Wall clock time and date at job start Fri Apr 10 2020 18:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34642 * 116.99767 * 2 1 4 4 O 1.21503 * 120.00319 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99837 * 180.02562 * 3 2 1 6 6 C 1.39451 * 119.99973 * 185.51876 * 5 3 2 7 7 C 1.39151 * 119.91737 * 213.30501 * 6 5 3 8 8 C 1.37642 * 120.07644 * 180.23430 * 7 6 5 9 9 C 1.39820 * 119.92194 * 359.51367 * 8 7 6 10 10 C 1.47467 * 120.08432 * 180.27636 * 9 8 7 11 11 O 1.21632 * 119.99893 * 327.43960 * 10 9 8 12 12 N 1.34778 * 120.00574 * 147.43241 * 10 9 8 13 13 C 1.36902 * 119.99505 * 3.30998 * 12 10 9 14 14 H 1.08001 * 119.99786 * 319.17254 * 13 12 10 15 15 C 1.39026 * 119.99688 * 139.16768 * 13 12 10 16 16 N 1.31385 * 119.99668 * 162.29472 * 15 13 12 17 17 Si 1.86799 * 120.00224 * 342.29830 * 15 13 12 18 18 H 1.48500 * 109.46837 * 95.20344 * 17 15 13 19 19 H 1.48499 * 109.46959 * 215.19970 * 17 15 13 20 20 H 1.48492 * 109.47001 * 335.20524 * 17 15 13 21 21 C 1.46497 * 120.00609 * 183.30806 * 12 10 9 22 22 C 1.50699 * 109.47056 * 89.99931 * 21 12 10 23 23 O 1.20819 * 120.00214 * 0.02562 * 22 21 12 24 24 O 1.34228 * 119.99533 * 179.97438 * 22 21 12 25 25 C 1.39819 * 119.83805 * 0.25743 * 9 8 7 26 26 C 1.37648 * 119.92340 * 359.97438 * 25 9 8 27 27 H 1.09002 * 109.47466 * 59.99754 * 1 2 3 28 28 H 1.08996 * 109.47392 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47219 * 300.00249 * 1 2 3 30 30 H 0.97000 * 119.99592 * 5.51194 * 5 3 2 31 31 H 1.07995 * 119.96361 * 0.02562 * 7 6 5 32 32 H 1.07999 * 120.04177 * 179.79849 * 8 7 6 33 33 H 0.96999 * 119.99859 * 180.02562 * 16 15 13 34 34 H 1.08997 * 109.47436 * 210.00733 * 21 12 10 35 35 H 1.09009 * 109.46579 * 330.00313 * 21 12 10 36 36 H 0.96706 * 116.99596 * 180.02562 * 24 22 21 37 37 H 1.08008 * 120.04309 * 180.02562 * 25 9 8 38 38 H 1.07998 * 119.96457 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.0426 2.5072 0.1156 7 6 5.2522 2.7312 -0.5347 8 6 5.8826 3.9492 -0.4184 9 6 5.3011 4.9654 0.3460 10 6 5.9705 6.2737 0.4681 11 8 7.1850 6.3388 0.4580 12 7 5.2365 7.3975 0.5908 13 6 3.8721 7.3185 0.6702 14 1 3.3339 6.6241 0.0420 15 6 3.1794 8.1320 1.5597 16 7 1.8881 8.3212 1.4077 17 14 4.0844 8.9561 2.9707 18 1 4.4729 10.3330 2.5726 19 1 3.1971 9.0165 4.1599 20 1 5.3027 8.1741 3.3012 21 6 5.8986 8.7034 0.6391 22 6 6.0377 9.2481 -0.7591 23 8 5.6256 8.6111 -1.6994 24 8 6.6185 10.4415 -0.9596 25 6 4.0832 4.7381 0.9941 26 6 3.4608 3.5160 0.8773 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.9372 0.4606 -0.0816 31 1 5.6986 1.9474 -1.1286 32 1 6.8231 4.1214 -0.9207 33 1 1.4049 8.8891 2.0281 34 1 5.3028 9.3909 1.2394 35 1 6.8867 8.5933 1.0862 36 1 6.6847 10.7493 -1.8740 37 1 3.6309 5.5209 1.5851 38 1 2.5203 3.3396 1.3779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737641863.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:54 Heat of formation + Delta-G solvation = -168.600544 kcal Electronic energy + Delta-G solvation = -27183.508799 eV Core-core repulsion = 22991.729859 eV Total energy + Delta-G solvation = -4191.778940 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.07201 -41.65913 -40.68916 -39.50742 -37.58937 -37.25490 -36.78375 -36.02064 -34.06369 -32.08819 -31.45044 -29.65159 -28.34455 -27.06969 -24.82214 -23.80650 -23.20131 -22.21922 -21.13242 -20.05452 -19.62598 -19.26452 -18.72830 -18.45974 -17.75427 -17.46944 -17.19174 -17.04990 -16.72247 -16.32914 -15.98116 -15.29999 -15.12580 -15.03225 -14.78160 -14.58139 -14.54783 -14.23872 -14.13336 -13.62031 -13.60285 -13.35923 -13.01717 -12.89251 -12.63650 -12.45287 -12.15196 -11.94449 -11.88431 -11.80235 -11.69036 -11.44719 -11.16968 -10.68753 -10.00966 -9.77849 -9.18515 -8.51959 -6.21815 -0.09422 0.51826 0.99757 1.14336 1.19376 1.33320 1.44175 1.49427 1.70087 2.10979 2.14497 2.54788 2.78994 3.08131 3.15191 3.85433 3.96335 4.00249 4.06376 4.20290 4.33392 4.35756 4.36803 4.44427 4.51195 4.54021 4.71801 5.11363 5.15956 5.18268 5.23984 5.24911 5.52084 5.56314 5.63531 5.96898 6.00357 6.14172 6.22188 6.83221 6.97709 7.13659 7.19488 7.54352 8.59840 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.003935 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.575604 B = 7113.749882 C = 8033.666787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.362 6.362 3 C 0.642 3.358 4 O -0.585 6.585 5 N -0.630 5.630 6 C 0.175 3.825 7 C -0.139 4.139 8 C -0.055 4.055 9 C -0.147 4.147 10 C 0.532 3.468 11 O -0.604 6.604 12 N -0.453 5.453 13 C -0.340 4.340 14 H 0.079 0.921 15 C 0.027 3.973 16 N -0.890 5.890 17 Si 0.916 3.084 18 H -0.245 1.245 19 H -0.276 1.276 20 H -0.251 1.251 21 C 0.096 3.904 22 C 0.472 3.528 23 O -0.536 6.536 24 O -0.506 6.506 25 C -0.052 4.052 26 C -0.149 4.149 27 H 0.060 0.940 28 H 0.145 0.855 29 H 0.060 0.940 30 H 0.436 0.564 31 H 0.175 0.825 32 H 0.140 0.860 33 H 0.283 0.717 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.426 0.574 37 H 0.143 0.857 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.754 -12.172 -0.555 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.275 6.275 3 C 0.396 3.604 4 O -0.474 6.474 5 N -0.283 5.283 6 C 0.080 3.920 7 C -0.159 4.159 8 C -0.074 4.074 9 C -0.150 4.150 10 C 0.325 3.675 11 O -0.490 6.490 12 N -0.173 5.173 13 C -0.467 4.467 14 H 0.097 0.903 15 C -0.178 4.178 16 N -0.525 5.525 17 Si 0.739 3.261 18 H -0.171 1.171 19 H -0.202 1.202 20 H -0.175 1.175 21 C -0.028 4.028 22 C 0.313 3.687 23 O -0.425 6.425 24 O -0.320 6.320 25 C -0.071 4.071 26 C -0.170 4.170 27 H 0.079 0.921 28 H 0.163 0.837 29 H 0.078 0.922 30 H 0.277 0.723 31 H 0.193 0.807 32 H 0.158 0.842 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.150 0.850 36 H 0.287 0.713 37 H 0.161 0.839 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.552 -11.950 -0.351 12.225 hybrid contribution -0.302 0.790 -0.178 0.864 sum 2.249 -11.161 -0.529 11.397 Atomic orbital electron populations 1.23591 0.72332 1.06027 1.02680 1.86247 1.26016 1.28794 1.86432 1.18333 0.83513 0.82668 0.75861 1.91100 1.65244 1.36137 1.54958 1.41641 1.03101 1.09273 1.74286 1.17637 0.93404 0.84901 0.96025 1.20912 0.95292 0.98249 1.01427 1.21112 0.99217 0.91428 0.95690 1.19832 0.97162 0.94093 1.03937 1.18639 0.85975 0.85024 0.77886 1.90608 1.14251 1.87864 1.56312 1.43256 1.06709 1.02425 1.64953 1.18892 0.79357 1.26333 1.22164 0.90320 1.25975 0.95905 0.96859 0.99080 1.69803 1.09605 1.36286 1.36831 0.86265 0.79956 0.80171 0.79746 1.17089 1.20177 1.17466 1.21468 1.02302 0.87650 0.91394 1.24149 0.72789 0.78823 0.92934 1.90672 1.46534 1.60130 1.45189 1.84481 1.73364 1.35036 1.39094 1.21951 0.92190 0.96329 0.96634 1.21075 1.01244 0.93529 1.01122 0.92119 0.83749 0.92154 0.72300 0.80730 0.84228 0.90656 0.87194 0.84989 0.71268 0.83947 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.76 10.56 113.37 1.20 1.95 16 2 O -0.36 -7.70 10.62 -55.51 -0.59 -8.29 16 3 C 0.64 18.02 8.47 129.79 1.10 19.12 16 4 O -0.59 -21.92 13.79 19.83 0.27 -21.64 16 5 N -0.63 -14.90 5.33 -429.42 -2.29 -17.19 16 6 C 0.17 5.35 6.28 38.37 0.24 5.59 16 7 C -0.14 -3.82 9.94 22.35 0.22 -3.60 16 8 C -0.05 -1.93 9.59 22.51 0.22 -1.72 16 9 C -0.15 -6.40 5.51 -20.08 -0.11 -6.51 16 10 C 0.53 25.85 7.39 86.68 0.64 26.49 16 11 O -0.60 -30.09 16.32 -4.13 -0.07 -30.16 16 12 N -0.45 -22.29 1.62 -643.26 -1.04 -23.33 16 13 C -0.34 -18.10 6.57 84.09 0.55 -17.55 16 14 H 0.08 4.71 6.44 -2.91 -0.02 4.69 16 15 C 0.03 1.40 5.32 84.95 0.45 1.85 16 16 N -0.89 -49.18 13.96 21.68 0.30 -48.88 16 17 Si 0.92 38.64 24.88 68.60 1.71 40.34 16 18 H -0.25 -9.42 6.74 99.48 0.67 -8.75 16 19 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 21 C 0.10 4.14 4.78 85.63 0.41 4.55 16 22 C 0.47 19.61 8.40 71.24 0.60 20.21 16 23 O -0.54 -26.33 17.19 21.98 0.38 -25.95 16 24 O -0.51 -15.47 13.42 -51.40 -0.69 -16.16 16 25 C -0.05 -2.27 7.74 22.51 0.17 -2.10 16 26 C -0.15 -5.75 8.62 22.35 0.19 -5.56 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.44 6.38 8.92 -92.71 -0.83 5.56 16 31 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 32 H 0.14 4.61 7.96 -2.91 -0.02 4.58 16 33 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 34 H 0.11 4.56 3.35 -2.39 -0.01 4.55 16 35 H 0.13 5.16 7.38 -2.38 -0.02 5.15 16 36 H 0.43 8.65 9.10 -74.05 -0.67 7.98 16 37 H 0.14 6.94 5.43 -2.91 -0.02 6.93 16 38 H 0.12 4.96 6.38 -2.91 -0.02 4.94 16 Total: -1.00 -77.00 332.99 3.50 -73.50 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -0.37 Total: 35.02 kcal Atomic # 6 Polarization: 36.85 SS G_CDS: 5.89 Total: 42.73 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -3.03 Total: -89.39 kcal Atomic # 8 Polarization: -101.50 SS G_CDS: -0.70 Total: -102.20 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.71 Total: 40.34 kcal Total: -77.00 3.50 -73.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737641863.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.098 kcal (2) G-P(sol) polarization free energy of solvation -77.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds