Wall clock time and date at job start Fri Apr 10 2020 18:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47543 * 2 1 4 4 N 1.46508 * 109.46635 * 240.00183 * 2 1 3 5 5 S 1.65604 * 119.99482 * 96.26544 * 4 2 1 6 6 O 1.42109 * 106.39881 * 178.55352 * 5 4 2 7 7 O 1.42100 * 106.40387 * 311.47167 * 5 4 2 8 8 C 1.76196 * 107.22088 * 65.01709 * 5 4 2 9 9 C 1.37641 * 120.12578 * 244.89698 * 8 5 4 10 10 C 1.38611 * 120.24836 * 180.02562 * 9 8 5 11 11 C 1.38658 * 120.50218 * 359.97438 * 10 9 8 12 12 C 1.37600 * 120.24904 * 0.02562 * 11 10 9 13 13 C 1.40703 * 120.13027 * 64.61933 * 8 5 4 14 14 C 1.41390 * 120.24190 * 359.97438 * 13 8 5 15 15 H 1.08001 * 120.00619 * 330.66490 * 14 13 8 16 16 C 1.39949 * 119.99734 * 150.65807 * 14 13 8 17 17 N 1.30827 * 119.99681 * 161.80749 * 16 14 13 18 18 Si 1.86799 * 120.00007 * 341.80606 * 16 14 13 19 19 H 1.48502 * 109.46886 * 95.28274 * 18 16 14 20 20 H 1.48499 * 109.47179 * 215.28159 * 18 16 14 21 21 H 1.48494 * 109.47030 * 335.28006 * 18 16 14 22 22 C 1.50694 * 109.47249 * 120.00504 * 2 1 3 23 23 N 1.33238 * 125.53002 * 254.99723 * 22 2 1 24 24 C 1.30825 * 109.83408 * 180.02562 * 23 22 2 25 25 N 1.34434 * 108.07841 * 359.97438 * 24 23 22 26 26 H 0.96998 * 126.82286 * 180.02562 * 25 24 23 27 27 N 1.30720 * 125.52591 * 74.68817 * 22 2 1 28 28 H 1.09006 * 109.46262 * 299.99792 * 1 2 3 29 29 H 1.08998 * 109.47127 * 59.99505 * 1 2 3 30 30 H 1.08997 * 109.47543 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99896 * 276.53568 * 4 2 1 32 32 H 1.07995 * 119.87770 * 359.97438 * 9 8 5 33 33 H 1.07999 * 119.74866 * 179.97438 * 10 9 8 34 34 H 1.07997 * 119.87769 * 179.97438 * 11 10 9 35 35 H 1.08002 * 120.12810 * 179.97438 * 12 11 10 36 36 H 0.97001 * 119.99530 * 180.02562 * 17 16 14 37 37 H 1.08002 * 125.96730 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 16 2.4417 0.1799 -2.5399 6 8 2.8998 -0.7621 -3.5003 7 8 1.3730 1.0835 -2.7859 8 6 3.8363 1.1651 -2.1050 9 6 3.7358 2.5378 -2.0940 10 6 4.8314 3.3154 -1.7528 11 6 6.0391 2.7217 -1.4186 12 6 6.1625 1.3512 -1.4229 13 6 5.0551 0.5516 -1.7620 14 6 5.1682 -0.8578 -1.7636 15 1 4.3027 -1.4693 -1.5554 16 6 6.4018 -1.4604 -2.0353 17 7 6.6088 -2.7075 -1.6983 18 14 7.7525 -0.4842 -2.8790 19 1 8.6642 0.0864 -1.8550 20 1 8.5202 -1.3794 -3.7815 21 1 7.1470 0.6162 -3.6711 22 6 2.0324 -0.7105 1.2303 23 7 2.5551 -0.1218 2.3052 24 6 2.8891 -1.0269 3.1888 25 7 2.5797 -2.2347 2.6861 26 1 2.7125 -3.0944 3.1152 27 7 2.0207 -2.0040 1.4185 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 2.0897 -1.6580 -1.2026 32 1 2.8002 3.0109 -2.3529 33 1 4.7437 4.3918 -1.7471 34 1 6.8864 3.3372 -1.1547 35 1 7.1042 0.8909 -1.1626 36 1 7.4639 -3.1250 -1.8862 37 1 3.3355 -0.8371 4.1537 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619573045.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:19 Heat of formation + Delta-G solvation = 5.912297 kcal Electronic energy + Delta-G solvation = -25769.917385 eV Core-core repulsion = 22060.751511 eV Total energy + Delta-G solvation = -3709.165873 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.04209 -39.58595 -38.15441 -37.40093 -36.70052 -35.67100 -33.37922 -32.51805 -32.00826 -31.80399 -30.47484 -27.21449 -25.29153 -23.77555 -23.43166 -22.95825 -21.33670 -20.37797 -19.58017 -19.35432 -18.61392 -18.07456 -17.44393 -17.08293 -16.40522 -16.17729 -15.90338 -15.50817 -15.48023 -15.24265 -14.94339 -14.59417 -14.32762 -14.01775 -13.64937 -13.43078 -13.09143 -13.07886 -13.00103 -12.89554 -12.70565 -12.64142 -12.53384 -12.34482 -12.16283 -11.73058 -11.40587 -11.11500 -11.06410 -11.03728 -10.70847 -10.46628 -9.95707 -9.59207 -9.07040 -6.72520 -0.25663 0.34946 0.70684 0.78890 1.18257 1.33667 1.41601 1.83385 1.85794 2.02323 2.29496 2.49968 2.89731 3.13679 3.30832 3.72147 3.79677 3.94763 4.18986 4.24733 4.31846 4.34685 4.42652 4.63991 4.71271 4.84951 4.91497 5.08526 5.18306 5.21557 5.29759 5.37631 5.39842 5.56687 5.64731 5.84167 5.99121 6.03677 6.22742 6.30359 6.48770 6.67144 7.13062 7.98292 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.011330 B = 0.006775 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.660159 B = 4131.947422 C = 4904.806483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.248 3.752 3 H 0.103 0.897 4 N -1.104 6.104 5 S 2.717 3.283 6 O -0.997 6.997 7 O -0.991 6.991 8 C -0.785 4.785 9 C 0.004 3.996 10 C -0.247 4.247 11 C -0.038 4.038 12 C -0.260 4.260 13 C 0.149 3.851 14 C -0.464 4.464 15 H 0.081 0.919 16 C 0.055 3.945 17 N -0.815 5.815 18 Si 0.954 3.046 19 H -0.245 1.245 20 H -0.273 1.273 21 H -0.256 1.256 22 C 0.217 3.783 23 N -0.571 5.571 24 C 0.273 3.727 25 N -0.474 5.474 26 H 0.457 0.543 27 N -0.330 5.330 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.418 0.582 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.106 0.894 36 H 0.300 0.700 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 3.450 10.637 11.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.138 3.862 3 H 0.121 0.879 4 N -0.862 5.862 5 S 2.813 3.187 6 O -0.988 6.988 7 O -0.981 6.981 8 C -0.879 4.879 9 C -0.015 4.015 10 C -0.266 4.266 11 C -0.057 4.057 12 C -0.280 4.280 13 C 0.144 3.856 14 C -0.492 4.492 15 H 0.099 0.901 16 C -0.164 4.164 17 N -0.438 5.438 18 Si 0.776 3.224 19 H -0.170 1.170 20 H -0.199 1.199 21 H -0.180 1.180 22 C -0.067 4.067 23 N -0.300 5.300 24 C -0.025 4.025 25 N -0.194 5.194 26 H 0.306 0.694 27 N -0.161 5.161 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.253 0.747 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -4.884 3.161 9.355 11.016 hybrid contribution 1.541 -1.061 0.623 1.972 sum -3.343 2.100 9.978 10.730 Atomic orbital electron populations 1.22257 0.91316 1.03710 1.04291 1.18921 0.95572 0.94263 0.77486 0.87877 1.55527 1.81953 1.19266 1.29469 1.00577 0.73196 0.72631 0.72298 1.93512 1.82706 1.63191 1.59363 1.93450 1.54416 1.65766 1.84466 1.30168 1.17374 1.07411 1.32954 1.20804 0.98954 0.91315 0.90462 1.21026 0.93558 0.99885 1.12175 1.21303 0.97848 0.93810 0.92708 1.21331 0.98936 0.95145 1.12585 1.17215 0.90993 0.92477 0.84899 1.19825 0.97515 0.91133 1.40733 0.90111 1.26810 1.00804 0.95961 0.92838 1.69673 1.26571 1.13977 1.33616 0.85684 0.77797 0.79139 0.79733 1.16982 1.19942 1.17990 1.24211 0.97667 0.88685 0.96167 1.70341 1.21354 1.35530 1.02802 1.27036 0.94791 0.80051 1.00590 1.48032 1.47350 1.11278 1.12725 0.69446 1.77813 1.21962 1.17388 0.98899 0.89454 0.90103 0.91316 0.74692 0.84641 0.84068 0.84355 0.87634 0.88956 0.71015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 9.50 71.98 0.68 -3.65 16 2 C 0.25 8.52 3.32 44.24 0.15 8.67 16 3 H 0.10 3.61 7.85 -2.39 -0.02 3.60 16 4 N -1.10 -43.32 4.55 -172.52 -0.79 -44.11 16 5 S 2.72 121.52 4.86 -56.49 -0.27 121.24 16 6 O -1.00 -52.28 16.62 -128.00 -2.13 -54.41 16 7 O -0.99 -42.86 16.37 -128.00 -2.09 -44.95 16 8 C -0.79 -36.70 5.81 22.73 0.13 -36.56 16 9 C 0.00 0.17 9.53 22.22 0.21 0.39 16 10 C -0.25 -9.17 10.05 22.46 0.23 -8.94 16 11 C -0.04 -1.49 10.02 22.22 0.22 -1.27 16 12 C -0.26 -11.97 7.17 22.73 0.16 -11.80 16 13 C 0.15 7.52 5.12 -21.29 -0.11 7.41 16 14 C -0.46 -25.31 8.14 23.46 0.19 -25.12 16 15 H 0.08 4.58 5.95 -2.91 -0.02 4.56 16 16 C 0.06 2.90 5.41 85.26 0.46 3.37 16 17 N -0.81 -42.94 13.93 21.83 0.30 -42.64 16 18 Si 0.95 42.04 24.49 68.60 1.68 43.72 16 19 H -0.25 -9.76 6.69 99.48 0.67 -9.09 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 H -0.26 -11.86 6.84 99.48 0.68 -11.18 16 22 C 0.22 7.46 6.98 138.63 0.97 8.43 16 23 N -0.57 -17.92 11.19 -191.81 -2.15 -20.06 16 24 C 0.27 5.85 13.13 180.36 2.37 8.22 16 25 N -0.47 -10.83 7.45 -60.49 -0.45 -11.28 16 26 H 0.46 6.61 8.96 -213.10 -1.91 4.70 16 27 N -0.33 -10.83 12.54 -51.34 -0.64 -11.48 16 28 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.08 2.27 7.78 -2.39 -0.02 2.25 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.42 16.55 8.36 -96.74 -0.81 15.74 16 32 H 0.14 4.92 7.32 -2.91 -0.02 4.90 16 33 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 34 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 35 H 0.11 4.73 4.62 -2.91 -0.01 4.72 16 36 H 0.30 14.06 8.30 -92.71 -0.77 13.30 16 37 H 0.27 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -75.05 326.42 -2.51 -77.56 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: -1.63 Total: 37.27 kcal Atomic # 6 Polarization: -56.53 SS G_CDS: 5.66 Total: -50.86 kcal Atomic # 7 Polarization: -125.85 SS G_CDS: -3.72 Total: -129.57 kcal Atomic # 8 Polarization: -95.14 SS G_CDS: -4.22 Total: -99.36 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.68 Total: 43.72 kcal Atomic # 16 Polarization: 121.52 SS G_CDS: -0.27 Total: 121.24 kcal Total: -75.05 -2.51 -77.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573045.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.472 kcal (2) G-P(sol) polarization free energy of solvation -75.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds