Wall clock time and date at job start Fri Apr 10 2020 18:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42099 * 109.46986 * 2 1 4 4 C 1.76201 * 103.00079 * 109.05897 * 2 1 3 5 5 C 1.38353 * 119.85710 * 89.99811 * 4 2 1 6 6 C 1.37954 * 120.14897 * 180.02562 * 5 4 2 7 7 C 1.39574 * 119.84836 * 359.97438 * 6 5 4 8 8 C 1.47853 * 120.14178 * 179.97438 * 7 6 5 9 9 O 1.21553 * 119.99896 * 44.61600 * 8 7 6 10 10 N 1.34780 * 120.00119 * 224.60809 * 8 7 6 11 11 C 1.46964 * 120.58960 * 186.17152 * 10 8 7 12 12 C 1.53372 * 108.62995 * 235.20558 * 11 10 8 13 13 N 1.46965 * 108.63413 * 310.57650 * 12 11 10 14 14 C 1.36942 * 120.59155 * 235.20241 * 13 12 11 15 15 H 1.08002 * 119.99322 * 148.19683 * 14 13 12 16 16 C 1.38809 * 120.00154 * 327.91633 * 14 13 12 17 17 N 1.31622 * 120.00275 * 349.48124 * 16 14 13 18 18 Si 1.86797 * 119.99725 * 169.47307 * 16 14 13 19 19 H 1.48503 * 109.47289 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47224 * 120.00490 * 18 16 14 21 21 H 1.48504 * 109.47255 * 240.00703 * 18 16 14 22 22 C 1.46959 * 118.81035 * 55.48508 * 13 12 11 23 23 C 1.46960 * 120.59355 * 6.15155 * 10 8 7 24 24 C 1.39575 * 119.71422 * 0.25581 * 7 6 5 25 25 C 1.37960 * 119.85167 * 359.51050 * 24 7 6 26 26 H 1.08997 * 109.47349 * 310.94088 * 1 2 3 27 27 H 1.08999 * 109.47131 * 70.94706 * 1 2 3 28 28 H 1.09008 * 109.47416 * 190.94133 * 1 2 3 29 29 H 1.08007 * 119.92423 * 0.02562 * 5 4 2 30 30 H 1.07997 * 120.07687 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.60483 * 115.46818 * 11 10 8 32 32 H 1.08988 * 109.61423 * 354.95230 * 11 10 8 33 33 H 1.09001 * 109.60299 * 190.83796 * 12 11 10 34 34 H 1.08996 * 109.74881 * 70.41030 * 12 11 10 35 35 H 0.96995 * 119.99768 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.61226 * 64.26098 * 22 13 12 37 37 H 1.09004 * 109.60612 * 184.77045 * 22 13 12 38 38 H 1.08996 * 109.61210 * 244.53983 * 23 10 8 39 39 H 1.09003 * 109.60878 * 4.87885 * 23 10 8 40 40 H 1.08008 * 120.07266 * 179.72341 * 24 7 6 41 41 H 1.07997 * 119.92891 * 180.22830 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2104 -0.5606 1.6227 5 6 2.3653 -1.9139 1.8653 6 6 2.6751 -2.3595 3.1336 7 6 2.8328 -1.4416 4.1731 8 6 3.1643 -1.9121 5.5350 9 8 4.0208 -2.7600 5.6934 10 7 2.5170 -1.4007 6.6009 11 6 2.9266 -1.7573 7.9665 12 6 1.7090 -2.3161 8.7131 13 7 0.5813 -1.3915 8.5305 14 6 -0.0765 -0.8721 9.6135 15 1 -0.5068 0.1171 9.5604 16 6 -0.1951 -1.6191 10.7774 17 7 0.1362 -2.8930 10.7785 18 14 -0.8248 -0.8164 12.3422 19 1 -1.1265 0.6135 12.0783 20 1 -2.0600 -1.5079 12.7907 21 1 0.2112 -0.9168 13.4015 22 6 0.1681 -1.0394 7.1648 23 6 1.3892 -0.4763 6.4182 24 6 2.6704 -0.0781 3.9227 25 6 2.3654 0.3546 2.6488 26 1 -0.3634 0.6734 0.7763 27 1 -0.3633 0.3355 -0.9714 28 1 -0.3634 -1.0090 0.1951 29 1 2.2434 -2.6230 1.0598 30 1 2.7962 -3.4161 3.3215 31 1 3.2958 -0.8701 8.4810 32 1 3.7106 -2.5135 7.9276 33 1 1.9403 -2.4057 9.7745 34 1 1.4481 -3.2952 8.3115 35 1 0.0536 -3.4148 11.5919 36 1 -0.1988 -1.9290 6.6528 37 1 -0.6185 -0.2859 7.2035 38 1 1.6490 0.5021 6.8225 39 1 1.1599 -0.3842 5.3566 40 1 2.7867 0.6369 4.7239 41 1 2.2431 1.4095 2.4529 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610112768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:02 Heat of formation + Delta-G solvation = -6.057043 kcal Electronic energy + Delta-G solvation = -24811.046371 eV Core-core repulsion = 21204.901812 eV Total energy + Delta-G solvation = -3606.144559 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.32809 -38.42798 -36.81283 -36.02315 -34.03875 -31.87274 -31.23973 -31.19574 -30.00358 -29.09913 -27.07851 -24.54692 -23.44899 -23.05701 -22.48725 -20.68637 -19.10772 -18.34059 -17.55916 -16.71941 -16.31660 -15.96742 -15.36515 -15.13335 -14.91693 -14.72413 -14.50682 -14.04766 -13.93852 -13.68678 -13.66031 -13.35027 -13.30319 -13.18064 -12.89077 -12.55726 -12.39509 -12.06469 -11.76526 -11.37929 -11.22756 -10.92368 -10.79439 -10.62820 -10.57039 -10.28783 -10.07602 -9.92429 -9.67486 -9.28704 -9.13972 -8.70488 -8.64234 -8.34035 -6.71608 -5.89124 -3.40907 0.43030 1.15059 1.53274 2.33747 2.83063 3.24614 3.30236 3.37992 3.39776 3.50303 3.67231 4.38358 4.56950 4.60504 4.72839 4.85445 4.93596 5.08219 5.22158 5.26206 5.29593 5.46544 5.64936 5.66603 5.69912 5.74976 5.81782 5.88655 5.98660 6.06977 6.18102 6.26304 6.31811 6.44462 6.60510 6.64788 6.79482 7.20484 7.52398 7.67515 7.76748 8.34193 8.38322 9.08200 9.68437 10.26939 11.17826 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.022679 B = 0.002898 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.302322 B = 9659.227335 C =10354.358827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.332 4.668 3 O -0.858 6.858 4 C -0.451 4.451 5 C -0.049 4.049 6 C -0.088 4.088 7 C -0.078 4.078 8 C 0.546 3.454 9 O -0.545 6.545 10 N -0.586 5.586 11 C 0.085 3.915 12 C 0.160 3.840 13 N -0.591 5.591 14 C -0.259 4.259 15 H 0.067 0.933 16 C 0.006 3.994 17 N -0.902 5.902 18 Si 0.907 3.093 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.288 1.288 22 C 0.132 3.868 23 C 0.081 3.919 24 C -0.103 4.103 25 C -0.060 4.060 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.024 0.976 35 H 0.256 0.744 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.133 0.867 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.363 1.795 -22.190 22.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.529 4.471 3 O -0.853 6.853 4 C -0.547 4.547 5 C -0.069 4.069 6 C -0.108 4.108 7 C -0.081 4.081 8 C 0.333 3.667 9 O -0.424 6.424 10 N -0.317 5.317 11 C -0.038 4.038 12 C 0.033 3.967 13 N -0.314 5.314 14 C -0.389 4.389 15 H 0.084 0.916 16 C -0.193 4.193 17 N -0.546 5.546 18 Si 0.736 3.264 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.214 1.214 22 C 0.004 3.996 23 C -0.044 4.044 24 C -0.123 4.123 25 C -0.079 4.079 26 H 0.102 0.898 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.160 0.840 30 H 0.155 0.845 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.042 0.958 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.151 0.849 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.381 1.524 -22.631 22.933 hybrid contribution -1.320 1.637 2.736 3.450 sum 2.061 3.161 -19.895 20.250 Atomic orbital electron populations 1.27759 1.22130 1.08213 1.07358 1.69469 0.86159 0.99568 0.91917 1.93112 1.73229 1.37278 1.81708 1.27772 1.11054 0.99666 1.16232 1.20779 0.95738 0.93553 0.96782 1.21326 0.97587 1.00018 0.91899 1.20272 0.99034 0.94354 0.94434 1.18379 0.82105 0.81877 0.84340 1.90757 1.33816 1.31900 1.85932 1.48016 1.31831 1.45413 1.06483 1.22603 1.00374 1.00539 0.80243 1.21198 0.84043 0.90900 1.00529 1.43985 1.33630 1.53895 0.99885 1.19224 1.31254 0.97234 0.91153 0.91561 1.25228 0.99503 0.94888 0.99653 1.69964 1.51508 1.05743 1.27368 0.86157 0.78269 0.78758 0.83167 1.20176 1.21545 1.21427 1.21368 0.93102 0.97738 0.87359 1.22739 0.88268 0.92771 1.00600 1.21480 0.98529 0.94764 0.97485 1.21027 0.95325 0.99647 0.91873 0.89792 0.87638 0.86892 0.84000 0.84501 0.91912 0.89960 0.88028 0.95755 0.93395 0.95841 0.91440 0.91468 0.90421 0.84926 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.83 10.70 101.05 1.08 -1.75 16 2 S 1.33 8.62 14.18 -107.50 -1.52 7.09 16 3 O -0.86 -11.32 16.88 -35.23 -0.59 -11.91 16 4 C -0.45 -4.25 5.62 -39.49 -0.22 -4.47 16 5 C -0.05 -0.41 9.73 -39.64 -0.39 -0.80 16 6 C -0.09 -1.05 9.69 -39.19 -0.38 -1.43 16 7 C -0.08 -1.13 4.98 -104.97 -0.52 -1.65 16 8 C 0.55 9.85 7.27 -12.32 -0.09 9.76 16 9 O -0.54 -11.39 16.40 5.32 0.09 -11.30 16 10 N -0.59 -10.81 2.95 -173.33 -0.51 -11.32 16 11 C 0.09 1.72 6.60 -3.60 -0.02 1.70 16 12 C 0.16 3.79 5.45 -3.60 -0.02 3.77 16 13 N -0.59 -14.39 2.95 -171.77 -0.51 -14.90 16 14 C -0.26 -6.86 9.57 -15.06 -0.14 -7.00 16 15 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 16 C 0.01 0.17 5.05 -17.43 -0.09 0.09 16 17 N -0.90 -25.56 11.06 55.49 0.61 -24.95 16 18 Si 0.91 21.11 29.57 -169.99 -5.03 16.09 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.13 2.64 6.70 -3.37 -0.02 2.62 16 23 C 0.08 1.35 5.27 -3.37 -0.02 1.33 16 24 C -0.10 -1.34 7.43 -39.18 -0.29 -1.63 16 25 C -0.06 -0.71 9.43 -39.64 -0.37 -1.09 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.11 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 30 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.08 1.65 6.99 -51.94 -0.36 1.29 16 33 H 0.10 2.66 6.06 -51.93 -0.31 2.34 16 34 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.11 4.88 -51.93 -0.25 0.86 16 40 H 0.13 1.66 7.00 -52.48 -0.37 1.29 16 41 H 0.13 1.60 7.44 -52.49 -0.39 1.21 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -36.91 348.37 -9.16 -46.07 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.45 Total: 0.44 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.50 Total: -0.56 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.40 Total: -51.17 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.51 Total: -23.22 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.09 kcal Atomic # 16 Polarization: 8.62 SS G_CDS: -1.52 Total: 7.09 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.91 -9.16 -46.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610112768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.017 kcal (2) G-P(sol) polarization free energy of solvation -36.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds