Wall clock time and date at job start Fri Apr 10 2020 18:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86802 * 120.00101 * 2 1 4 4 H 1.48496 * 109.47152 * 270.00350 * 3 2 1 5 5 H 1.48500 * 109.47128 * 30.00455 * 3 2 1 6 6 H 1.48505 * 109.46874 * 150.00228 * 3 2 1 7 7 C 1.38948 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99839 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99802 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00440 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99585 * 180.02562 * 10 9 7 13 13 O 1.45199 * 109.46923 * 180.02562 * 12 10 9 14 14 C 1.34709 * 117.00097 * 179.97438 * 13 12 10 15 15 O 1.21471 * 119.99772 * 359.97438 * 14 13 12 16 16 C 1.47744 * 120.00102 * 180.02562 * 14 13 12 17 17 C 1.39656 * 120.12440 * 359.97115 * 16 14 13 18 18 C 1.37947 * 119.96118 * 180.02562 * 17 16 14 19 19 C 1.38296 * 120.21165 * 359.72196 * 18 17 16 20 20 C 1.38817 * 120.24942 * 0.55764 * 19 18 17 21 21 O 1.35910 * 119.98516 * 179.72160 * 20 19 18 22 22 C 1.42899 * 116.99557 * 359.72179 * 21 20 19 23 23 C 1.50702 * 109.46876 * 179.97438 * 22 21 20 24 24 N 1.34777 * 119.99928 * 179.72354 * 23 22 21 25 25 O 1.21283 * 120.00262 * 0.02562 * 23 22 21 26 26 C 1.38485 * 120.03612 * 359.44408 * 20 19 18 27 27 H 0.96997 * 119.99611 * 359.97438 * 1 2 3 28 28 H 0.96995 * 120.00014 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.47628 * 59.99813 * 12 10 9 30 30 H 1.09004 * 109.47042 * 299.99513 * 12 10 9 31 31 H 1.08003 * 120.01631 * 0.02562 * 17 16 14 32 32 H 1.07996 * 119.89035 * 179.97438 * 18 17 16 33 33 H 1.07994 * 119.87423 * 180.27257 * 19 18 17 34 34 H 1.09004 * 109.47206 * 60.00261 * 22 21 20 35 35 H 1.08994 * 109.47548 * 299.99917 * 22 21 20 36 36 H 0.96999 * 120.00047 * 180.27521 * 24 23 22 37 37 H 0.97000 * 120.00317 * 0.28382 * 24 23 22 38 38 H 1.08000 * 120.11143 * 180.25383 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0030 12 6 1.2436 -4.8629 -0.0022 13 8 2.1871 -5.9666 -0.0027 14 6 1.6722 -7.2114 -0.0027 15 8 0.4680 -7.3705 -0.0018 16 6 2.5722 -8.3831 -0.0026 17 6 3.9571 -8.2032 -0.0031 18 6 4.7943 -9.2996 -0.0036 19 6 4.2667 -10.5779 0.0023 20 6 2.8915 -10.7670 -0.0030 21 8 2.3789 -12.0257 -0.0030 22 6 3.3135 -13.1067 -0.0034 23 6 2.5672 -14.4159 -0.0027 24 7 3.2474 -15.5794 -0.0086 25 8 1.3543 -14.4226 -0.0022 26 6 2.0415 -9.6737 -0.0026 27 1 -0.4849 0.8400 0.0004 28 1 0.3534 -2.3907 -0.0005 29 1 0.6166 -4.9201 -0.8918 30 1 0.6173 -4.9213 0.8881 31 1 4.3724 -7.2062 -0.0031 32 1 5.8651 -9.1591 -0.0044 33 1 4.9272 -11.4324 0.0064 34 1 3.9402 -13.0456 0.8863 35 1 3.9395 -13.0455 -0.8936 36 1 2.7671 -16.4221 -0.0121 37 1 4.2174 -15.5741 -0.0092 38 1 0.9714 -9.8194 -0.0026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731241171.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:29 Heat of formation + Delta-G solvation = -192.211398 kcal Electronic energy + Delta-G solvation = -25053.472864 eV Core-core repulsion = 20860.670080 eV Total energy + Delta-G solvation = -4192.802783 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.91483 -41.28454 -40.26468 -39.92443 -38.23983 -37.51756 -36.03534 -34.78445 -33.42718 -32.52359 -31.70063 -29.97196 -29.14058 -26.77820 -25.31236 -23.53545 -22.55365 -21.50186 -21.42616 -20.08111 -19.91496 -18.66712 -18.40571 -18.02282 -17.78151 -17.47743 -17.36921 -17.02351 -16.97408 -16.49376 -16.18958 -15.80164 -15.79432 -15.38890 -14.98786 -14.82764 -14.66765 -14.12716 -14.03929 -13.62383 -13.55222 -13.49285 -12.93553 -12.91962 -12.47391 -12.26771 -12.14052 -12.11421 -11.93099 -11.77625 -11.57739 -11.11887 -10.73737 -10.52676 -10.21232 -10.12189 -9.38638 -8.52184 -6.03144 -0.48176 0.30757 1.17641 1.35085 1.37354 1.44056 1.49877 1.57122 1.73955 1.86059 2.29858 2.66745 2.81490 3.02558 3.13226 3.53440 3.66627 3.86952 3.96608 4.00209 4.11586 4.12406 4.14115 4.15636 4.19793 4.28123 4.40861 4.79236 5.05025 5.16209 5.25062 5.32870 5.37155 5.52076 5.83071 5.88428 6.21233 6.42767 6.44222 6.54082 7.02233 7.28061 7.38924 7.91813 8.64812 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.044490 B = 0.001850 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.205373 B =15129.824104 C =15738.580780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.086 0.914 9 N -0.557 5.557 10 C 0.439 3.561 11 O -0.615 6.615 12 C 0.070 3.930 13 O -0.332 6.332 14 C 0.505 3.495 15 O -0.530 6.530 16 C -0.101 4.101 17 C -0.102 4.102 18 C -0.079 4.079 19 C -0.153 4.153 20 C 0.114 3.886 21 O -0.319 6.319 22 C 0.029 3.971 23 C 0.514 3.486 24 N -0.825 5.825 25 O -0.588 6.588 26 C -0.105 4.105 27 H 0.281 0.719 28 H 0.400 0.600 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.136 0.864 32 H 0.175 0.825 33 H 0.185 0.815 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.413 0.587 37 H 0.424 0.576 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.513 -29.539 -0.020 32.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.823 3.177 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.104 0.896 9 N -0.194 5.194 10 C 0.225 3.775 11 O -0.501 6.501 12 C -0.007 4.007 13 O -0.247 6.247 14 C 0.351 3.649 15 O -0.422 6.422 16 C -0.102 4.102 17 C -0.120 4.120 18 C -0.097 4.097 19 C -0.171 4.171 20 C 0.068 3.932 21 O -0.233 6.233 22 C -0.048 4.048 23 C 0.298 3.702 24 N -0.392 5.392 25 O -0.467 6.467 26 C -0.124 4.124 27 H 0.090 0.910 28 H 0.234 0.766 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.154 0.846 32 H 0.192 0.808 33 H 0.202 0.798 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.246 0.754 37 H 0.257 0.743 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.856 -29.273 -0.015 31.582 hybrid contribution -0.616 0.715 -0.007 0.943 sum 11.240 -28.558 -0.022 30.690 Atomic orbital electron populations 1.69682 1.07019 1.29742 1.49101 1.26159 0.96586 1.02665 0.95597 0.84824 0.77885 0.76204 0.78789 1.19439 1.19504 1.19421 1.19752 0.93025 0.83292 1.50706 0.89558 1.41735 1.09567 1.04170 1.63964 1.19980 0.88066 0.85195 0.84251 1.90514 1.15243 1.87632 1.56735 1.22584 0.90236 0.82456 1.05455 1.86575 1.40213 1.14411 1.83498 1.21703 0.87381 0.83674 0.72163 1.90808 1.17109 1.87026 1.47225 1.18703 0.93583 0.89094 1.08841 1.21659 0.91154 1.01695 0.97523 1.21381 1.01801 0.90320 0.96200 1.21968 0.92553 1.00361 1.02184 1.18669 0.92596 0.83474 0.98412 1.86144 1.36026 1.12039 1.89067 1.22906 0.91560 0.82704 1.07666 1.20529 0.87385 0.87061 0.75210 1.43482 1.12484 1.07022 1.76175 1.90820 1.16747 1.88316 1.50836 1.20323 1.00676 0.89175 1.02184 0.90975 0.76595 0.87540 0.87555 0.84568 0.80774 0.79765 0.84864 0.84845 0.75439 0.74316 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 3 Si 1.00 42.11 29.55 68.60 2.03 44.14 16 4 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.34 -19.11 9.68 84.04 0.81 -18.29 16 8 H 0.09 5.12 7.16 -2.91 -0.02 5.10 16 9 N -0.56 -28.94 5.29 -306.99 -1.62 -30.56 16 10 C 0.44 21.76 7.86 87.66 0.69 22.45 16 11 O -0.61 -34.95 16.08 15.75 0.25 -34.70 16 12 C 0.07 2.76 5.95 71.24 0.42 3.19 16 13 O -0.33 -12.99 9.00 -49.80 -0.45 -13.44 16 14 C 0.50 17.91 7.90 70.34 0.56 18.46 16 15 O -0.53 -20.74 16.13 19.93 0.32 -20.41 16 16 C -0.10 -2.88 5.87 -20.11 -0.12 -3.00 16 17 C -0.10 -2.34 9.61 22.54 0.22 -2.12 16 18 C -0.08 -1.09 10.02 22.21 0.22 -0.86 16 19 C -0.15 -1.69 9.03 22.42 0.20 -1.49 16 20 C 0.11 2.19 6.68 22.47 0.15 2.34 16 21 O -0.32 -6.29 9.67 -73.50 -0.71 -7.00 16 22 C 0.03 0.22 5.22 71.24 0.37 0.59 16 23 C 0.51 6.53 8.18 87.66 0.72 7.25 16 24 N -0.82 -1.69 8.87 -173.53 -1.54 -3.23 16 25 O -0.59 -15.66 17.34 16.00 0.28 -15.38 16 26 C -0.10 -2.76 9.53 22.64 0.22 -2.55 16 27 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 28 H 0.40 19.67 7.90 -92.71 -0.73 18.93 16 29 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 30 H 0.11 3.81 8.14 -2.38 -0.02 3.79 16 31 H 0.14 3.45 7.61 -2.91 -0.02 3.42 16 32 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.19 0.10 6.28 -2.91 -0.02 0.08 16 34 H 0.13 -0.01 7.64 -2.38 -0.02 -0.03 16 35 H 0.13 -0.01 7.67 -2.39 -0.02 -0.03 16 36 H 0.41 0.74 8.93 -92.71 -0.83 -0.09 16 37 H 0.42 -2.76 8.83 -92.71 -0.82 -3.58 16 38 H 0.13 3.76 7.65 -2.91 -0.02 3.73 16 Total: -1.00 -87.45 349.65 2.56 -84.89 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -1.21 Total: 18.50 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 4.93 Total: 25.93 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -2.88 Total: -82.54 kcal Atomic # 8 Polarization: -90.62 SS G_CDS: -0.31 Total: -90.93 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -87.45 2.56 -84.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241171.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.321 kcal (2) G-P(sol) polarization free energy of solvation -87.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds