Wall clock time and date at job start Fri Apr 10 2020 18:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42099 * 109.46986 * 2 1 4 4 C 1.76201 * 103.00079 * 109.05897 * 2 1 3 5 5 C 1.38353 * 119.85710 * 89.99811 * 4 2 1 6 6 C 1.37954 * 120.14897 * 180.02562 * 5 4 2 7 7 C 1.39574 * 119.84836 * 359.97438 * 6 5 4 8 8 C 1.47853 * 120.14178 * 179.97438 * 7 6 5 9 9 O 1.21553 * 119.99896 * 44.61600 * 8 7 6 10 10 N 1.34780 * 120.00119 * 224.60809 * 8 7 6 11 11 C 1.46964 * 120.58960 * 186.17152 * 10 8 7 12 12 C 1.53372 * 108.62995 * 235.20558 * 11 10 8 13 13 N 1.46965 * 108.63413 * 310.57650 * 12 11 10 14 14 C 1.36942 * 120.59155 * 235.20241 * 13 12 11 15 15 H 1.08002 * 119.99322 * 148.19683 * 14 13 12 16 16 C 1.38809 * 120.00154 * 327.91633 * 14 13 12 17 17 N 1.31622 * 120.00275 * 349.48124 * 16 14 13 18 18 Si 1.86797 * 119.99725 * 169.47307 * 16 14 13 19 19 H 1.48503 * 109.47289 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47224 * 120.00490 * 18 16 14 21 21 H 1.48504 * 109.47255 * 240.00703 * 18 16 14 22 22 C 1.46959 * 118.81035 * 55.48508 * 13 12 11 23 23 C 1.46960 * 120.59355 * 6.15155 * 10 8 7 24 24 C 1.39575 * 119.71422 * 0.25581 * 7 6 5 25 25 C 1.37960 * 119.85167 * 359.51050 * 24 7 6 26 26 H 1.08997 * 109.47349 * 310.94088 * 1 2 3 27 27 H 1.08999 * 109.47131 * 70.94706 * 1 2 3 28 28 H 1.09008 * 109.47416 * 190.94133 * 1 2 3 29 29 H 1.08007 * 119.92423 * 0.02562 * 5 4 2 30 30 H 1.07997 * 120.07687 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.60483 * 115.46818 * 11 10 8 32 32 H 1.08988 * 109.61423 * 354.95230 * 11 10 8 33 33 H 1.09001 * 109.60299 * 190.83796 * 12 11 10 34 34 H 1.08996 * 109.74881 * 70.41030 * 12 11 10 35 35 H 0.96995 * 119.99768 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.61226 * 64.26098 * 22 13 12 37 37 H 1.09004 * 109.60612 * 184.77045 * 22 13 12 38 38 H 1.08996 * 109.61210 * 244.53983 * 23 10 8 39 39 H 1.09003 * 109.60878 * 4.87885 * 23 10 8 40 40 H 1.08008 * 120.07266 * 179.72341 * 24 7 6 41 41 H 1.07997 * 119.92891 * 180.22830 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2104 -0.5606 1.6227 5 6 2.3653 -1.9139 1.8653 6 6 2.6751 -2.3595 3.1336 7 6 2.8328 -1.4416 4.1731 8 6 3.1643 -1.9121 5.5350 9 8 4.0208 -2.7600 5.6934 10 7 2.5170 -1.4007 6.6009 11 6 2.9266 -1.7573 7.9665 12 6 1.7090 -2.3161 8.7131 13 7 0.5813 -1.3915 8.5305 14 6 -0.0765 -0.8721 9.6135 15 1 -0.5068 0.1171 9.5604 16 6 -0.1951 -1.6191 10.7774 17 7 0.1362 -2.8930 10.7785 18 14 -0.8248 -0.8164 12.3422 19 1 -1.1265 0.6135 12.0783 20 1 -2.0600 -1.5079 12.7907 21 1 0.2112 -0.9168 13.4015 22 6 0.1681 -1.0394 7.1648 23 6 1.3892 -0.4763 6.4182 24 6 2.6704 -0.0781 3.9227 25 6 2.3654 0.3546 2.6488 26 1 -0.3634 0.6734 0.7763 27 1 -0.3633 0.3355 -0.9714 28 1 -0.3634 -1.0090 0.1951 29 1 2.2434 -2.6230 1.0598 30 1 2.7962 -3.4161 3.3215 31 1 3.2958 -0.8701 8.4810 32 1 3.7106 -2.5135 7.9276 33 1 1.9403 -2.4057 9.7745 34 1 1.4481 -3.2952 8.3115 35 1 0.0536 -3.4148 11.5919 36 1 -0.1988 -1.9290 6.6528 37 1 -0.6185 -0.2859 7.2035 38 1 1.6490 0.5021 6.8225 39 1 1.1599 -0.3842 5.3566 40 1 2.7867 0.6369 4.7239 41 1 2.2431 1.4095 2.4529 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610112768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:01 Heat of formation + Delta-G solvation = -32.156648 kcal Electronic energy + Delta-G solvation = -24812.178135 eV Core-core repulsion = 21204.901812 eV Total energy + Delta-G solvation = -3607.276323 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.61073 -39.55964 -38.45414 -36.86930 -35.78130 -33.28526 -32.88061 -32.11523 -31.48382 -29.57737 -28.81218 -26.07345 -24.95243 -24.33890 -23.65670 -22.22803 -20.57523 -19.14876 -19.00976 -18.07629 -17.51810 -17.17442 -16.81054 -16.64520 -15.91238 -15.73199 -15.67388 -15.54031 -15.23484 -15.18913 -15.00814 -14.65302 -14.34409 -14.17845 -13.92200 -13.72023 -13.39945 -13.30526 -13.09245 -12.78730 -12.72511 -12.54203 -12.33933 -12.23999 -12.08591 -11.98143 -11.73205 -11.42980 -11.05026 -10.67399 -10.28368 -10.02840 -9.94276 -9.35988 -8.67755 -7.92343 -5.48186 -0.46614 0.28484 0.90904 1.44546 1.47030 1.48603 1.57278 1.79222 1.90487 2.46234 2.58150 2.99021 3.23990 3.31699 3.52249 3.76063 3.87906 4.12947 4.14626 4.27902 4.31270 4.36968 4.40198 4.43433 4.54795 4.58510 4.60459 4.69871 4.74633 4.93136 4.96242 5.04240 5.13456 5.14805 5.25543 5.27062 5.38176 5.56037 5.61172 5.78258 6.32042 6.33018 6.94438 7.05684 7.71806 8.27262 9.12610 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.022679 B = 0.002898 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.302322 B = 9659.227335 C =10354.358827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.409 4.591 3 O -0.923 6.923 4 C -0.450 4.450 5 C -0.028 4.028 6 C -0.097 4.097 7 C -0.105 4.105 8 C 0.546 3.454 9 O -0.581 6.581 10 N -0.593 5.593 11 C 0.100 3.900 12 C 0.172 3.828 13 N -0.608 5.608 14 C -0.266 4.266 15 H 0.073 0.927 16 C -0.047 4.047 17 N -0.937 5.937 18 Si 0.973 3.027 19 H -0.264 1.264 20 H -0.292 1.292 21 H -0.290 1.290 22 C 0.128 3.872 23 C 0.094 3.906 24 C -0.109 4.109 25 C -0.075 4.075 26 H 0.062 0.938 27 H 0.122 0.878 28 H 0.142 0.858 29 H 0.202 0.798 30 H 0.140 0.860 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.073 0.927 34 H -0.006 1.006 35 H 0.252 0.748 36 H 0.015 0.985 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.131 0.869 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 2.432 -25.120 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 1.606 4.394 3 O -0.919 6.919 4 C -0.545 4.545 5 C -0.046 4.046 6 C -0.117 4.117 7 C -0.108 4.108 8 C 0.336 3.664 9 O -0.462 6.462 10 N -0.323 5.323 11 C -0.024 4.024 12 C 0.046 3.954 13 N -0.332 5.332 14 C -0.396 4.396 15 H 0.091 0.909 16 C -0.243 4.243 17 N -0.582 5.582 18 Si 0.801 3.199 19 H -0.188 1.188 20 H -0.219 1.219 21 H -0.217 1.217 22 C 0.002 3.998 23 C -0.029 4.029 24 C -0.129 4.129 25 C -0.094 4.094 26 H 0.081 0.919 27 H 0.141 0.859 28 H 0.160 0.840 29 H 0.219 0.781 30 H 0.158 0.842 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.012 0.988 35 H 0.061 0.939 36 H 0.033 0.967 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.125 0.875 40 H 0.149 0.851 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.448 2.193 -25.582 25.792 hybrid contribution -1.106 1.409 3.461 3.897 sum 1.342 3.602 -22.121 22.453 Atomic orbital electron populations 1.27773 1.20485 1.09685 1.07719 1.68744 0.85832 0.96407 0.88451 1.92993 1.75803 1.40835 1.82262 1.28297 1.09323 0.99950 1.16905 1.21375 0.92485 0.94003 0.96731 1.21598 0.97511 0.99877 0.92700 1.20071 1.02417 0.95476 0.92842 1.18981 0.81101 0.80838 0.85515 1.90723 1.35273 1.33564 1.86673 1.48062 1.32517 1.45872 1.05889 1.22224 0.98371 1.00480 0.81341 1.20874 0.85545 0.89927 0.99082 1.44221 1.33930 1.53783 1.01270 1.19578 1.30566 0.97513 0.91970 0.90904 1.26001 1.00267 0.95338 1.02672 1.70132 1.53118 1.07148 1.27797 0.85124 0.77152 0.78371 0.79259 1.18772 1.21902 1.21717 1.21534 0.95032 0.97794 0.85426 1.22673 0.86088 0.92278 1.01866 1.21412 0.99227 0.94091 0.98161 1.21097 0.96191 0.99959 0.92186 0.91853 0.85907 0.83962 0.78066 0.84237 0.91217 0.90337 0.90856 0.98837 0.93887 0.96741 0.90190 0.90504 0.87537 0.85134 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.60 10.70 113.37 1.21 -2.39 16 2 S 1.41 13.26 14.18 -56.49 -0.80 12.46 16 3 O -0.92 -22.66 16.88 -148.98 -2.52 -25.17 16 4 C -0.45 -6.98 5.62 22.33 0.13 -6.85 16 5 C -0.03 -0.34 9.73 22.23 0.22 -0.12 16 6 C -0.10 -2.07 9.69 22.52 0.22 -1.86 16 7 C -0.10 -2.94 4.98 -20.09 -0.10 -3.04 16 8 C 0.55 19.82 7.27 86.79 0.63 20.46 16 9 O -0.58 -24.79 16.40 -3.88 -0.06 -24.86 16 10 N -0.59 -22.02 2.95 -820.57 -2.42 -24.44 16 11 C 0.10 4.15 6.60 86.42 0.57 4.72 16 12 C 0.17 8.56 5.45 86.42 0.47 9.03 16 13 N -0.61 -30.16 2.95 -697.35 -2.06 -32.21 16 14 C -0.27 -14.21 9.57 84.03 0.80 -13.40 16 15 H 0.07 3.72 7.85 -2.91 -0.02 3.70 16 16 C -0.05 -2.58 5.05 84.86 0.43 -2.15 16 17 N -0.94 -54.85 11.06 21.65 0.24 -54.61 16 18 Si 0.97 43.91 29.57 68.60 2.03 45.94 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 22 C 0.13 5.12 6.70 86.56 0.58 5.70 16 23 C 0.09 3.08 5.27 86.56 0.46 3.54 16 24 C -0.11 -2.73 7.43 22.53 0.17 -2.57 16 25 C -0.08 -1.68 9.43 22.23 0.21 -1.47 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.20 0.03 8.06 -2.91 -0.02 0.01 16 30 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.08 3.30 6.99 -2.39 -0.02 3.28 16 33 H 0.07 4.04 6.06 -2.39 -0.01 4.03 16 34 H -0.01 -0.36 8.14 -2.39 -0.02 -0.37 16 35 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 2.95 7.93 -2.38 -0.02 2.94 16 38 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.11 2.90 4.88 -2.39 -0.01 2.89 16 40 H 0.13 3.19 7.00 -2.91 -0.02 3.17 16 41 H 0.12 2.92 7.44 -2.91 -0.02 2.90 16 Total: -1.00 -83.99 348.37 1.44 -82.55 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.04 Total: 10.76 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 5.99 Total: 9.59 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -4.24 Total: -111.26 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -2.58 Total: -50.03 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 13.26 SS G_CDS: -0.80 Total: 12.46 kcal Total: -83.99 1.44 -82.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610112768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.391 kcal (2) G-P(sol) polarization free energy of solvation -83.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds