Wall clock time and date at job start Fri Apr 10 2020 18:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47020 * 2 1 4 4 N 1.46500 * 109.47326 * 120.00147 * 2 1 3 5 5 S 1.65600 * 120.00000 * 263.34901 * 4 2 1 6 6 O 1.42099 * 106.39949 * 310.92575 * 5 4 2 7 7 O 1.42103 * 106.39881 * 178.00402 * 5 4 2 8 8 C 1.76197 * 107.21736 * 64.46633 * 5 4 2 9 9 C 1.37643 * 120.12747 * 244.91213 * 8 5 4 10 10 C 1.38615 * 120.25073 * 179.97438 * 9 8 5 11 11 C 1.38658 * 120.50005 * 0.02562 * 10 9 8 12 12 C 1.37600 * 120.24749 * 0.02562 * 11 10 9 13 13 C 1.40693 * 120.12960 * 64.91050 * 8 5 4 14 14 C 1.41396 * 120.24685 * 0.04121 * 13 8 5 15 15 H 1.07998 * 119.99678 * 331.15234 * 14 13 8 16 16 C 1.39943 * 120.00394 * 151.14777 * 14 13 8 17 17 N 1.30816 * 120.00529 * 161.59404 * 16 14 13 18 18 Si 1.86809 * 119.99768 * 341.59380 * 16 14 13 19 19 H 1.48499 * 109.47174 * 95.14103 * 18 16 14 20 20 H 1.48494 * 109.46871 * 215.14388 * 18 16 14 21 21 H 1.48505 * 109.46951 * 335.14138 * 18 16 14 22 22 C 1.50702 * 109.47108 * 240.00293 * 2 1 3 23 23 N 1.33237 * 125.52779 * 284.69126 * 22 2 1 24 24 C 1.30835 * 109.82966 * 179.85386 * 23 22 2 25 25 N 1.34422 * 108.07540 * 0.40649 * 24 23 22 26 26 H 0.97002 * 126.82092 * 179.71973 * 25 24 23 27 27 N 1.30708 * 125.52626 * 104.99704 * 22 2 1 28 28 H 1.08996 * 109.47088 * 299.99670 * 1 2 3 29 29 H 1.08996 * 109.47115 * 60.00005 * 1 2 3 30 30 H 1.09004 * 109.46653 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00044 * 83.34768 * 4 2 1 32 32 H 1.08003 * 119.87264 * 0.25228 * 9 8 5 33 33 H 1.07999 * 119.74920 * 179.97438 * 10 9 8 34 34 H 1.07993 * 119.87829 * 180.02562 * 11 10 9 35 35 H 1.08000 * 120.12430 * 180.02562 * 12 11 10 36 36 H 0.97003 * 120.00611 * 180.02562 * 17 16 14 37 37 H 1.08003 * 125.95835 * 180.19155 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 16 2.4511 0.1803 2.5365 6 8 3.3113 1.2158 2.0816 7 8 2.8303 -0.7671 3.5254 8 6 0.9953 0.9707 3.1371 9 6 0.8993 2.3437 3.1243 10 6 -0.2449 2.9682 3.5957 11 6 -1.3043 2.2195 4.0854 12 6 -1.2298 0.8457 4.1087 13 6 -0.0734 0.2009 3.6317 14 6 0.0142 -1.2103 3.6506 15 1 0.6182 -1.7236 2.9171 16 6 -0.6816 -1.9417 4.6198 17 7 -0.9039 -3.2184 4.4412 18 14 -1.2930 -1.0948 6.1685 19 1 -2.7066 -0.6801 5.9808 20 1 -1.2006 -2.0336 7.3153 21 1 -0.4578 0.1027 6.4405 22 6 2.0324 -0.7104 -1.2305 23 7 2.0312 -2.0295 -1.4177 24 6 2.5328 -2.3115 -2.5927 25 7 2.8789 -1.1563 -3.1866 26 1 3.2799 -1.0508 -4.0635 27 7 2.5451 -0.1326 -2.2849 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 2.0884 -1.6581 1.2030 32 1 1.7168 2.9366 2.7413 33 1 -0.3115 4.0460 3.5822 34 1 -2.1912 2.7164 4.4498 35 1 -2.0563 0.2644 4.4902 36 1 -1.3866 -3.7253 5.1128 37 1 2.6516 -3.3002 -3.0109 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619573044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:17 Heat of formation + Delta-G solvation = 32.363777 kcal Electronic energy + Delta-G solvation = -25528.460856 eV Core-core repulsion = 21820.442005 eV Total energy + Delta-G solvation = -3708.018851 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.12121 -37.85885 -36.40096 -35.93679 -34.85087 -33.83746 -32.22967 -31.27358 -30.68064 -30.08740 -29.02305 -25.38121 -23.86699 -22.78148 -21.98946 -21.16507 -20.11610 -18.68621 -18.41313 -17.71437 -17.06308 -16.45964 -15.71939 -15.35176 -15.29534 -14.99473 -14.40849 -14.16372 -13.73233 -13.49219 -13.36737 -13.04608 -12.76413 -12.31809 -12.15380 -12.03277 -11.69424 -11.31078 -11.18102 -11.14819 -11.09118 -11.01794 -10.86633 -10.67838 -10.37351 -10.12632 -10.05809 -9.94224 -9.78736 -9.56989 -9.30929 -8.88589 -8.21375 -7.81063 -7.20060 -4.82186 1.40930 1.62549 2.11036 2.56525 2.60884 2.89711 2.99669 3.11791 3.22885 3.82062 3.89959 4.06295 4.29714 4.64837 4.71962 4.95406 5.11858 5.40200 5.51272 5.57674 5.79459 5.88570 5.96914 6.13985 6.23991 6.25113 6.28212 6.42762 6.53618 6.68941 6.73925 6.95917 6.97109 7.12985 7.28717 7.42507 7.58131 7.65373 7.83686 8.07495 8.09568 8.30721 8.52489 9.78782 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.005232 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.682029 B = 5350.334779 C = 5966.441801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.253 3.747 3 H 0.108 0.892 4 N -1.108 6.108 5 S 2.700 3.300 6 O -0.996 6.996 7 O -0.958 6.958 8 C -0.771 4.771 9 C 0.019 3.981 10 C -0.262 4.262 11 C -0.042 4.042 12 C -0.236 4.236 13 C 0.160 3.840 14 C -0.423 4.423 15 H 0.105 0.895 16 C 0.090 3.910 17 N -0.774 5.774 18 Si 0.913 3.087 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.240 1.240 22 C 0.236 3.764 23 N -0.527 5.527 24 C 0.257 3.743 25 N -0.489 5.489 26 H 0.440 0.560 27 N -0.309 5.309 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.422 0.578 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.292 0.708 37 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.499 1.114 -11.247 11.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.142 3.858 3 H 0.126 0.874 4 N -0.865 5.865 5 S 2.797 3.203 6 O -0.986 6.986 7 O -0.948 6.948 8 C -0.866 4.866 9 C -0.001 4.001 10 C -0.283 4.283 11 C -0.061 4.061 12 C -0.255 4.255 13 C 0.155 3.845 14 C -0.450 4.450 15 H 0.123 0.877 16 C -0.134 4.134 17 N -0.394 5.394 18 Si 0.738 3.262 19 H -0.194 1.194 20 H -0.212 1.212 21 H -0.162 1.162 22 C -0.048 4.048 23 N -0.255 5.255 24 C -0.042 4.042 25 N -0.207 5.207 26 H 0.285 0.715 27 N -0.138 5.138 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.257 0.743 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.261 1.554 -10.656 11.003 hybrid contribution -0.847 -0.349 -0.170 0.932 sum 1.414 1.205 -10.826 10.984 Atomic orbital electron populations 1.22299 0.92807 1.04144 1.03196 1.18755 0.94625 0.94315 0.78133 0.87387 1.55689 1.83741 1.19970 1.27088 1.01154 0.74171 0.72847 0.72125 1.93463 1.64645 1.58623 1.81872 1.93568 1.82538 1.61856 1.56823 1.29853 1.20727 1.03363 1.32650 1.20396 0.95879 0.92490 0.91331 1.20459 0.96446 0.97801 1.13553 1.20812 0.96606 0.93996 0.94682 1.21167 0.98937 0.94302 1.11143 1.16994 0.88710 0.92326 0.86497 1.19858 1.22821 0.89760 1.12548 0.87687 1.26197 0.91981 0.94804 1.00393 1.69657 1.26909 1.08696 1.34173 0.86307 0.79921 0.80600 0.79358 1.19351 1.21212 1.16237 1.24464 0.96079 0.88781 0.95513 1.70381 1.23343 1.15129 1.16665 1.26149 0.94547 0.93604 0.89884 1.48148 1.49484 1.04922 1.18157 0.71517 1.78034 1.22111 1.11479 1.02223 0.89500 0.92247 0.90841 0.74308 0.86883 0.88236 0.88415 0.87661 0.89719 0.76153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.50 37.16 0.35 -2.33 16 2 C 0.25 4.32 3.45 -69.08 -0.24 4.08 16 3 H 0.11 1.82 7.51 -51.93 -0.39 1.43 16 4 N -1.11 -21.04 4.57 -5.88 -0.03 -21.06 16 5 S 2.70 59.20 4.93 -107.50 -0.53 58.67 16 6 O -1.00 -22.48 16.33 -57.17 -0.93 -23.42 16 7 O -0.96 -24.02 16.58 -57.17 -0.95 -24.97 16 8 C -0.77 -17.40 4.99 -38.87 -0.19 -17.59 16 9 C 0.02 0.39 9.54 -39.66 -0.38 0.02 16 10 C -0.26 -5.20 10.05 -39.29 -0.39 -5.59 16 11 C -0.04 -0.86 10.02 -39.66 -0.40 -1.25 16 12 C -0.24 -5.31 7.17 -38.87 -0.28 -5.59 16 13 C 0.16 3.82 4.72 -106.82 -0.50 3.31 16 14 C -0.42 -10.66 8.15 -37.74 -0.31 -10.97 16 15 H 0.11 2.67 5.95 -52.49 -0.31 2.35 16 16 C 0.09 2.24 5.41 -17.35 -0.09 2.15 16 17 N -0.77 -19.22 13.93 55.55 0.77 -18.44 16 18 Si 0.91 19.96 24.50 -169.99 -4.16 15.80 16 19 H -0.27 -5.50 6.68 56.52 0.38 -5.13 16 20 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.24 -5.48 6.85 56.52 0.39 -5.10 16 22 C 0.24 3.79 6.97 -156.86 -1.09 2.70 16 23 N -0.53 -7.81 10.93 -11.98 -0.13 -7.94 16 24 C 0.26 2.55 13.13 -90.66 -1.19 1.36 16 25 N -0.49 -4.80 7.45 29.53 0.22 -4.58 16 26 H 0.44 2.40 8.96 -182.33 -1.63 0.77 16 27 N -0.31 -4.55 12.80 32.42 0.41 -4.14 16 28 H 0.09 1.54 6.74 -51.93 -0.35 1.19 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.42 7.87 8.38 -34.47 -0.29 7.59 16 32 H 0.11 2.17 7.33 -52.48 -0.38 1.79 16 33 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.11 2.32 4.61 -52.49 -0.24 2.08 16 36 H 0.29 6.52 8.30 -40.82 -0.34 6.18 16 37 H 0.22 0.98 8.06 -52.48 -0.42 0.55 16 LS Contribution 323.99 15.07 4.88 4.88 Total: -1.00 -33.02 323.99 -10.05 -43.07 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -4.89 Total: 11.85 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -4.72 Total: -29.72 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 1.25 Total: -56.17 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -1.88 Total: -48.39 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.16 Total: 15.80 kcal Atomic # 16 Polarization: 59.20 SS G_CDS: -0.53 Total: 58.67 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.02 -10.05 -43.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.431 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds