Wall clock time and date at job start Fri Apr 10 2020 18:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99954 * 2 1 4 4 H 1.48501 * 109.46963 * 269.99881 * 3 2 1 5 5 H 1.48505 * 109.47551 * 29.99039 * 3 2 1 6 6 H 1.48494 * 109.47559 * 149.99697 * 3 2 1 7 7 C 1.38944 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00086 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99839 * 180.02562 * 7 2 1 10 10 C 1.34782 * 119.99896 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99922 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99776 * 180.02562 * 10 9 7 13 13 O 1.45204 * 109.46797 * 179.97438 * 12 10 9 14 14 C 1.34752 * 116.99850 * 180.02562 * 13 12 10 15 15 O 1.21498 * 120.00185 * 359.97438 * 14 13 12 16 16 C 1.47473 * 119.99783 * 180.02562 * 14 13 12 17 17 C 1.39794 * 120.08904 * 180.02562 * 16 14 13 18 18 C 1.37679 * 119.90398 * 180.29757 * 17 16 14 19 19 C 1.39021 * 120.09068 * 359.43972 * 18 17 16 20 20 O 1.35694 * 119.90499 * 180.28089 * 19 18 17 21 21 C 1.42899 * 117.00093 * 0.27444 * 20 19 18 22 22 C 1.50701 * 109.47130 * 179.97438 * 21 20 19 23 23 N 1.34781 * 119.99844 * 179.97438 * 22 21 20 24 24 O 1.21277 * 120.00219 * 0.02562 * 22 21 20 25 25 C 1.39012 * 120.18607 * 0.55640 * 19 18 17 26 26 C 1.37681 * 120.09185 * 359.72844 * 25 19 18 27 27 H 0.97001 * 119.99607 * 0.02562 * 1 2 3 28 28 H 0.97003 * 120.00427 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47314 * 59.99737 * 12 10 9 30 30 H 1.09001 * 109.47073 * 299.99133 * 12 10 9 31 31 H 1.08002 * 120.04587 * 0.02562 * 17 16 14 32 32 H 1.07998 * 119.95594 * 179.72119 * 18 17 16 33 33 H 1.09000 * 109.47555 * 299.99716 * 21 20 19 34 34 H 1.09000 * 109.46918 * 60.00321 * 21 20 19 35 35 H 0.96996 * 120.00229 * 0.02562 * 23 22 21 36 36 H 0.97005 * 119.99743 * 180.02562 * 23 22 21 37 37 H 1.08000 * 119.95324 * 179.69751 * 25 19 18 38 38 H 1.08005 * 120.04549 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6528 0.6998 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1385 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4208 0.0011 12 6 5.5608 -2.3704 0.0022 13 8 6.0448 -3.7394 0.0026 14 6 7.3807 -3.9159 0.0042 15 8 8.1208 -2.9523 0.0047 16 6 7.9444 -5.2786 0.0041 17 6 9.3300 -5.4640 0.0063 18 6 9.8521 -6.7379 0.0000 19 6 9.0035 -7.8390 0.0032 20 8 9.5222 -9.0929 0.0027 21 6 10.9467 -9.2057 0.0049 22 6 11.3353 -10.6617 0.0047 23 7 12.6368 -11.0118 0.0060 24 8 10.4769 -11.5185 0.0023 25 6 7.6250 -7.6591 0.0012 26 6 7.0947 -6.3886 0.0015 27 1 -0.4849 0.8401 -0.0004 28 1 3.8649 -0.3632 0.0014 29 1 5.9234 -1.8569 0.8927 30 1 5.9248 -1.8562 -0.8873 31 1 9.9899 -4.6090 0.0084 32 1 10.9224 -6.8820 -0.0029 33 1 11.3510 -8.7213 -0.8839 34 1 11.3480 -8.7231 0.8961 35 1 13.3234 -10.3267 0.0075 36 1 12.8870 -11.9491 0.0055 37 1 6.9692 -8.5172 -0.0012 38 1 6.0236 -6.2497 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731236822.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:27 Heat of formation + Delta-G solvation = -157.933232 kcal Electronic energy + Delta-G solvation = -25021.105025 eV Core-core repulsion = 20829.788654 eV Total energy + Delta-G solvation = -4191.316371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.00378 -40.34059 -39.50055 -38.35874 -37.43912 -36.10702 -34.36696 -34.05019 -31.79621 -31.56706 -31.11423 -29.01369 -28.35831 -24.80269 -23.70471 -23.28052 -21.37383 -20.87157 -19.63645 -18.94954 -18.58325 -18.41426 -17.77105 -17.04382 -16.95459 -16.60416 -16.36928 -15.92903 -15.61499 -15.02551 -14.83877 -14.79576 -14.34193 -14.19613 -13.94695 -13.78685 -13.32243 -13.00522 -12.94739 -12.70995 -12.43375 -12.23056 -12.15322 -11.56346 -11.28035 -11.25507 -10.64290 -10.56584 -10.55128 -10.51346 -10.37597 -10.03970 -9.66517 -9.42232 -8.69214 -8.65655 -8.28132 -6.38075 -3.90944 0.51709 1.00925 1.93643 2.08119 2.45807 2.61478 2.99678 3.04283 3.12975 3.22181 3.51347 3.57816 4.04796 4.05736 4.27461 4.36995 4.38075 4.44519 4.46367 4.84962 4.91941 5.07126 5.12511 5.26064 5.35464 5.56393 5.66116 5.69244 5.78904 5.86614 6.07761 6.09059 6.28621 6.49493 6.56966 6.84686 7.45960 7.57466 7.80409 8.02221 8.49009 8.84942 9.31116 9.66756 10.74202 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.041026 B = 0.001880 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.334000 B =14888.463544 C =15550.350168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.123 0.877 9 N -0.580 5.580 10 C 0.448 3.552 11 O -0.557 6.557 12 C 0.059 3.941 13 O -0.320 6.320 14 C 0.509 3.491 15 O -0.516 6.516 16 C -0.159 4.159 17 C -0.013 4.013 18 C -0.227 4.227 19 C 0.160 3.840 20 O -0.285 6.285 21 C 0.036 3.964 22 C 0.519 3.481 23 N -0.851 5.851 24 O -0.515 6.515 25 C -0.159 4.159 26 C -0.014 4.014 27 H 0.275 0.725 28 H 0.373 0.627 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.404 0.596 36 H 0.409 0.591 37 H 0.144 0.856 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.104 -14.291 0.000 32.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.140 0.860 9 N -0.220 5.220 10 C 0.233 3.767 11 O -0.438 6.438 12 C -0.018 4.018 13 O -0.235 6.235 14 C 0.355 3.645 15 O -0.407 6.407 16 C -0.160 4.160 17 C -0.031 4.031 18 C -0.246 4.246 19 C 0.114 3.886 20 O -0.197 6.197 21 C -0.043 4.043 22 C 0.302 3.698 23 N -0.418 5.418 24 O -0.389 6.389 25 C -0.177 4.177 26 C -0.032 4.032 27 H 0.086 0.914 28 H 0.206 0.794 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.160 0.840 32 H 0.154 0.846 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.232 0.768 36 H 0.242 0.758 37 H 0.162 0.838 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 27.829 -15.194 -0.002 31.707 hybrid contribution 1.388 1.754 0.019 2.237 sum 29.217 -13.439 0.018 32.160 Atomic orbital electron populations 1.69616 1.05649 1.27734 1.48419 1.25033 0.95514 0.98045 0.97283 0.86680 0.79861 0.83887 0.79075 1.19427 1.19969 1.19351 1.19427 0.78678 0.96886 1.48638 0.85987 1.42033 1.07627 1.05705 1.66599 1.19186 0.86911 0.85145 0.85458 1.90601 1.69037 1.30704 1.53495 1.22760 0.95103 0.80319 1.03665 1.86598 1.22471 1.31216 1.83194 1.21081 0.81053 0.89652 0.72740 1.90811 1.60668 1.42373 1.46880 1.19047 0.93793 0.90453 1.12745 1.21015 0.93402 0.97145 0.91515 1.21109 0.99821 0.92042 1.11599 1.19363 0.93257 0.82873 0.93153 1.86134 1.20473 1.25145 1.87914 1.22514 0.81914 0.95385 1.04456 1.20037 0.83121 0.90357 0.76250 1.43651 1.06867 1.12616 1.78626 1.90839 1.49272 1.51705 1.47090 1.20482 0.91810 0.98369 1.07075 1.21519 1.01370 0.90169 0.90171 0.91405 0.79389 0.89340 0.89326 0.84048 0.84628 0.88385 0.88395 0.76795 0.75844 0.83844 0.82691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.14 13.96 55.50 0.77 -24.36 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.02 27.74 -169.99 -4.71 14.31 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 7 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.88 7.39 -52.49 -0.39 3.50 16 9 N -0.58 -13.71 5.09 -10.97 -0.06 -13.77 16 10 C 0.45 10.32 7.86 -10.98 -0.09 10.24 16 11 O -0.56 -15.15 16.08 -14.11 -0.23 -15.38 16 12 C 0.06 1.06 5.95 36.01 0.21 1.27 16 13 O -0.32 -5.73 9.00 -47.31 -0.43 -6.16 16 14 C 0.51 7.97 7.89 34.49 0.27 8.24 16 15 O -0.52 -8.68 16.13 -19.26 -0.31 -8.99 16 16 C -0.16 -2.02 5.87 -104.98 -0.62 -2.63 16 17 C -0.01 -0.13 9.59 -39.20 -0.38 -0.50 16 18 C -0.23 -1.80 9.01 -39.50 -0.36 -2.15 16 19 C 0.16 1.53 6.70 -39.00 -0.26 1.27 16 20 O -0.29 -2.73 9.66 -38.69 -0.37 -3.10 16 21 C 0.04 0.18 5.21 36.01 0.19 0.37 16 22 C 0.52 3.46 8.18 -10.98 -0.09 3.37 16 23 N -0.85 -1.71 8.87 31.22 0.28 -1.43 16 24 O -0.52 -6.36 17.34 -14.35 -0.25 -6.60 16 25 C -0.16 -1.68 9.97 -39.50 -0.39 -2.07 16 26 C -0.01 -0.17 9.61 -39.21 -0.38 -0.54 16 27 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.14 1.28 7.64 -52.49 -0.40 0.88 16 32 H 0.14 0.57 6.28 -52.49 -0.33 0.25 16 33 H 0.10 0.23 7.64 -51.93 -0.40 -0.17 16 34 H 0.10 0.23 7.66 -51.93 -0.40 -0.17 16 35 H 0.40 -0.60 8.83 -40.82 -0.36 -0.96 16 36 H 0.41 0.61 8.93 -40.82 -0.36 0.25 16 37 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.16 1.92 7.60 -52.48 -0.40 1.53 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -38.52 346.46 -5.92 -44.44 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -3.71 Total: 6.61 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -2.13 Total: 9.22 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 1.00 Total: -39.56 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -1.59 Total: -40.24 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -38.52 -5.92 -44.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236822.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.491 kcal (2) G-P(sol) polarization free energy of solvation -38.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds