Wall clock time and date at job start Fri Apr 10 2020 18:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47543 * 2 1 4 4 N 1.46508 * 109.46635 * 240.00183 * 2 1 3 5 5 S 1.65604 * 119.99482 * 96.26544 * 4 2 1 6 6 O 1.42109 * 106.39881 * 178.55352 * 5 4 2 7 7 O 1.42100 * 106.40387 * 311.47167 * 5 4 2 8 8 C 1.76196 * 107.22088 * 65.01709 * 5 4 2 9 9 C 1.37641 * 120.12578 * 244.89698 * 8 5 4 10 10 C 1.38611 * 120.24836 * 180.02562 * 9 8 5 11 11 C 1.38658 * 120.50218 * 359.97438 * 10 9 8 12 12 C 1.37600 * 120.24904 * 0.02562 * 11 10 9 13 13 C 1.40703 * 120.13027 * 64.61933 * 8 5 4 14 14 C 1.41390 * 120.24190 * 359.97438 * 13 8 5 15 15 H 1.08001 * 120.00619 * 330.66490 * 14 13 8 16 16 C 1.39949 * 119.99734 * 150.65807 * 14 13 8 17 17 N 1.30827 * 119.99681 * 161.80749 * 16 14 13 18 18 Si 1.86799 * 120.00007 * 341.80606 * 16 14 13 19 19 H 1.48502 * 109.46886 * 95.28274 * 18 16 14 20 20 H 1.48499 * 109.47179 * 215.28159 * 18 16 14 21 21 H 1.48494 * 109.47030 * 335.28006 * 18 16 14 22 22 C 1.50694 * 109.47249 * 120.00504 * 2 1 3 23 23 N 1.33238 * 125.53002 * 254.99723 * 22 2 1 24 24 C 1.30825 * 109.83408 * 180.02562 * 23 22 2 25 25 N 1.34434 * 108.07841 * 359.97438 * 24 23 22 26 26 H 0.96998 * 126.82286 * 180.02562 * 25 24 23 27 27 N 1.30720 * 125.52591 * 74.68817 * 22 2 1 28 28 H 1.09006 * 109.46262 * 299.99792 * 1 2 3 29 29 H 1.08998 * 109.47127 * 59.99505 * 1 2 3 30 30 H 1.08997 * 109.47543 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99896 * 276.53568 * 4 2 1 32 32 H 1.07995 * 119.87770 * 359.97438 * 9 8 5 33 33 H 1.07999 * 119.74866 * 179.97438 * 10 9 8 34 34 H 1.07997 * 119.87769 * 179.97438 * 11 10 9 35 35 H 1.08002 * 120.12810 * 179.97438 * 12 11 10 36 36 H 0.97001 * 119.99530 * 180.02562 * 17 16 14 37 37 H 1.08002 * 125.96730 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 16 2.4417 0.1799 -2.5399 6 8 2.8998 -0.7621 -3.5003 7 8 1.3730 1.0835 -2.7859 8 6 3.8363 1.1651 -2.1050 9 6 3.7358 2.5378 -2.0940 10 6 4.8314 3.3154 -1.7528 11 6 6.0391 2.7217 -1.4186 12 6 6.1625 1.3512 -1.4229 13 6 5.0551 0.5516 -1.7620 14 6 5.1682 -0.8578 -1.7636 15 1 4.3027 -1.4693 -1.5554 16 6 6.4018 -1.4604 -2.0353 17 7 6.6088 -2.7075 -1.6983 18 14 7.7525 -0.4842 -2.8790 19 1 8.6642 0.0864 -1.8550 20 1 8.5202 -1.3794 -3.7815 21 1 7.1470 0.6162 -3.6711 22 6 2.0324 -0.7105 1.2303 23 7 2.5551 -0.1218 2.3052 24 6 2.8891 -1.0269 3.1888 25 7 2.5797 -2.2347 2.6861 26 1 2.7125 -3.0944 3.1152 27 7 2.0207 -2.0040 1.4185 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 2.0897 -1.6580 -1.2026 32 1 2.8002 3.0109 -2.3529 33 1 4.7437 4.3918 -1.7471 34 1 6.8864 3.3372 -1.1547 35 1 7.1042 0.8909 -1.1626 36 1 7.4639 -3.1250 -1.8862 37 1 3.3355 -0.8371 4.1537 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619573045.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:19 Heat of formation + Delta-G solvation = 31.457527 kcal Electronic energy + Delta-G solvation = -25768.809660 eV Core-core repulsion = 22060.751511 eV Total energy + Delta-G solvation = -3708.058149 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.94803 -37.83352 -36.45462 -35.93658 -34.86284 -33.84747 -32.24227 -30.88820 -30.66248 -30.07266 -29.19834 -25.40057 -24.08789 -22.40755 -22.01284 -21.17879 -20.07583 -18.79283 -18.20696 -17.72994 -16.97426 -16.41564 -15.96980 -15.37593 -15.21257 -14.70126 -14.22501 -14.18707 -13.77930 -13.67094 -13.45070 -13.04554 -12.79079 -12.25017 -12.15507 -11.97388 -11.86299 -11.35367 -11.29576 -11.15132 -11.09756 -10.98211 -10.89907 -10.74296 -10.38669 -9.97610 -9.95450 -9.90166 -9.69482 -9.53310 -9.33326 -8.92995 -8.22095 -7.81068 -7.21997 -4.83643 1.44934 1.77094 2.11089 2.56306 2.77699 2.97410 3.03137 3.09451 3.20762 3.80185 3.86312 4.17713 4.29669 4.68444 4.84123 5.01612 5.10758 5.37786 5.46311 5.55338 5.68821 5.87414 5.95543 6.00461 6.22804 6.26003 6.36950 6.40148 6.48759 6.55171 6.67941 6.95582 7.13089 7.13389 7.27696 7.41081 7.55432 7.60109 7.82750 8.07035 8.22065 8.30032 8.51431 9.77395 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.011330 B = 0.006775 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.660159 B = 4131.947422 C = 4904.806483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.255 3.745 3 H 0.110 0.890 4 N -1.111 6.111 5 S 2.701 3.299 6 O -0.958 6.958 7 O -0.991 6.991 8 C -0.772 4.772 9 C 0.018 3.982 10 C -0.259 4.259 11 C -0.042 4.042 12 C -0.235 4.235 13 C 0.162 3.838 14 C -0.427 4.427 15 H 0.102 0.898 16 C 0.090 3.910 17 N -0.779 5.779 18 Si 0.913 3.087 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.239 1.239 22 C 0.233 3.767 23 N -0.532 5.532 24 C 0.258 3.742 25 N -0.484 5.484 26 H 0.440 0.560 27 N -0.299 5.299 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.419 0.581 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.291 0.709 37 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.793 1.313 9.158 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.144 3.856 3 H 0.128 0.872 4 N -0.867 5.867 5 S 2.797 3.203 6 O -0.949 6.949 7 O -0.981 6.981 8 C -0.867 4.867 9 C -0.002 4.002 10 C -0.280 4.280 11 C -0.061 4.061 12 C -0.254 4.254 13 C 0.157 3.843 14 C -0.454 4.454 15 H 0.119 0.881 16 C -0.133 4.133 17 N -0.400 5.400 18 Si 0.738 3.262 19 H -0.194 1.194 20 H -0.211 1.211 21 H -0.161 1.161 22 C -0.051 4.051 23 N -0.260 5.260 24 C -0.041 4.041 25 N -0.202 5.202 26 H 0.285 0.715 27 N -0.128 5.128 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.253 0.747 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.397 1.043 7.847 9.581 hybrid contribution 1.807 -0.546 0.970 2.122 sum -3.589 0.498 8.817 9.533 Atomic orbital electron populations 1.22310 0.93440 1.03120 1.03487 1.18715 0.93902 0.94891 0.78064 0.87168 1.55813 1.82146 1.19518 1.29231 1.01196 0.73576 0.73121 0.72367 1.93568 1.82075 1.62041 1.57169 1.93464 1.54774 1.65769 1.84138 1.29915 1.17254 1.06081 1.33409 1.20410 0.97337 0.91935 0.90479 1.20479 0.94536 0.97830 1.15130 1.20817 0.96251 0.94466 0.94523 1.21149 0.99137 0.93820 1.11337 1.17015 0.89755 0.92652 0.84889 1.19799 0.97507 0.90356 1.37754 0.88062 1.26198 0.99363 0.95179 0.92572 1.69664 1.25471 1.13030 1.31840 0.86298 0.79304 0.80479 0.80087 1.19381 1.21118 1.16146 1.24280 0.96783 0.88322 0.95764 1.70381 1.19774 1.33785 1.02110 1.26027 0.97052 0.81182 0.99889 1.48092 1.48183 1.09981 1.13964 0.71513 1.77924 1.20749 1.17477 0.96661 0.91495 0.89822 0.91774 0.74679 0.86708 0.88090 0.88329 0.87771 0.89819 0.76345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.50 37.16 0.35 -1.96 16 2 C 0.26 4.36 3.32 -69.08 -0.23 4.13 16 3 H 0.11 1.91 7.85 -51.93 -0.41 1.50 16 4 N -1.11 -21.10 4.55 -5.88 -0.03 -21.13 16 5 S 2.70 59.16 4.86 -107.50 -0.52 58.63 16 6 O -0.96 -24.12 16.62 -57.17 -0.95 -25.07 16 7 O -0.99 -21.50 16.37 -57.17 -0.94 -22.44 16 8 C -0.77 -18.07 5.81 -38.87 -0.23 -18.30 16 9 C 0.02 0.39 9.53 -39.66 -0.38 0.01 16 10 C -0.26 -5.32 10.05 -39.29 -0.39 -5.71 16 11 C -0.04 -0.88 10.02 -39.66 -0.40 -1.28 16 12 C -0.23 -5.55 7.17 -38.87 -0.28 -5.83 16 13 C 0.16 4.06 5.12 -106.82 -0.55 3.52 16 14 C -0.43 -11.25 8.14 -37.74 -0.31 -11.55 16 15 H 0.10 2.71 5.95 -52.49 -0.31 2.39 16 16 C 0.09 2.31 5.41 -17.34 -0.09 2.22 16 17 N -0.78 -19.87 13.93 55.55 0.77 -19.10 16 18 Si 0.91 20.50 24.49 -169.99 -4.16 16.34 16 19 H -0.27 -5.66 6.69 56.52 0.38 -5.29 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.24 -5.59 6.84 56.52 0.39 -5.20 16 22 C 0.23 4.00 6.98 -156.85 -1.09 2.91 16 23 N -0.53 -8.61 11.19 -11.98 -0.13 -8.75 16 24 C 0.26 3.04 13.13 -90.66 -1.19 1.85 16 25 N -0.48 -5.84 7.45 29.53 0.22 -5.62 16 26 H 0.44 3.52 8.96 -182.33 -1.63 1.88 16 27 N -0.30 -4.89 12.54 32.42 0.41 -4.48 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.20 7.78 -51.93 -0.40 0.79 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.42 7.82 8.36 -34.48 -0.29 7.53 16 32 H 0.12 2.22 7.32 -52.49 -0.38 1.84 16 33 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.10 2.40 4.62 -52.49 -0.24 2.16 16 36 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 37 H 0.22 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -33.85 326.42 -10.16 -44.01 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -4.96 Total: 12.68 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: -4.78 Total: -30.00 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 1.24 Total: -59.07 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -1.89 Total: -47.51 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.16 Total: 16.34 kcal Atomic # 16 Polarization: 59.16 SS G_CDS: -0.52 Total: 58.63 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.85 -10.16 -44.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573045.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.467 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds