -0.49 -24.08 6.10 23.46 0.14 -23.94 16 8 H 0.10 5.19 4.60 -2.91 -0.01 5.17 16 9 C 0.16 8.46 5.55 -21.29 -0.12 8.34 16 10 C -0.19 -9.26 8.67 22.73 0.20 -9.07 16 11 C -0.08 -3.37 10.02 22.22 0.22 -3.14 16 12 C -0.25 -10.88 10.05 22.46 0.23 -10.66 16 13 C -0.02 -0.80 9.53 22.22 0.21 -0.58 16 14 C -0.80 -39.35 5.96 22.73 0.14 -39.22 16 15 S 2.73 123.68 5.29 -56.49 -0.30 123.38 16 16 O -1.01 -46.81 16.55 -128.00 -2.12 -48.93 16 17 O -1.00 -49.63 15.00 -128.00 -1.92 -51.55 16 18 N -1.00 -37.43 3.18 -508.90 -1.62 -39.05 16 19 C 0.12 4.21 4.61 86.76 0.40 4.61 16 20 C -0.10 -2.49 4.46 -8.49 -0.04 -2.52 16 21 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 22 C 0.05 1.23 6.61 86.72 0.57 1.80 16 23 N -0.68 -14.36 7.40 -505.53 -3.74 -18.10 16 24 C 0.06 1.11 6.88 86.53 0.60 1.70 16 25 C -0.11 -2.58 4.14 -8.97 -0.04 -2.62 16 26 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 27 C 0.12 3.75 5.96 86.60 0.52 4.27 16 28 H 0.30 12.10 8.30 -92.71 -0.77 11.33 16 29 H 0.11 5.73 6.27 -2.91 -0.02 5.71 16 30 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 31 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 32 H 0.12 5.02 7.32 -2.91 -0.02 5.00 16 33 H 0.07 2.47 7.62 -2.39 -0.02 2.45 16 34 H 0.07 2.59 6.55 -2.39 -0.02 2.58 16 35 H 0.03 0.87 7.26 -2.39 -0.02 0.85 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.96 16 37 H 0.34 6.46 8.91 -89.69 -0.80 5.66 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.14 7.62 -2.38 -0.02 1.12 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 1.93 7.41 -2.39 -0.02 1.92 16 Total: -1.00 -61.33 331.36 -3.72 -65.04 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: 0.27 Total: 37.11 kcal Atomic # 6 Polarization: -71.58 SS G_CDS: 3.44 Total: -68.14 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -5.12 Total: -93.08 kcal Atomic # 8 Polarization: -96.44 SS G_CDS: -4.04 Total: -100.48 kcal Atomic # 14 Polarization: 34.14 SS G_CDS: 2.03 Total: 36.17 kcal Atomic # 16 Polarization: 123.68 SS G_CDS: -0.30 Total: 123.38 kcal Total: -61.33 -3.72 -65.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601342924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.239 kcal (2) G-P(sol) polarization free energy of solvation -61.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds