Wall clock time and date at job start Fri Apr 10 2020 18:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34642 * 117.00089 * 2 1 4 4 O 1.21517 * 119.99979 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99863 * 180.02562 * 3 2 1 6 6 C 1.39986 * 119.99624 * 184.39719 * 5 3 2 7 7 C 1.39004 * 119.99679 * 213.76230 * 6 5 3 8 8 C 1.38227 * 120.23654 * 180.02562 * 7 6 5 9 9 C 1.37998 * 120.22943 * 359.72395 * 8 7 6 10 10 C 1.39648 * 119.98467 * 0.55421 * 9 8 7 11 11 C 1.47743 * 120.11295 * 179.71991 * 10 9 8 12 12 O 1.21595 * 119.99904 * 204.88523 * 11 10 9 13 13 N 1.34775 * 120.00066 * 24.88893 * 11 10 9 14 14 C 1.36865 * 120.00301 * 3.00230 * 13 11 10 15 15 H 1.08005 * 119.99817 * 49.51667 * 14 13 11 16 16 C 1.39051 * 120.00103 * 229.51789 * 14 13 11 17 17 N 1.31359 * 119.99926 * 355.83109 * 16 14 13 18 18 Si 1.86802 * 119.99852 * 175.82900 * 16 14 13 19 19 H 1.48501 * 109.47371 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47114 * 120.00078 * 18 16 14 21 21 H 1.48499 * 109.47060 * 240.00062 * 18 16 14 22 22 C 1.46507 * 119.99673 * 183.00050 * 13 11 10 23 23 C 1.50703 * 109.47139 * 265.41895 * 22 13 11 24 24 O 1.20829 * 120.00017 * 0.02562 * 23 22 13 25 25 O 1.34222 * 120.00127 * 180.02562 * 23 22 13 26 26 C 1.38564 * 119.99495 * 33.79308 * 6 5 3 27 27 H 1.09000 * 109.47259 * 59.99855 * 1 2 3 28 28 H 1.09001 * 109.47202 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46754 * 300.00041 * 1 2 3 30 30 H 0.96987 * 119.99965 * 4.40167 * 5 3 2 31 31 H 1.08000 * 119.87600 * 0.02562 * 7 6 5 32 32 H 1.08002 * 119.88267 * 180.02562 * 8 7 6 33 33 H 1.08005 * 120.00663 * 180.27685 * 9 8 7 34 34 H 0.96999 * 120.00170 * 180.02562 * 17 16 14 35 35 H 1.08998 * 109.46787 * 145.42042 * 22 13 11 36 36 H 1.08995 * 109.46857 * 25.41995 * 22 13 11 37 37 H 0.96702 * 117.00551 * 180.02562 * 25 23 22 38 38 H 1.07999 * 120.11685 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4015 2.2188 -0.0005 5 7 3.4093 1.2701 -0.0005 6 6 4.0450 2.5139 0.0924 7 6 5.2493 2.7298 -0.5673 8 6 5.8816 3.9558 -0.4785 9 6 5.3187 4.9758 0.2612 10 6 4.1121 4.7674 0.9325 11 6 3.5101 5.8555 1.7303 12 8 2.7566 5.5917 2.6474 13 7 3.7961 7.1405 1.4414 14 6 4.5949 7.4399 0.3712 15 1 4.3921 6.9997 -0.5940 16 6 5.6677 8.3108 0.5265 17 7 5.8660 8.9097 1.6787 18 14 6.8269 8.6291 -0.9034 19 1 6.3881 7.8391 -2.0818 20 1 6.8091 10.0747 -1.2428 21 1 8.2048 8.2270 -0.5225 22 6 3.2517 8.2168 2.2730 23 6 1.9746 8.7294 1.6586 24 8 1.5613 8.2450 0.6317 25 8 1.2963 9.7240 2.2520 26 6 3.4740 3.5293 0.8426 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.9373 0.4592 -0.0654 31 1 5.6925 1.9368 -1.1513 32 1 6.8169 4.1174 -0.9937 33 1 5.8136 5.9337 0.3245 34 1 6.6142 9.5175 1.7869 35 1 3.9760 9.0289 2.3361 36 1 3.0461 7.8348 3.2728 37 1 0.4825 10.0189 1.8208 38 1 2.5384 3.3635 1.3559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737644548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:56 Heat of formation + Delta-G solvation = -178.629414 kcal Electronic energy + Delta-G solvation = -27390.590934 eV Core-core repulsion = 23198.377110 eV Total energy + Delta-G solvation = -4192.213824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.04138 -41.48718 -40.61656 -39.39965 -37.60562 -37.21003 -36.73260 -35.97487 -33.60643 -32.17132 -31.06625 -29.51391 -28.28409 -27.06500 -24.74935 -24.10041 -22.70733 -22.16262 -21.35254 -20.13309 -19.51229 -19.11498 -18.50074 -17.77516 -17.72104 -17.34741 -17.13350 -16.76668 -16.58865 -16.45031 -15.85037 -15.72698 -15.22313 -15.00809 -14.68125 -14.61739 -14.32915 -14.08764 -13.56226 -13.38622 -13.19802 -13.18538 -13.05910 -12.75196 -12.58682 -12.44012 -12.35087 -11.97847 -11.91295 -11.78524 -11.62469 -11.41092 -11.06752 -10.60349 -9.86903 -9.57816 -9.14219 -8.34792 -6.25410 0.05827 0.37863 1.02099 1.29103 1.46613 1.51343 1.58118 1.65137 1.81736 2.17968 2.43178 2.79694 2.91926 3.17687 3.18686 3.99709 4.04428 4.28839 4.30333 4.30798 4.43060 4.46817 4.54133 4.55852 4.60986 4.67860 4.92461 5.01092 5.13920 5.28256 5.36207 5.45844 5.59179 5.61910 5.74650 5.83520 6.09197 6.22927 6.34423 6.98438 7.05910 7.14920 7.31262 7.78826 8.66407 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.013065 B = 0.004558 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.671923 B = 6142.048820 C = 7720.086812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.361 6.361 3 C 0.639 3.361 4 O -0.594 6.594 5 N -0.628 5.628 6 C 0.129 3.871 7 C -0.099 4.099 8 C -0.114 4.114 9 C -0.092 4.092 10 C -0.116 4.116 11 C 0.511 3.489 12 O -0.630 6.630 13 N -0.428 5.428 14 C -0.342 4.342 15 H 0.086 0.914 16 C 0.013 3.987 17 N -0.891 5.891 18 Si 0.979 3.021 19 H -0.254 1.254 20 H -0.280 1.280 21 H -0.258 1.258 22 C 0.106 3.894 23 C 0.468 3.532 24 O -0.550 6.550 25 O -0.510 6.510 26 C -0.096 4.096 27 H 0.061 0.939 28 H 0.147 0.853 29 H 0.054 0.946 30 H 0.437 0.563 31 H 0.178 0.822 32 H 0.170 0.830 33 H 0.161 0.839 34 H 0.283 0.717 35 H 0.157 0.843 36 H 0.094 0.906 37 H 0.419 0.581 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.521 -12.507 -5.539 13.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.274 6.274 3 C 0.393 3.607 4 O -0.484 6.484 5 N -0.282 5.282 6 C 0.037 3.963 7 C -0.119 4.119 8 C -0.132 4.132 9 C -0.110 4.110 10 C -0.119 4.119 11 C 0.304 3.696 12 O -0.519 6.519 13 N -0.145 5.145 14 C -0.469 4.469 15 H 0.103 0.897 16 C -0.190 4.190 17 N -0.527 5.527 18 Si 0.800 3.200 19 H -0.177 1.177 20 H -0.206 1.206 21 H -0.182 1.182 22 C -0.019 4.019 23 C 0.311 3.689 24 O -0.440 6.440 25 O -0.323 6.323 26 C -0.117 4.117 27 H 0.080 0.920 28 H 0.165 0.835 29 H 0.073 0.927 30 H 0.277 0.723 31 H 0.196 0.804 32 H 0.187 0.813 33 H 0.178 0.822 34 H 0.093 0.907 35 H 0.174 0.826 36 H 0.112 0.888 37 H 0.280 0.720 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.076 -12.327 -5.063 13.370 hybrid contribution -0.813 0.648 -0.393 1.111 sum 0.263 -11.679 -5.455 12.893 Atomic orbital electron populations 1.23579 0.72498 1.06055 1.02466 1.86237 1.25908 1.28748 1.86542 1.18413 0.83774 0.82571 0.75957 1.91100 1.65445 1.36375 1.55433 1.41652 1.02729 1.09023 1.74835 1.17278 0.95052 0.84712 0.99302 1.21375 0.93501 0.99124 0.97945 1.21436 1.01179 0.91413 0.99140 1.22672 0.93573 1.01676 0.93103 1.19652 0.97859 0.93100 1.01335 1.19099 0.82059 0.84403 0.84086 1.90565 1.41705 1.84674 1.34939 1.43012 1.42516 1.01948 1.27030 1.19568 1.07091 1.30811 0.89433 0.89694 1.26386 0.97877 0.94934 0.99832 1.69529 1.30309 1.27555 1.25330 0.85081 0.78290 0.78473 0.78126 1.17704 1.20587 1.18240 1.21347 0.90588 0.95568 0.94398 1.24770 0.85824 0.76014 0.82302 1.90620 1.68923 1.58468 1.25996 1.84522 1.41102 1.50430 1.56196 1.20987 0.99701 0.92897 0.98126 0.92049 0.83480 0.92704 0.72274 0.80436 0.81273 0.82241 0.90675 0.82625 0.88827 0.71983 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.88 10.56 113.37 1.20 2.08 16 2 O -0.36 -8.61 10.62 -55.51 -0.59 -9.20 16 3 C 0.64 20.01 8.49 129.79 1.10 21.12 16 4 O -0.59 -24.86 13.81 19.79 0.27 -24.59 16 5 N -0.63 -16.27 5.35 -429.55 -2.30 -18.56 16 6 C 0.13 4.18 6.27 38.10 0.24 4.42 16 7 C -0.10 -2.47 9.96 22.45 0.22 -2.24 16 8 C -0.11 -3.22 10.02 22.21 0.22 -3.00 16 9 C -0.09 -3.64 8.06 22.55 0.18 -3.46 16 10 C -0.12 -5.51 5.64 -20.10 -0.11 -5.63 16 11 C 0.51 28.36 7.47 86.76 0.65 29.01 16 12 O -0.63 -38.00 16.15 -4.02 -0.06 -38.07 16 13 N -0.43 -22.91 2.01 -642.97 -1.29 -24.20 16 14 C -0.34 -17.29 5.67 84.10 0.48 -16.82 16 15 H 0.09 4.39 6.96 -2.91 -0.02 4.37 16 16 C 0.01 0.63 4.92 84.96 0.42 1.05 16 17 N -0.89 -43.26 10.95 21.68 0.24 -43.02 16 18 Si 0.98 36.05 29.21 68.60 2.00 38.05 16 19 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 20 H -0.28 -10.44 7.11 99.48 0.71 -9.74 16 21 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 22 C 0.11 5.32 5.68 85.63 0.49 5.81 16 23 C 0.47 22.26 8.37 71.24 0.60 22.86 16 24 O -0.55 -29.73 17.11 21.95 0.38 -29.35 16 25 O -0.51 -18.61 13.42 -51.34 -0.69 -19.30 16 26 C -0.10 -4.21 8.20 22.67 0.19 -4.02 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.44 6.99 8.93 -92.72 -0.83 6.16 16 31 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 32 H 0.17 3.39 8.06 -2.91 -0.02 3.36 16 33 H 0.16 6.78 4.31 -2.91 -0.01 6.77 16 34 H 0.28 12.69 8.31 -92.71 -0.77 11.92 16 35 H 0.16 7.83 5.42 -2.39 -0.01 7.81 16 36 H 0.09 4.70 7.33 -2.39 -0.02 4.69 16 37 H 0.42 10.78 9.10 -74.06 -0.67 10.11 16 38 H 0.10 5.16 6.21 -2.91 -0.02 5.15 16 Total: -1.00 -80.27 336.36 3.48 -76.78 By element: Atomic # 1 Polarization: 40.62 SS G_CDS: -0.34 Total: 40.28 kcal Atomic # 6 Polarization: 45.30 SS G_CDS: 5.86 Total: 51.17 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -3.35 Total: -85.78 kcal Atomic # 8 Polarization: -119.80 SS G_CDS: -0.69 Total: -120.50 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.00 Total: 38.05 kcal Total: -80.27 3.48 -76.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737644548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.845 kcal (2) G-P(sol) polarization free energy of solvation -80.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds