Wall clock time and date at job start Fri Apr 10 2020 18:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99954 * 2 1 4 4 H 1.48501 * 109.46963 * 269.99881 * 3 2 1 5 5 H 1.48505 * 109.47551 * 29.99039 * 3 2 1 6 6 H 1.48494 * 109.47559 * 149.99697 * 3 2 1 7 7 C 1.38944 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00086 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99839 * 180.02562 * 7 2 1 10 10 C 1.34782 * 119.99896 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99922 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99776 * 180.02562 * 10 9 7 13 13 O 1.45204 * 109.46797 * 179.97438 * 12 10 9 14 14 C 1.34752 * 116.99850 * 180.02562 * 13 12 10 15 15 O 1.21498 * 120.00185 * 359.97438 * 14 13 12 16 16 C 1.47473 * 119.99783 * 180.02562 * 14 13 12 17 17 C 1.39794 * 120.08904 * 180.02562 * 16 14 13 18 18 C 1.37679 * 119.90398 * 180.29757 * 17 16 14 19 19 C 1.39021 * 120.09068 * 359.43972 * 18 17 16 20 20 O 1.35694 * 119.90499 * 180.28089 * 19 18 17 21 21 C 1.42899 * 117.00093 * 0.27444 * 20 19 18 22 22 C 1.50701 * 109.47130 * 179.97438 * 21 20 19 23 23 N 1.34781 * 119.99844 * 179.97438 * 22 21 20 24 24 O 1.21277 * 120.00219 * 0.02562 * 22 21 20 25 25 C 1.39012 * 120.18607 * 0.55640 * 19 18 17 26 26 C 1.37681 * 120.09185 * 359.72844 * 25 19 18 27 27 H 0.97001 * 119.99607 * 0.02562 * 1 2 3 28 28 H 0.97003 * 120.00427 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47314 * 59.99737 * 12 10 9 30 30 H 1.09001 * 109.47073 * 299.99133 * 12 10 9 31 31 H 1.08002 * 120.04587 * 0.02562 * 17 16 14 32 32 H 1.07998 * 119.95594 * 179.72119 * 18 17 16 33 33 H 1.09000 * 109.47555 * 299.99716 * 21 20 19 34 34 H 1.09000 * 109.46918 * 60.00321 * 21 20 19 35 35 H 0.96996 * 120.00229 * 0.02562 * 23 22 21 36 36 H 0.97005 * 119.99743 * 180.02562 * 23 22 21 37 37 H 1.08000 * 119.95324 * 179.69751 * 25 19 18 38 38 H 1.08005 * 120.04549 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6528 0.6998 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1385 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4208 0.0011 12 6 5.5608 -2.3704 0.0022 13 8 6.0448 -3.7394 0.0026 14 6 7.3807 -3.9159 0.0042 15 8 8.1208 -2.9523 0.0047 16 6 7.9444 -5.2786 0.0041 17 6 9.3300 -5.4640 0.0063 18 6 9.8521 -6.7379 0.0000 19 6 9.0035 -7.8390 0.0032 20 8 9.5222 -9.0929 0.0027 21 6 10.9467 -9.2057 0.0049 22 6 11.3353 -10.6617 0.0047 23 7 12.6368 -11.0118 0.0060 24 8 10.4769 -11.5185 0.0023 25 6 7.6250 -7.6591 0.0012 26 6 7.0947 -6.3886 0.0015 27 1 -0.4849 0.8401 -0.0004 28 1 3.8649 -0.3632 0.0014 29 1 5.9234 -1.8569 0.8927 30 1 5.9248 -1.8562 -0.8873 31 1 9.9899 -4.6090 0.0084 32 1 10.9224 -6.8820 -0.0029 33 1 11.3510 -8.7213 -0.8839 34 1 11.3480 -8.7231 0.8961 35 1 13.3234 -10.3267 0.0075 36 1 12.8870 -11.9491 0.0055 37 1 6.9692 -8.5172 -0.0012 38 1 6.0236 -6.2497 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731236822.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:27 Heat of formation + Delta-G solvation = -188.451467 kcal Electronic energy + Delta-G solvation = -25022.428395 eV Core-core repulsion = 20829.788654 eV Total energy + Delta-G solvation = -4192.639741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.86285 -41.32230 -40.32496 -39.99788 -38.28502 -37.40630 -36.08259 -34.78766 -33.86709 -32.30808 -31.97248 -30.12688 -29.27916 -26.57527 -24.82392 -24.00730 -22.10366 -21.69596 -21.53161 -20.52346 -19.59800 -19.19700 -18.49441 -18.07615 -17.71574 -17.46777 -17.41586 -17.33684 -16.77059 -16.55876 -15.82826 -15.71400 -15.42118 -15.41794 -14.96521 -14.79584 -14.57063 -14.29024 -14.13658 -14.10916 -13.62803 -13.48262 -13.43530 -12.99965 -12.45786 -12.16337 -12.02294 -11.99797 -11.86747 -11.74501 -11.58570 -11.13096 -10.73987 -10.60793 -10.33960 -10.18302 -9.46099 -8.45796 -6.09108 -0.37010 0.25729 1.29475 1.33891 1.35651 1.41322 1.46045 1.49219 1.61007 1.76075 2.20686 2.67136 2.78135 2.83196 3.08596 3.59701 3.63502 3.80353 3.87205 3.94570 4.07166 4.10690 4.13133 4.14204 4.14953 4.31064 4.51033 4.92117 4.97886 5.07198 5.25917 5.29552 5.47978 5.49553 5.82385 5.85407 6.16325 6.41765 6.46197 6.61840 6.77570 7.25696 7.26896 7.77791 8.70831 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.041026 B = 0.001880 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.334000 B =14888.463544 C =15550.350168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.962 3.038 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.231 1.231 7 C -0.334 4.334 8 H 0.060 0.940 9 N -0.575 5.575 10 C 0.448 3.552 11 O -0.608 6.608 12 C 0.069 3.931 13 O -0.343 6.343 14 C 0.511 3.489 15 O -0.529 6.529 16 C -0.184 4.184 17 C -0.007 4.007 18 C -0.208 4.208 19 C 0.168 3.832 20 O -0.310 6.310 21 C 0.026 3.974 22 C 0.515 3.485 23 N -0.825 5.825 24 O -0.586 6.586 25 C -0.172 4.172 26 C -0.024 4.024 27 H 0.282 0.718 28 H 0.393 0.607 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.157 0.843 32 H 0.184 0.816 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.424 0.576 36 H 0.414 0.586 37 H 0.143 0.857 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.189 -12.605 0.037 36.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.781 3.219 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.154 1.154 7 C -0.463 4.463 8 H 0.078 0.922 9 N -0.217 5.217 10 C 0.235 3.765 11 O -0.493 6.493 12 C -0.008 4.008 13 O -0.258 6.258 14 C 0.358 3.642 15 O -0.421 6.421 16 C -0.185 4.185 17 C -0.025 4.025 18 C -0.226 4.226 19 C 0.121 3.879 20 O -0.222 6.222 21 C -0.051 4.051 22 C 0.299 3.701 23 N -0.392 5.392 24 O -0.465 6.465 25 C -0.191 4.191 26 C -0.042 4.042 27 H 0.092 0.908 28 H 0.229 0.771 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.174 0.826 32 H 0.201 0.799 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.256 0.744 36 H 0.246 0.754 37 H 0.161 0.839 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 33.013 -13.495 0.037 35.665 hybrid contribution -0.107 0.995 0.004 1.001 sum 32.906 -12.500 0.041 35.200 Atomic orbital electron populations 1.69787 1.08101 1.29560 1.49056 1.26096 0.96464 1.02661 0.95526 0.85408 0.79585 0.76684 0.80181 1.17906 1.19661 1.15413 1.19008 0.80765 0.95354 1.51188 0.92179 1.41798 1.06084 1.06987 1.66842 1.20184 0.89330 0.84048 0.82916 1.90579 1.70949 1.32629 1.55119 1.22618 0.90585 0.81252 1.06388 1.86606 1.24302 1.31110 1.83812 1.21530 0.79880 0.90757 0.72003 1.90785 1.60446 1.42940 1.47934 1.19073 0.95164 0.88773 1.15487 1.21234 0.92060 0.98624 0.90569 1.21505 1.01877 0.90199 1.09001 1.19401 0.92917 0.83651 0.91940 1.86116 1.23473 1.25039 1.87586 1.22957 0.79684 0.94654 1.07819 1.20475 0.83662 0.90686 0.75250 1.43496 1.05930 1.13653 1.76139 1.90818 1.51359 1.53533 1.50823 1.20523 0.93148 0.97739 1.07689 1.21334 1.00593 0.90892 0.91372 0.90822 0.77050 0.86495 0.86392 0.82589 0.79854 0.84792 0.84810 0.74355 0.75392 0.83920 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.98 13.96 21.66 0.30 -54.68 16 2 C -0.01 -0.41 5.50 84.92 0.47 0.06 16 3 Si 0.96 38.04 27.74 68.60 1.90 39.94 16 4 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.23 -7.69 6.52 99.48 0.65 -7.05 16 7 C -0.33 -19.50 10.16 84.04 0.85 -18.65 16 8 H 0.06 4.16 7.39 -2.91 -0.02 4.14 16 9 N -0.58 -27.26 5.09 -306.99 -1.56 -28.82 16 10 C 0.45 20.99 7.86 87.66 0.69 21.68 16 11 O -0.61 -34.93 16.08 15.74 0.25 -34.67 16 12 C 0.07 2.36 5.95 71.24 0.42 2.79 16 13 O -0.34 -12.31 9.00 -50.24 -0.45 -12.76 16 14 C 0.51 15.56 7.89 70.26 0.55 16.11 16 15 O -0.53 -16.70 16.13 19.84 0.32 -16.38 16 16 C -0.18 -4.51 5.87 -20.09 -0.12 -4.63 16 17 C -0.01 -0.12 9.59 22.51 0.22 0.10 16 18 C -0.21 -2.42 9.01 22.33 0.20 -2.22 16 19 C 0.17 2.83 6.70 22.64 0.15 2.98 16 20 O -0.31 -5.27 9.66 -71.10 -0.69 -5.96 16 21 C 0.03 0.16 5.21 71.24 0.37 0.53 16 22 C 0.51 5.80 8.18 87.66 0.72 6.52 16 23 N -0.83 -0.93 8.87 -173.53 -1.54 -2.47 16 24 O -0.59 -14.46 17.34 16.02 0.28 -14.19 16 25 C -0.17 -3.65 9.97 22.32 0.22 -3.43 16 26 C -0.02 -0.58 9.61 22.51 0.22 -0.36 16 27 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.39 15.25 5.76 -92.71 -0.53 14.71 16 29 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 30 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 31 H 0.16 2.22 7.64 -2.91 -0.02 2.20 16 32 H 0.18 0.31 6.28 -2.91 -0.02 0.29 16 33 H 0.13 -0.12 7.64 -2.39 -0.02 -0.14 16 34 H 0.13 -0.12 7.66 -2.39 -0.02 -0.14 16 35 H 0.42 -3.01 8.83 -92.71 -0.82 -3.83 16 36 H 0.41 0.35 8.93 -92.70 -0.83 -0.48 16 37 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.14 3.74 7.60 -2.91 -0.02 3.72 16 Total: -1.00 -92.44 346.46 2.71 -89.73 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -1.07 Total: 18.79 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 4.97 Total: 21.47 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -2.80 Total: -85.97 kcal Atomic # 8 Polarization: -83.67 SS G_CDS: -0.29 Total: -83.96 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.90 Total: 39.94 kcal Total: -92.44 2.71 -89.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236822.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.725 kcal (2) G-P(sol) polarization free energy of solvation -92.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds