Wall clock time and date at job start Fri Apr 10 2020 18:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86793 * 120.00096 * 2 1 4 4 H 1.48496 * 109.47473 * 240.00216 * 3 2 1 5 5 H 1.48507 * 109.47102 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47202 * 120.00052 * 3 2 1 7 7 C 1.39939 * 119.99543 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00054 * 164.63344 * 7 2 1 9 9 C 1.41397 * 120.00362 * 344.90320 * 7 2 1 10 10 C 1.40736 * 120.24399 * 332.26360 * 9 7 2 11 11 C 1.37591 * 119.74771 * 180.02562 * 10 9 7 12 12 C 1.38664 * 120.24724 * 0.02601 * 11 10 9 13 13 C 1.38607 * 120.50038 * 359.97380 * 12 11 10 14 14 C 1.37637 * 120.24903 * 359.72110 * 13 12 11 15 15 S 1.76203 * 120.13029 * 180.29982 * 14 13 12 16 16 O 1.42107 * 106.40412 * 229.69579 * 15 14 13 17 17 O 1.42104 * 106.40251 * 2.61045 * 15 14 13 18 18 N 1.65600 * 107.22025 * 116.15194 * 15 14 13 19 19 C 1.47236 * 121.71210 * 96.21584 * 18 15 14 20 20 C 1.53101 * 109.39563 * 131.44191 * 19 18 15 21 21 N 1.47454 * 109.77516 * 48.44764 * 20 19 18 22 22 C 1.48071 * 109.72162 * 48.99880 * 21 20 19 23 23 C 1.54122 * 106.67335 * 269.72554 * 22 21 20 24 24 C 1.48373 * 121.71562 * 275.93309 * 18 15 14 25 25 H 1.08998 * 114.03250 * 5.21068 * 24 18 15 26 26 C 1.48800 * 108.53415 * 294.46312 * 21 20 19 27 27 H 0.97001 * 119.99522 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.12743 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.87685 * 180.02562 * 11 10 9 30 30 H 1.07997 * 119.74590 * 180.02562 * 12 11 10 31 31 H 1.07999 * 119.87826 * 180.02562 * 13 12 11 32 32 H 1.08997 * 109.48636 * 251.42385 * 19 18 15 33 33 H 1.08998 * 109.48448 * 11.45288 * 19 18 15 34 34 H 1.09000 * 109.42033 * 168.54340 * 20 19 18 35 35 H 1.09000 * 109.41849 * 288.41608 * 20 19 18 36 36 H 1.09012 * 109.98659 * 29.28687 * 22 21 20 37 37 H 1.08991 * 109.99509 * 150.59567 * 22 21 20 38 38 H 1.08999 * 110.47154 * 242.15445 * 23 22 21 39 39 H 1.08997 * 110.43784 * 119.76245 * 23 22 21 40 40 H 1.08994 * 110.98004 * 192.63205 * 26 21 20 41 41 H 1.09003 * 110.97756 * 316.38035 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0590 -1.2287 -0.2484 9 6 1.3375 -2.4155 0.3178 10 6 0.2132 -2.3981 1.1642 11 6 -0.4311 -3.5754 1.4677 12 6 0.0238 -4.7759 0.9435 13 6 1.1301 -4.8048 0.1089 14 6 1.7863 -3.6387 -0.2132 15 16 3.1876 -3.6782 -1.2808 16 8 4.2092 -2.9354 -0.6297 17 8 3.3472 -5.0316 -1.6834 18 7 2.7886 -2.8284 -2.6450 19 6 3.1546 -1.4118 -2.8091 20 6 3.7995 -1.2090 -4.1828 21 7 2.9693 -1.8451 -5.2224 22 6 1.5567 -1.4345 -5.0542 23 6 0.9032 -2.4710 -4.1193 24 6 2.0495 -3.4573 -3.7674 25 1 1.7255 -4.4788 -3.5685 26 6 2.9789 -3.3164 -5.0006 27 1 -0.4849 0.8401 0.0004 28 1 -0.1420 -1.4644 1.5746 29 1 -1.2943 -3.5644 2.1166 30 1 -0.4883 -5.6950 1.1867 31 1 1.4755 -5.7454 -0.2941 32 1 2.2599 -0.7939 -2.7327 33 1 3.8612 -1.1262 -2.0299 34 1 3.8845 -0.1422 -4.3894 35 1 4.7921 -1.6593 -4.1872 36 1 1.5079 -0.4409 -4.6086 37 1 1.0509 -1.4353 -6.0197 38 1 0.0966 -2.9934 -4.6338 39 1 0.5276 -1.9871 -3.2178 40 1 2.5683 -3.8435 -5.8618 41 1 3.9843 -3.6701 -4.7721 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601424818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:48 Heat of formation + Delta-G solvation = -32.114844 kcal Electronic energy + Delta-G solvation = -27276.412358 eV Core-core repulsion = 23669.137848 eV Total energy + Delta-G solvation = -3607.274510 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.22898 -37.63922 -36.40014 -34.93954 -34.02010 -33.22301 -31.80026 -30.28066 -29.60279 -28.87081 -25.94104 -25.59750 -23.22184 -21.70892 -21.21046 -20.51132 -20.20025 -18.15099 -17.66725 -17.28224 -16.14233 -15.73973 -15.45532 -15.07890 -14.60588 -14.45467 -14.35173 -14.05577 -13.35790 -13.23529 -13.01807 -12.80812 -12.58021 -12.34701 -11.99970 -11.75992 -11.52640 -11.34422 -11.32054 -11.28431 -11.22169 -11.16871 -10.95583 -10.82005 -10.66394 -10.65447 -10.55226 -10.31032 -9.93828 -9.49559 -9.37198 -8.93785 -8.10696 -7.89334 -7.67008 -7.14386 -4.83766 1.43147 2.29980 2.67068 2.89610 2.93080 3.05617 3.68294 3.73445 4.20567 4.30725 4.66225 4.90528 4.97746 5.16454 5.21006 5.35057 5.36516 5.42118 5.47566 5.67210 5.81144 5.85676 5.95324 5.99935 6.06056 6.10379 6.16268 6.18643 6.35122 6.37066 6.41626 6.64904 6.72871 6.88693 6.96396 6.99452 7.11778 7.15743 7.28645 7.46613 7.62443 7.76202 7.88044 8.27783 8.44041 8.60301 9.79085 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.008533 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.984762 B = 3280.412188 C = 4521.580115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.083 3.917 3 Si 0.903 3.097 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.472 4.472 8 H 0.111 0.889 9 C 0.193 3.807 10 C -0.159 4.159 11 C -0.076 4.076 12 C -0.249 4.249 13 C -0.003 4.003 14 C -0.777 4.777 15 S 2.705 3.295 16 O -0.975 6.975 17 O -0.995 6.995 18 N -0.991 5.991 19 C 0.096 3.904 20 C 0.022 3.978 21 N -0.500 5.500 22 C 0.031 3.969 23 C -0.160 4.160 24 C 0.123 3.877 25 H 0.118 0.882 26 C 0.022 3.978 27 H 0.288 0.712 28 H 0.121 0.879 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 0.658 -7.477 7.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.500 4.500 8 H 0.128 0.872 9 C 0.188 3.812 10 C -0.179 4.179 11 C -0.095 4.095 12 C -0.270 4.270 13 C -0.023 4.023 14 C -0.872 4.872 15 S 2.805 3.195 16 O -0.965 6.965 17 O -0.986 6.986 18 N -0.827 5.827 19 C -0.031 4.031 20 C -0.108 4.108 21 N -0.222 5.222 22 C -0.097 4.097 23 C -0.200 4.200 24 C 0.015 3.985 25 H 0.136 0.864 26 C -0.108 4.108 27 H 0.099 0.901 28 H 0.139 0.861 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.436 0.605 -7.907 8.059 hybrid contribution -1.045 0.742 1.288 1.817 sum 0.391 1.347 -6.619 6.766 Atomic orbital electron populations 1.69808 1.07750 1.30239 1.31867 1.25970 0.94716 1.01637 0.91534 0.86401 0.80410 0.79397 0.81156 1.17918 1.20005 1.18130 1.20396 0.98852 0.90836 1.39911 0.87174 1.16973 0.89251 0.89708 0.85234 1.21469 0.98920 0.96836 1.00672 1.20894 0.97560 0.93462 0.97601 1.20485 1.01594 0.96725 1.08159 1.20230 0.92955 0.95268 0.93833 1.29844 1.29055 1.00490 1.27811 1.00949 0.74589 0.71634 0.72372 1.93464 1.56452 1.72409 1.74219 1.93437 1.86981 1.35277 1.82912 1.58210 1.71546 1.20951 1.31982 1.22074 1.01146 0.81663 0.98205 1.22876 0.97497 1.00277 0.90150 1.66027 1.07848 1.05159 1.43124 1.23003 0.88779 0.98904 0.99005 1.23255 0.97926 0.97650 1.01168 1.22975 0.91598 0.97185 0.86739 0.86397 1.23751 1.00415 0.89889 0.96771 0.90133 0.86076 0.88871 0.88744 0.87561 0.90559 0.88436 0.89830 0.90582 0.91002 0.90627 0.91042 0.89120 0.89421 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.45 11.02 55.55 0.61 -16.84 16 2 C 0.08 1.84 5.17 -17.34 -0.09 1.75 16 3 Si 0.90 16.87 29.59 -169.99 -5.03 11.84 16 4 H -0.26 -4.53 7.11 56.52 0.40 -4.12 16 5 H -0.28 -4.98 7.11 56.52 0.40 -4.57 16 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 7 C -0.47 -11.23 6.70 -37.74 -0.25 -11.48 16 8 H 0.11 2.63 3.93 -52.48 -0.21 2.43 16 9 C 0.19 4.77 5.54 -106.82 -0.59 4.18 16 10 C -0.16 -3.86 8.67 -38.87 -0.34 -4.20 16 11 C -0.08 -1.69 10.02 -39.66 -0.40 -2.09 16 12 C -0.25 -5.42 10.05 -39.29 -0.39 -5.82 16 13 C 0.00 -0.07 9.53 -39.66 -0.38 -0.44 16 14 C -0.78 -18.34 5.96 -38.87 -0.23 -18.57 16 15 S 2.70 58.83 5.15 -107.50 -0.55 58.27 16 16 O -0.97 -23.25 14.47 -57.17 -0.83 -24.07 16 17 O -1.00 -22.40 16.15 -57.17 -0.92 -23.32 16 18 N -0.99 -18.11 2.98 -102.99 -0.31 -18.42 16 19 C 0.10 1.65 4.16 -3.59 -0.01 1.63 16 20 C 0.02 0.32 5.91 -3.47 -0.02 0.30 16 21 N -0.50 -6.95 5.97 -229.37 -1.37 -8.32 16 22 C 0.03 0.42 6.22 -2.59 -0.02 0.40 16 23 C -0.16 -2.34 5.95 -24.95 -0.15 -2.49 16 24 C 0.12 1.92 4.40 -64.61 -0.28 1.64 16 25 H 0.12 1.82 7.72 -51.93 -0.40 1.42 16 26 C 0.02 0.30 6.51 -1.68 -0.01 0.29 16 27 H 0.29 5.91 8.30 -40.82 -0.34 5.57 16 28 H 0.12 2.96 6.31 -52.48 -0.33 2.63 16 29 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.11 2.23 7.33 -52.49 -0.38 1.84 16 32 H 0.08 1.36 6.03 -51.93 -0.31 1.04 16 33 H 0.10 1.79 5.78 -51.93 -0.30 1.49 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.06 7.91 -51.93 -0.41 0.65 16 36 H 0.07 0.98 7.02 -51.92 -0.36 0.61 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.59 7.51 -51.93 -0.39 1.20 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.15 7.84 -51.93 -0.41 0.74 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -27.67 325.82 -11.84 -39.50 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -5.18 Total: 11.35 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: -3.17 Total: -34.90 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -1.06 Total: -43.58 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -1.75 Total: -47.40 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.84 kcal Atomic # 16 Polarization: 58.83 SS G_CDS: -0.55 Total: 58.27 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.67 -11.84 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601424818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.387 kcal (2) G-P(sol) polarization free energy of solvation -27.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds