Wall clock time and date at job start Fri Apr 10 2020 18:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29412 * 125.69547 * 2 1 4 4 N 1.26395 * 116.47319 * 180.26378 * 3 2 1 5 5 C 1.29412 * 116.47584 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.69567 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.47477 * 90.03584 * 6 5 4 8 8 C 1.34766 * 120.00138 * 179.97438 * 7 6 5 9 9 O 1.21838 * 120.00292 * 0.02562 * 8 7 6 10 10 N 1.33832 * 120.00026 * 180.02562 * 8 7 6 11 11 C 1.32937 * 120.00255 * 180.02562 * 10 8 7 12 12 C 1.41208 * 126.37611 * 0.02562 * 11 10 8 13 13 C 1.34960 * 108.24622 * 180.02562 * 12 11 10 14 14 N 1.36454 * 108.94160 * 0.02562 * 13 12 11 15 15 C 1.46501 * 125.84963 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47245 * 84.97500 * 15 14 13 17 17 H 1.08000 * 120.00166 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00161 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99998 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99880 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47309 * 60.00222 * 20 18 16 22 22 H 1.48498 * 109.47062 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47316 * 299.99984 * 20 18 16 24 24 N 1.37422 * 126.38090 * 179.71665 * 11 10 8 25 25 H 0.96998 * 126.36306 * 359.97438 * 24 11 10 26 26 S 1.71211 * 108.60984 * 359.97438 * 5 4 3 27 27 H 1.09005 * 109.46931 * 269.69686 * 1 2 3 28 28 H 1.08996 * 109.47023 * 29.69154 * 1 2 3 29 29 H 1.08998 * 109.47204 * 149.69796 * 1 2 3 30 30 H 1.08997 * 109.47491 * 210.04269 * 6 5 4 31 31 H 1.09001 * 109.46944 * 330.03658 * 6 5 4 32 32 H 0.96999 * 119.99377 * 0.02562 * 7 6 5 33 33 H 1.08005 * 125.87730 * 359.96646 * 12 11 10 34 34 H 1.07995 * 125.52890 * 179.97438 * 13 12 11 35 35 H 1.09001 * 109.47631 * 204.97520 * 15 14 13 36 36 H 1.09001 * 109.47188 * 324.97571 * 15 14 13 37 37 H 0.97002 * 120.00146 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8484 -0.0052 5 6 3.8936 -0.3875 -0.0094 6 6 5.3232 -0.8642 -0.0165 7 7 5.7921 -1.0224 1.3624 8 6 7.0499 -1.4427 1.6024 9 8 7.7972 -1.6907 0.6726 10 7 7.4780 -1.5878 2.8620 11 6 8.7189 -2.0019 3.0988 12 6 9.6935 -2.3245 2.1293 13 6 10.8192 -2.7018 2.7709 14 7 10.6055 -2.6346 4.1170 15 6 11.5823 -2.9629 5.1583 16 6 12.4483 -1.7603 5.4318 17 1 12.2875 -0.8433 4.8844 18 6 13.4467 -1.8310 6.3801 19 7 13.6436 -2.9481 7.0456 20 14 14.5206 -0.3405 6.7185 21 1 13.6709 0.7883 7.1757 22 1 15.5107 -0.6732 7.7741 23 1 15.2336 0.0485 5.4754 24 7 9.2939 -2.1901 4.3327 25 1 8.8698 -2.0451 5.1929 26 16 2.5060 -1.3905 -0.0057 27 1 -0.3633 -0.0054 1.0277 28 1 -0.3633 0.8927 -0.5090 29 1 -0.3633 -0.8872 -0.5185 30 1 5.3843 -1.8219 -0.5333 31 1 5.9473 -0.1334 -0.5309 32 1 5.1970 -0.8254 2.1026 33 1 9.5605 -2.2783 1.0584 34 1 11.7396 -3.0080 2.2962 35 1 11.0588 -3.2486 6.0706 36 1 12.2063 -3.7913 4.8229 37 1 14.3462 -2.9980 7.7125 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611557291.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:05 Heat of formation + Delta-G solvation = 116.648056 kcal Electronic energy + Delta-G solvation = -22799.426192 eV Core-core repulsion = 19127.354933 eV Total energy + Delta-G solvation = -3672.071259 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.095 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.44929 -42.24635 -40.33772 -36.59846 -35.74716 -34.57749 -33.92543 -32.48670 -32.31391 -30.80844 -28.50509 -27.54155 -25.54833 -24.78043 -23.12013 -22.64612 -21.34882 -20.93927 -20.41601 -19.05356 -18.67367 -17.72892 -17.45408 -16.75414 -16.55704 -16.47991 -16.23346 -15.80360 -15.63893 -15.25082 -14.69407 -14.58848 -14.35049 -14.23909 -14.17950 -13.87754 -13.72364 -13.63837 -13.29975 -13.07884 -12.72405 -12.30097 -12.09224 -11.56064 -11.35523 -11.29113 -11.20828 -10.86903 -10.75654 -10.68311 -10.48757 -10.06838 -9.92963 -8.54349 -8.20432 -6.54293 -0.72708 -0.17751 0.26541 0.32064 0.62067 1.35313 1.40191 1.43043 1.49781 1.69029 2.28759 2.34656 2.82604 2.94970 3.05484 3.11980 3.47740 3.78471 3.95154 4.12471 4.30968 4.44555 4.45495 4.54137 4.62979 4.73624 4.74719 4.88702 5.00044 5.08163 5.24945 5.51757 5.59162 5.72660 5.92262 6.14503 6.34702 6.59580 6.84686 6.93094 7.19394 7.43493 8.06977 8.67395 Molecular weight = 322.10amu Principal moments of inertia in cm(-1) A = 0.032515 B = 0.001938 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.945915 B =14445.671151 C =14666.630761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.017 4.017 3 N -0.304 5.304 4 N -0.274 5.274 5 C -0.056 4.056 6 C 0.228 3.772 7 N -0.717 5.717 8 C 0.680 3.320 9 O -0.653 6.653 10 N -0.723 5.723 11 C 0.472 3.528 12 C -0.345 4.345 13 C 0.178 3.822 14 N -0.349 5.349 15 C 0.268 3.732 16 C -0.567 4.567 17 H 0.059 0.941 18 C 0.031 3.969 19 N -0.912 5.912 20 Si 0.962 3.038 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.268 1.268 24 N -0.466 5.466 25 H 0.451 0.549 26 S 0.261 5.739 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.403 0.597 33 H 0.175 0.825 34 H 0.224 0.776 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.830 -2.035 -10.990 23.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.295 4.295 3 N -0.143 5.143 4 N -0.113 5.113 5 C -0.335 4.335 6 C 0.100 3.900 7 N -0.373 5.373 8 C 0.379 3.621 9 O -0.537 6.537 10 N -0.488 5.488 11 C 0.219 3.781 12 C -0.377 4.377 13 C 0.033 3.967 14 N -0.135 5.135 15 C 0.151 3.849 16 C -0.605 4.605 17 H 0.077 0.923 18 C -0.172 4.172 19 N -0.550 5.550 20 Si 0.787 3.213 21 H -0.203 1.203 22 H -0.205 1.205 23 H -0.193 1.193 24 N -0.189 5.189 25 H 0.300 0.700 26 S 0.505 5.495 27 H 0.127 0.873 28 H 0.116 0.884 29 H 0.132 0.868 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.238 0.762 33 H 0.192 0.808 34 H 0.240 0.760 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.575 -1.823 -10.595 23.214 hybrid contribution 0.796 1.121 0.682 1.535 sum -19.779 -0.701 -9.912 22.135 Atomic orbital electron populations 1.20698 0.80789 1.06345 1.05968 1.30089 1.06295 0.91962 1.01168 1.71490 0.96823 1.28559 1.17417 1.71450 1.07502 1.18572 1.13800 1.29043 1.03805 0.93360 1.07280 1.19324 0.84574 1.01944 0.84202 1.44509 1.12889 1.72514 1.07375 1.16728 0.82267 0.77807 0.85323 1.90723 1.55440 1.58688 1.48832 1.68050 1.14231 1.43856 1.22699 1.18889 0.89942 0.85511 0.83753 1.22318 0.93719 1.19811 1.01879 1.23355 1.00533 0.92071 0.80698 1.47867 1.00953 1.56907 1.07772 1.19732 0.83794 0.96864 0.84529 1.21598 1.17233 0.98769 1.22883 0.92286 1.25573 0.97960 0.98833 0.94799 1.69949 1.33067 1.27181 1.24774 0.85538 0.78380 0.79162 0.78244 1.20256 1.20473 1.19333 1.44428 1.03226 1.63119 1.08147 0.70000 1.83500 0.94441 1.08991 1.62618 0.87313 0.88361 0.86788 0.88041 0.90003 0.76206 0.80756 0.75998 0.93831 0.90929 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.48 71.24 0.75 0.24 16 2 C -0.02 -0.28 7.53 88.47 0.67 0.39 16 3 N -0.30 -7.61 11.66 -50.85 -0.59 -8.20 16 4 N -0.27 -7.67 11.66 -50.85 -0.59 -8.27 16 5 C -0.06 -1.28 6.90 88.47 0.61 -0.67 16 6 C 0.23 5.82 6.27 85.63 0.54 6.36 16 7 N -0.72 -21.92 5.55 -482.83 -2.68 -24.60 16 8 C 0.68 26.24 8.47 179.35 1.52 27.76 16 9 O -0.65 -27.67 13.26 -4.79 -0.06 -27.74 16 10 N -0.72 -28.35 10.59 -322.56 -3.42 -31.77 16 11 C 0.47 18.06 8.07 133.95 1.08 19.15 16 12 C -0.34 -12.52 9.52 22.25 0.21 -12.31 16 13 C 0.18 5.66 11.45 83.22 0.95 6.61 16 14 N -0.35 -12.43 3.63 -350.84 -1.28 -13.71 16 15 C 0.27 10.80 6.19 85.63 0.53 11.33 16 16 C -0.57 -26.34 9.39 25.60 0.24 -26.10 16 17 H 0.06 2.83 7.81 -2.91 -0.02 2.81 16 18 C 0.03 1.47 5.46 84.66 0.46 1.93 16 19 N -0.91 -45.50 13.29 21.45 0.28 -45.21 16 20 Si 0.96 38.87 29.54 68.60 2.03 40.90 16 21 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 24 N -0.47 -16.26 7.38 -54.78 -0.40 -16.66 16 25 H 0.45 13.98 8.96 -213.29 -1.91 12.07 16 26 S 0.26 3.78 23.04 -56.49 -1.30 2.48 16 27 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.40 11.43 8.56 -92.71 -0.79 10.64 16 33 H 0.18 6.74 5.77 -2.91 -0.02 6.72 16 34 H 0.22 5.23 8.06 -2.91 -0.02 5.21 16 35 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 Total: -1.00 -66.82 345.13 -2.01 -68.83 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -1.55 Total: 29.25 kcal Atomic # 6 Polarization: 27.14 SS G_CDS: 7.56 Total: 34.70 kcal Atomic # 7 Polarization: -139.74 SS G_CDS: -8.68 Total: -148.42 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.06 Total: -27.74 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.30 Total: 2.48 kcal Total: -66.82 -2.01 -68.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611557291.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.478 kcal (2) G-P(sol) polarization free energy of solvation -66.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds