Wall clock time and date at job start Fri Apr 10 2020 18:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86802 * 120.00101 * 2 1 4 4 H 1.48496 * 109.47152 * 270.00350 * 3 2 1 5 5 H 1.48500 * 109.47128 * 30.00455 * 3 2 1 6 6 H 1.48505 * 109.46874 * 150.00228 * 3 2 1 7 7 C 1.38948 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99839 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99802 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00440 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99585 * 180.02562 * 10 9 7 13 13 O 1.45199 * 109.46923 * 180.02562 * 12 10 9 14 14 C 1.34709 * 117.00097 * 179.97438 * 13 12 10 15 15 O 1.21471 * 119.99772 * 359.97438 * 14 13 12 16 16 C 1.47744 * 120.00102 * 180.02562 * 14 13 12 17 17 C 1.39656 * 120.12440 * 359.97115 * 16 14 13 18 18 C 1.37947 * 119.96118 * 180.02562 * 17 16 14 19 19 C 1.38296 * 120.21165 * 359.72196 * 18 17 16 20 20 C 1.38817 * 120.24942 * 0.55764 * 19 18 17 21 21 O 1.35910 * 119.98516 * 179.72160 * 20 19 18 22 22 C 1.42899 * 116.99557 * 359.72179 * 21 20 19 23 23 C 1.50702 * 109.46876 * 179.97438 * 22 21 20 24 24 N 1.34777 * 119.99928 * 179.72354 * 23 22 21 25 25 O 1.21283 * 120.00262 * 0.02562 * 23 22 21 26 26 C 1.38485 * 120.03612 * 359.44408 * 20 19 18 27 27 H 0.96997 * 119.99611 * 359.97438 * 1 2 3 28 28 H 0.96995 * 120.00014 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.47628 * 59.99813 * 12 10 9 30 30 H 1.09004 * 109.47042 * 299.99513 * 12 10 9 31 31 H 1.08003 * 120.01631 * 0.02562 * 17 16 14 32 32 H 1.07996 * 119.89035 * 179.97438 * 18 17 16 33 33 H 1.07994 * 119.87423 * 180.27257 * 19 18 17 34 34 H 1.09004 * 109.47206 * 60.00261 * 22 21 20 35 35 H 1.08994 * 109.47548 * 299.99917 * 22 21 20 36 36 H 0.96999 * 120.00047 * 180.27521 * 24 23 22 37 37 H 0.97000 * 120.00317 * 0.28382 * 24 23 22 38 38 H 1.08000 * 120.11143 * 180.25383 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0030 12 6 1.2436 -4.8629 -0.0022 13 8 2.1871 -5.9666 -0.0027 14 6 1.6722 -7.2114 -0.0027 15 8 0.4680 -7.3705 -0.0018 16 6 2.5722 -8.3831 -0.0026 17 6 3.9571 -8.2032 -0.0031 18 6 4.7943 -9.2996 -0.0036 19 6 4.2667 -10.5779 0.0023 20 6 2.8915 -10.7670 -0.0030 21 8 2.3789 -12.0257 -0.0030 22 6 3.3135 -13.1067 -0.0034 23 6 2.5672 -14.4159 -0.0027 24 7 3.2474 -15.5794 -0.0086 25 8 1.3543 -14.4226 -0.0022 26 6 2.0415 -9.6737 -0.0026 27 1 -0.4849 0.8400 0.0004 28 1 0.3534 -2.3907 -0.0005 29 1 0.6166 -4.9201 -0.8918 30 1 0.6173 -4.9213 0.8881 31 1 4.3724 -7.2062 -0.0031 32 1 5.8651 -9.1591 -0.0044 33 1 4.9272 -11.4324 0.0064 34 1 3.9402 -13.0456 0.8863 35 1 3.9395 -13.0455 -0.8936 36 1 2.7671 -16.4221 -0.0121 37 1 4.2174 -15.5741 -0.0092 38 1 0.9714 -9.8194 -0.0026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731241171.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:30 Heat of formation + Delta-G solvation = -163.338589 kcal Electronic energy + Delta-G solvation = -25052.220845 eV Core-core repulsion = 20860.670080 eV Total energy + Delta-G solvation = -4191.550764 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.92841 -40.26797 -39.42782 -38.16556 -37.37300 -36.05991 -34.31923 -33.99323 -31.67442 -31.37007 -30.89875 -28.62480 -28.33225 -25.03086 -24.05336 -22.73206 -21.74908 -20.65619 -19.57302 -18.98013 -18.21664 -18.06139 -17.30051 -16.99038 -16.87259 -16.28719 -16.28670 -16.14105 -15.76663 -15.28407 -14.76836 -14.55287 -14.29936 -14.09789 -14.05927 -13.92301 -13.36670 -12.94297 -12.91384 -12.28758 -12.14323 -12.05177 -11.61501 -11.52613 -11.39742 -11.12817 -10.51578 -10.49337 -10.43748 -10.40825 -10.33119 -10.28550 -9.59853 -9.38474 -8.59977 -8.51915 -8.07525 -6.49082 -3.91205 0.45951 1.11660 1.99089 2.09528 2.50346 2.68263 3.13976 3.24084 3.29474 3.34500 3.55568 3.74829 4.11088 4.12206 4.32142 4.42999 4.44812 4.50650 4.67389 4.93721 5.03343 5.07635 5.16074 5.23151 5.54884 5.60158 5.71160 5.84415 6.03928 6.09099 6.11971 6.14607 6.27859 6.57629 6.61633 6.94022 7.48571 7.62715 7.82012 7.96265 8.49186 9.07744 9.40149 9.89850 10.68097 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.044490 B = 0.001850 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.205373 B =15129.824104 C =15738.580780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.061 3.939 13 O -0.319 6.319 14 C 0.504 3.496 15 O -0.505 6.505 16 C -0.078 4.078 17 C -0.091 4.091 18 C -0.092 4.092 19 C -0.179 4.179 20 C 0.112 3.888 21 O -0.288 6.288 22 C 0.039 3.961 23 C 0.519 3.481 24 N -0.851 5.851 25 O -0.515 6.515 26 C -0.083 4.083 27 H 0.274 0.726 28 H 0.395 0.605 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.149 0.851 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.409 0.591 37 H 0.403 0.597 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.777 -27.943 -0.006 29.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.189 5.189 10 C 0.224 3.776 11 O -0.461 6.461 12 C -0.017 4.017 13 O -0.233 6.233 14 C 0.348 3.652 15 O -0.395 6.395 16 C -0.079 4.079 17 C -0.109 4.109 18 C -0.110 4.110 19 C -0.198 4.198 20 C 0.067 3.933 21 O -0.201 6.201 22 C -0.040 4.040 23 C 0.302 3.698 24 N -0.418 5.418 25 O -0.388 6.388 26 C -0.102 4.102 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.167 0.833 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.241 0.759 37 H 0.232 0.768 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.080 -27.625 0.001 29.079 hybrid contribution 0.154 0.425 -0.011 0.453 sum 9.234 -27.200 -0.010 28.724 Atomic orbital electron populations 1.69618 1.05996 1.28483 1.49594 1.25316 0.95687 0.99865 0.96885 0.85793 0.79210 0.80425 0.78476 1.20275 1.20826 1.19296 1.19726 0.93482 0.81750 1.48237 0.87596 1.41699 1.09399 1.04066 1.63772 1.19289 0.88317 0.84034 0.85975 1.90552 1.13393 1.86792 1.55328 1.22796 0.90818 0.84314 1.03726 1.86576 1.39995 1.13746 1.82992 1.21075 0.87030 0.83788 0.73267 1.90838 1.15965 1.86942 1.45707 1.18844 0.93148 0.90260 1.05662 1.21624 0.91775 1.00841 0.96692 1.20969 1.00440 0.91198 0.98411 1.21463 0.93473 0.99009 1.05824 1.18660 0.91759 0.83946 0.98954 1.86173 1.33478 1.11294 1.89114 1.22451 0.92108 0.85294 1.04164 1.20060 0.88093 0.85415 0.76244 1.43651 1.11333 1.08108 1.78729 1.90842 1.13696 1.87293 1.46988 1.20416 1.01068 0.88388 1.00306 0.91625 0.77121 0.89336 0.89346 0.83278 0.84540 0.84989 0.88640 0.88618 0.75893 0.76843 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.55 -13.96 5.29 -10.96 -0.06 -14.02 16 10 C 0.44 10.57 7.86 -10.98 -0.09 10.48 16 11 O -0.58 -15.85 16.08 -14.11 -0.23 -16.07 16 12 C 0.06 1.17 5.95 36.01 0.21 1.39 16 13 O -0.32 -6.02 9.00 -47.20 -0.42 -6.44 16 14 C 0.50 8.55 7.90 34.62 0.27 8.82 16 15 O -0.50 -9.39 16.13 -19.24 -0.31 -9.70 16 16 C -0.08 -1.08 5.87 -105.00 -0.62 -1.70 16 17 C -0.09 -1.08 9.61 -39.16 -0.38 -1.46 16 18 C -0.09 -0.80 10.02 -39.67 -0.40 -1.20 16 19 C -0.18 -1.41 9.03 -39.35 -0.36 -1.77 16 20 C 0.11 1.18 6.68 -39.28 -0.26 0.92 16 21 O -0.29 -3.06 9.67 -39.37 -0.38 -3.44 16 22 C 0.04 0.22 5.22 36.01 0.19 0.41 16 23 C 0.52 3.78 8.18 -10.98 -0.09 3.69 16 24 N -0.85 -2.08 8.87 31.22 0.28 -1.80 16 25 O -0.51 -6.74 17.34 -14.35 -0.25 -6.99 16 26 C -0.08 -1.07 9.53 -39.00 -0.37 -1.44 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.40 9.50 7.90 -40.82 -0.32 9.17 16 29 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 30 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.15 1.86 7.61 -52.48 -0.40 1.46 16 32 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.13 0.54 6.28 -52.49 -0.33 0.21 16 34 H 0.10 0.27 7.64 -51.93 -0.40 -0.13 16 35 H 0.10 0.27 7.67 -51.93 -0.40 -0.13 16 36 H 0.41 0.79 8.93 -40.82 -0.36 0.42 16 37 H 0.40 -0.47 8.83 -40.82 -0.36 -0.83 16 38 H 0.15 1.99 7.65 -52.49 -0.40 1.59 16 LS Contribution 349.65 15.07 5.27 5.27 Total: -1.00 -37.59 349.65 -6.27 -43.87 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -3.75 Total: 6.80 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -2.12 Total: 10.23 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.94 Total: -39.17 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -1.59 Total: -42.65 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.59 -6.27 -43.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241171.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.471 kcal (2) G-P(sol) polarization free energy of solvation -37.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds