Wall clock time and date at job start Fri Apr 10 2020 18:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34642 * 117.00089 * 2 1 4 4 O 1.21517 * 119.99979 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99863 * 180.02562 * 3 2 1 6 6 C 1.39986 * 119.99624 * 184.39719 * 5 3 2 7 7 C 1.39004 * 119.99679 * 213.76230 * 6 5 3 8 8 C 1.38227 * 120.23654 * 180.02562 * 7 6 5 9 9 C 1.37998 * 120.22943 * 359.72395 * 8 7 6 10 10 C 1.39648 * 119.98467 * 0.55421 * 9 8 7 11 11 C 1.47743 * 120.11295 * 179.71991 * 10 9 8 12 12 O 1.21595 * 119.99904 * 204.88523 * 11 10 9 13 13 N 1.34775 * 120.00066 * 24.88893 * 11 10 9 14 14 C 1.36865 * 120.00301 * 3.00230 * 13 11 10 15 15 H 1.08005 * 119.99817 * 49.51667 * 14 13 11 16 16 C 1.39051 * 120.00103 * 229.51789 * 14 13 11 17 17 N 1.31359 * 119.99926 * 355.83109 * 16 14 13 18 18 Si 1.86802 * 119.99852 * 175.82900 * 16 14 13 19 19 H 1.48501 * 109.47371 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47114 * 120.00078 * 18 16 14 21 21 H 1.48499 * 109.47060 * 240.00062 * 18 16 14 22 22 C 1.46507 * 119.99673 * 183.00050 * 13 11 10 23 23 C 1.50703 * 109.47139 * 265.41895 * 22 13 11 24 24 O 1.20829 * 120.00017 * 0.02562 * 23 22 13 25 25 O 1.34222 * 120.00127 * 180.02562 * 23 22 13 26 26 C 1.38564 * 119.99495 * 33.79308 * 6 5 3 27 27 H 1.09000 * 109.47259 * 59.99855 * 1 2 3 28 28 H 1.09001 * 109.47202 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46754 * 300.00041 * 1 2 3 30 30 H 0.96987 * 119.99965 * 4.40167 * 5 3 2 31 31 H 1.08000 * 119.87600 * 0.02562 * 7 6 5 32 32 H 1.08002 * 119.88267 * 180.02562 * 8 7 6 33 33 H 1.08005 * 120.00663 * 180.27685 * 9 8 7 34 34 H 0.96999 * 120.00170 * 180.02562 * 17 16 14 35 35 H 1.08998 * 109.46787 * 145.42042 * 22 13 11 36 36 H 1.08995 * 109.46857 * 25.41995 * 22 13 11 37 37 H 0.96702 * 117.00551 * 180.02562 * 25 23 22 38 38 H 1.07999 * 120.11685 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4015 2.2188 -0.0005 5 7 3.4093 1.2701 -0.0005 6 6 4.0450 2.5139 0.0924 7 6 5.2493 2.7298 -0.5673 8 6 5.8816 3.9558 -0.4785 9 6 5.3187 4.9758 0.2612 10 6 4.1121 4.7674 0.9325 11 6 3.5101 5.8555 1.7303 12 8 2.7566 5.5917 2.6474 13 7 3.7961 7.1405 1.4414 14 6 4.5949 7.4399 0.3712 15 1 4.3921 6.9997 -0.5940 16 6 5.6677 8.3108 0.5265 17 7 5.8660 8.9097 1.6787 18 14 6.8269 8.6291 -0.9034 19 1 6.3881 7.8391 -2.0818 20 1 6.8091 10.0747 -1.2428 21 1 8.2048 8.2270 -0.5225 22 6 3.2517 8.2168 2.2730 23 6 1.9746 8.7294 1.6586 24 8 1.5613 8.2450 0.6317 25 8 1.2963 9.7240 2.2520 26 6 3.4740 3.5293 0.8426 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.9373 0.4592 -0.0654 31 1 5.6925 1.9368 -1.1513 32 1 6.8169 4.1174 -0.9937 33 1 5.8136 5.9337 0.3245 34 1 6.6142 9.5175 1.7869 35 1 3.9760 9.0289 2.3361 36 1 3.0461 7.8348 3.2728 37 1 0.4825 10.0189 1.8208 38 1 2.5384 3.3635 1.3559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737644548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:56 Heat of formation + Delta-G solvation = -152.818303 kcal Electronic energy + Delta-G solvation = -27389.471680 eV Core-core repulsion = 23198.377110 eV Total energy + Delta-G solvation = -4191.094571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77096 -39.70590 -38.99395 -37.85699 -36.35504 -35.39446 -34.89602 -34.58760 -31.73281 -30.67394 -29.66004 -27.89609 -27.21505 -25.20767 -23.19660 -22.76595 -21.00399 -20.85730 -19.57960 -18.79348 -18.02328 -17.30320 -16.93872 -16.57586 -16.21098 -15.78652 -15.53682 -15.16024 -14.85884 -14.74433 -14.24696 -14.16874 -14.05224 -13.58718 -13.16225 -13.11295 -12.85604 -12.41753 -12.18422 -12.02883 -11.62856 -11.59714 -11.39029 -11.12289 -11.06162 -10.87326 -10.82949 -10.57333 -10.44498 -10.40468 -10.01714 -9.71046 -9.21938 -8.75844 -8.37893 -7.79220 -7.66234 -6.54358 -4.38081 1.51120 1.80135 2.14281 2.85308 3.01577 3.12103 3.16459 3.17503 3.54248 3.83073 4.08008 4.16131 4.50558 4.68694 4.93633 5.03154 5.12211 5.31584 5.35410 5.38296 5.81437 5.83893 5.94082 6.06335 6.15277 6.23345 6.33353 6.49608 6.59115 6.76783 6.85424 7.02226 7.22864 7.24806 7.32192 7.37492 7.50686 7.72041 8.19904 8.29787 8.77011 8.83766 9.22090 9.67527 10.44824 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.013065 B = 0.004558 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.671923 B = 6142.048820 C = 7720.086812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.373 6.373 3 C 0.641 3.359 4 O -0.544 6.544 5 N -0.646 5.646 6 C 0.124 3.876 7 C -0.128 4.128 8 C -0.127 4.127 9 C -0.080 4.080 10 C -0.081 4.081 11 C 0.533 3.467 12 O -0.589 6.589 13 N -0.422 5.422 14 C -0.326 4.326 15 H 0.095 0.905 16 C 0.043 3.957 17 N -0.868 5.868 18 Si 0.914 3.086 19 H -0.261 1.261 20 H -0.277 1.277 21 H -0.273 1.273 22 C 0.111 3.889 23 C 0.460 3.540 24 O -0.514 6.514 25 O -0.528 6.528 26 C -0.072 4.072 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.413 0.587 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.175 0.825 34 H 0.276 0.724 35 H 0.159 0.841 36 H 0.099 0.901 37 H 0.393 0.607 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 -10.773 -3.242 11.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.287 6.287 3 C 0.394 3.606 4 O -0.430 6.430 5 N -0.298 5.298 6 C 0.033 3.967 7 C -0.149 4.149 8 C -0.146 4.146 9 C -0.098 4.098 10 C -0.084 4.084 11 C 0.323 3.677 12 O -0.474 6.474 13 N -0.141 5.141 14 C -0.454 4.454 15 H 0.113 0.887 16 C -0.163 4.163 17 N -0.504 5.504 18 Si 0.739 3.261 19 H -0.185 1.185 20 H -0.202 1.202 21 H -0.198 1.198 22 C -0.014 4.014 23 C 0.302 3.698 24 O -0.401 6.401 25 O -0.339 6.339 26 C -0.093 4.093 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.249 0.751 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.192 0.808 34 H 0.087 0.913 35 H 0.175 0.825 36 H 0.117 0.883 37 H 0.250 0.750 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.126 -10.573 -2.776 10.989 hybrid contribution -0.043 0.124 -1.157 1.165 sum -1.169 -10.448 -3.933 11.225 Atomic orbital electron populations 1.23222 0.74128 1.03373 1.03121 1.86205 1.24420 1.30929 1.87183 1.18157 0.83324 0.82393 0.76737 1.91111 1.64219 1.34406 1.53296 1.41834 1.03142 1.09003 1.75822 1.17193 0.94429 0.84750 1.00368 1.20847 0.95623 0.98374 1.00060 1.20989 1.00224 0.92327 1.01052 1.22809 0.94334 1.00676 0.91981 1.19758 0.95981 0.93438 0.99261 1.18335 0.82122 0.83302 0.83911 1.90636 1.39707 1.83990 1.33077 1.42808 1.42483 1.01809 1.26982 1.19548 1.06073 1.29778 0.90019 0.88730 1.25662 0.97250 0.96004 0.97391 1.69463 1.29793 1.27463 1.23696 0.86031 0.79961 0.78998 0.81090 1.18459 1.20238 1.19836 1.21347 0.89872 0.95683 0.94455 1.25083 0.85971 0.75729 0.83035 1.90636 1.67986 1.57048 1.24469 1.84611 1.40034 1.52342 1.56924 1.21179 1.00273 0.91668 0.96195 0.91703 0.87955 0.91580 0.75073 0.86135 0.85596 0.80819 0.91258 0.82475 0.88292 0.75007 0.84423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 10.56 101.05 1.07 1.61 16 2 O -0.37 -4.72 10.62 -40.33 -0.43 -5.15 16 3 C 0.64 10.17 8.49 54.06 0.46 10.63 16 4 O -0.54 -10.95 13.81 -19.29 -0.27 -11.21 16 5 N -0.65 -9.02 5.35 -14.30 -0.08 -9.10 16 6 C 0.12 2.11 6.27 -83.73 -0.53 1.58 16 7 C -0.13 -1.88 9.96 -39.30 -0.39 -2.27 16 8 C -0.13 -2.04 10.02 -39.67 -0.40 -2.44 16 9 C -0.08 -1.59 8.06 -39.14 -0.32 -1.91 16 10 C -0.08 -1.83 5.64 -104.99 -0.59 -2.43 16 11 C 0.53 13.81 7.47 -12.38 -0.09 13.72 16 12 O -0.59 -16.39 16.15 5.28 0.09 -16.30 16 13 N -0.42 -10.74 2.01 -117.20 -0.24 -10.97 16 14 C -0.33 -8.02 5.67 -15.00 -0.09 -8.11 16 15 H 0.10 2.37 6.96 -52.48 -0.37 2.00 16 16 C 0.04 1.00 4.92 -17.45 -0.09 0.91 16 17 N -0.87 -20.86 10.95 55.50 0.61 -20.25 16 18 Si 0.91 18.05 29.21 -169.99 -4.96 13.09 16 19 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 20 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 22 C 0.11 2.66 5.68 -5.19 -0.03 2.63 16 23 C 0.46 10.59 8.37 36.01 0.30 10.89 16 24 O -0.51 -13.39 17.11 -18.75 -0.32 -13.71 16 25 O -0.53 -9.68 13.42 -39.24 -0.53 -10.20 16 26 C -0.07 -1.52 8.20 -38.97 -0.32 -1.84 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.41 4.08 8.93 -40.82 -0.36 3.71 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.18 3.68 4.31 -52.48 -0.23 3.46 16 34 H 0.28 6.23 8.31 -40.82 -0.34 5.89 16 35 H 0.16 3.79 5.42 -51.93 -0.28 3.51 16 36 H 0.10 2.32 7.33 -51.93 -0.38 1.94 16 37 H 0.39 5.26 9.10 45.56 0.41 5.67 16 38 H 0.14 3.20 6.21 -52.49 -0.33 2.88 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -33.76 336.36 -4.84 -38.60 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -2.78 Total: 17.17 kcal Atomic # 6 Polarization: 23.98 SS G_CDS: -1.01 Total: 22.98 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.30 Total: -40.32 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: -1.46 Total: -56.58 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -4.96 Total: 13.09 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.76 -4.84 -38.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737644548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.216 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds