Wall clock time and date at job start Fri Apr 10 2020 18:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35956 * 117.00002 * 2 1 4 4 C 1.38747 * 119.98070 * 180.02562 * 3 2 1 5 5 C 1.38060 * 120.02271 * 180.25662 * 4 3 2 6 6 C 1.38918 * 119.97732 * 359.50785 * 5 4 3 7 7 N 1.39875 * 120.01962 * 180.21147 * 6 5 4 8 8 C 1.34776 * 119.99830 * 144.66757 * 7 6 5 9 9 O 1.21485 * 120.00090 * 5.08198 * 8 7 6 10 10 C 1.48722 * 119.99870 * 185.07522 * 8 7 6 11 11 O 1.21514 * 120.00211 * 4.91277 * 10 8 7 12 12 N 1.34774 * 119.99995 * 184.90815 * 10 8 7 13 13 C 1.36125 * 120.00106 * 354.66818 * 12 10 8 14 14 H 1.08003 * 119.99857 * 313.58529 * 13 12 10 15 15 C 1.39581 * 120.00648 * 133.59197 * 13 12 10 16 16 N 1.31024 * 119.99413 * 2.19727 * 15 13 12 17 17 Si 1.86799 * 120.00508 * 182.19720 * 15 13 12 18 18 H 1.48500 * 109.46827 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47159 * 119.99645 * 17 15 13 20 20 H 1.48497 * 109.47235 * 240.00093 * 17 15 13 21 21 C 1.46498 * 120.00002 * 174.66015 * 12 10 8 22 22 C 1.50697 * 109.47042 * 93.99051 * 21 12 10 23 23 O 1.20827 * 120.00165 * 359.97438 * 22 21 12 24 24 O 1.34232 * 120.00463 * 180.02562 * 22 21 12 25 25 C 1.38915 * 119.96037 * 0.50669 * 6 5 4 26 26 C 1.38067 * 119.97783 * 359.73300 * 25 6 5 27 27 H 1.09006 * 109.47073 * 299.99967 * 1 2 3 28 28 H 1.09000 * 109.47641 * 59.99838 * 1 2 3 29 29 H 1.08995 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.98929 * 359.96765 * 4 3 2 31 31 H 1.08002 * 120.01034 * 179.72073 * 5 4 3 32 32 H 0.96996 * 120.00021 * 324.67413 * 7 6 5 33 33 H 0.97001 * 119.99636 * 180.02562 * 16 15 13 34 34 H 1.09001 * 109.47587 * 213.98533 * 21 12 10 35 35 H 1.08994 * 109.47291 * 333.98741 * 21 12 10 36 36 H 0.96693 * 117.00683 * 179.97438 * 24 22 21 37 37 H 1.08000 * 120.01212 * 179.70297 * 25 6 5 38 38 H 1.07996 * 119.98988 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4318 1.2835 -0.0005 5 6 4.0595 2.5132 0.0048 6 6 3.3033 3.6785 0.0004 7 7 3.9384 4.9248 0.0014 8 6 3.3985 5.9567 -0.6771 9 8 2.3152 5.8313 -1.2124 10 6 4.1290 7.2488 -0.7702 11 8 5.2501 7.3473 -0.3121 12 7 3.5474 8.3104 -1.3628 13 6 2.3378 8.1721 -1.9715 14 1 2.1588 7.3381 -2.6340 15 6 1.3286 9.1081 -1.7397 16 7 1.5594 10.1432 -0.9702 17 14 -0.3510 8.8852 -2.5263 18 1 -0.3538 7.6457 -3.3443 19 1 -1.3847 8.7809 -1.4652 20 1 -0.6494 10.0518 -3.3953 21 6 4.2171 9.6133 -1.3517 22 6 5.0211 9.7756 -2.6159 23 8 5.0339 8.8933 -3.4413 24 8 5.7240 10.9000 -2.8247 25 6 1.9161 3.6054 0.0013 26 6 1.2901 2.3747 0.0009 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 4.0195 0.3774 -0.0004 31 1 5.1380 2.5691 0.0090 32 1 4.7673 5.0464 0.4902 33 1 0.8580 10.7935 -0.8088 34 1 3.4705 10.4052 -1.2919 35 1 4.8805 9.6736 -0.4890 36 1 6.2245 10.9580 -3.6500 37 1 1.3274 4.5108 0.0027 38 1 0.2117 2.3176 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738021485.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:59 Heat of formation + Delta-G solvation = -143.415495 kcal Electronic energy + Delta-G solvation = -27011.721527 eV Core-core repulsion = 22821.034693 eV Total energy + Delta-G solvation = -4190.686834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.48965 -39.80919 -39.24962 -37.98174 -36.75635 -35.60663 -35.06117 -33.76446 -31.78480 -30.99387 -29.14713 -28.32734 -27.13695 -25.24764 -23.75510 -22.74931 -21.67946 -20.67050 -19.48554 -18.51427 -18.08760 -17.42781 -17.11648 -16.30200 -16.08998 -15.76400 -15.61899 -15.48528 -14.83342 -14.75980 -14.46618 -14.35891 -14.07757 -13.71110 -13.39471 -13.12379 -12.98227 -12.60175 -12.52946 -12.15251 -11.93682 -11.66399 -11.52551 -11.33606 -11.27183 -11.04334 -10.82814 -10.65849 -10.46651 -10.13375 -9.83269 -9.57876 -9.35987 -8.92119 -8.46115 -7.83072 -7.52827 -6.55914 -4.32142 1.38909 1.50043 2.36786 3.04453 3.09112 3.11351 3.18620 3.27419 3.31677 3.71781 3.90093 4.06082 4.28000 4.67655 4.87923 4.93797 4.95121 5.06179 5.09604 5.32652 5.41460 5.49101 5.60106 5.71366 6.02879 6.08926 6.12002 6.19754 6.50201 6.53296 6.61421 6.76560 7.03295 7.13838 7.40612 7.44870 7.48615 7.69724 8.17841 8.54299 8.67681 8.83522 9.05030 9.47159 10.43193 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.015005 B = 0.003816 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.648885 B = 7335.200122 C = 8730.286884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.100 3.900 4 C -0.133 4.133 5 C -0.110 4.110 6 C 0.124 3.876 7 N -0.662 5.662 8 C 0.512 3.488 9 O -0.475 6.475 10 C 0.458 3.542 11 O -0.591 6.591 12 N -0.378 5.378 13 C -0.308 4.308 14 H 0.112 0.888 15 C 0.044 3.956 16 N -0.873 5.873 17 Si 0.933 3.067 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.280 1.280 21 C 0.102 3.898 22 C 0.465 3.535 23 O -0.515 6.515 24 O -0.526 6.526 25 C -0.083 4.083 26 C -0.187 4.187 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.416 0.584 33 H 0.277 0.723 34 H 0.169 0.831 35 H 0.103 0.897 36 H 0.396 0.604 37 H 0.146 0.854 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 -9.882 2.911 10.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.055 3.945 4 C -0.153 4.153 5 C -0.130 4.130 6 C 0.030 3.970 7 N -0.311 5.311 8 C 0.296 3.704 9 O -0.345 6.345 10 C 0.244 3.756 11 O -0.478 6.478 12 N -0.095 5.095 13 C -0.436 4.436 14 H 0.129 0.871 15 C -0.162 4.162 16 N -0.511 5.511 17 Si 0.759 3.241 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.206 1.206 21 C -0.023 4.023 22 C 0.306 3.694 23 O -0.402 6.402 24 O -0.337 6.337 25 C -0.103 4.103 26 C -0.206 4.206 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.253 0.747 33 H 0.088 0.912 34 H 0.185 0.815 35 H 0.121 0.879 36 H 0.253 0.747 37 H 0.164 0.836 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.650 -10.120 2.899 10.547 hybrid contribution -0.324 0.287 -0.777 0.889 sum -0.974 -9.832 2.122 10.106 Atomic orbital electron populations 1.23011 0.78727 1.03519 1.01468 1.86030 1.21112 1.27113 1.89299 1.18981 0.92318 0.84017 0.99187 1.20109 0.91208 0.97818 1.06132 1.20744 0.99801 0.90354 1.02136 1.17719 0.91890 0.84819 1.02599 1.43264 1.28012 1.08043 1.51744 1.20242 0.86270 0.85057 0.78833 1.90755 1.19513 1.81254 1.43006 1.19614 0.87146 0.85998 0.82816 1.90637 1.19801 1.84582 1.52741 1.42710 1.17293 1.05645 1.43893 1.20013 0.86213 1.12390 1.25029 0.87091 1.25718 1.00319 0.94988 0.95137 1.69230 1.34551 1.11646 1.35646 0.85732 0.80637 0.78825 0.78910 1.18588 1.20292 1.20608 1.21578 0.97433 0.92061 0.91195 1.24785 0.76328 0.78265 0.89988 1.90643 1.61019 1.41969 1.46544 1.84592 1.60510 1.42850 1.45722 1.21239 0.93346 0.98405 0.97325 1.21138 0.99990 0.91773 1.07734 0.92745 0.92653 0.88571 0.85113 0.84956 0.74688 0.91187 0.81504 0.87917 0.74730 0.83596 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.98 10.50 -19.60 -0.21 -4.19 16 3 C 0.10 1.37 6.69 -39.21 -0.26 1.11 16 4 C -0.13 -1.73 9.98 -39.46 -0.39 -2.13 16 5 C -0.11 -1.50 9.96 -39.39 -0.39 -1.89 16 6 C 0.12 2.04 6.29 -83.68 -0.53 1.52 16 7 N -0.66 -11.87 5.32 -10.44 -0.06 -11.92 16 8 C 0.51 11.31 7.61 -11.93 -0.09 11.22 16 9 O -0.47 -11.28 11.07 5.38 0.06 -11.22 16 10 C 0.46 11.14 7.66 -11.93 -0.09 11.04 16 11 O -0.59 -14.44 16.06 5.35 0.09 -14.35 16 12 N -0.38 -9.50 2.01 -116.91 -0.23 -9.74 16 13 C -0.31 -8.01 7.38 -15.15 -0.11 -8.13 16 14 H 0.11 3.04 6.43 -52.48 -0.34 2.70 16 15 C 0.04 1.09 5.39 -17.40 -0.09 1.00 16 16 N -0.87 -21.59 10.80 55.53 0.60 -20.99 16 17 Si 0.93 20.06 29.56 -169.99 -5.02 15.03 16 18 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 C 0.10 2.33 5.65 -5.20 -0.03 2.30 16 22 C 0.46 10.15 8.37 36.00 0.30 10.46 16 23 O -0.51 -12.77 17.12 -18.75 -0.32 -13.09 16 24 O -0.53 -9.02 13.42 -39.26 -0.53 -9.55 16 25 C -0.08 -1.38 8.69 -39.39 -0.34 -1.73 16 26 C -0.19 -2.66 9.03 -39.46 -0.36 -3.02 16 27 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 28 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.42 6.64 8.31 -40.82 -0.34 6.31 16 33 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 34 H 0.17 3.95 5.23 -51.93 -0.27 3.67 16 35 H 0.10 2.24 7.38 -51.93 -0.38 1.85 16 36 H 0.40 4.82 9.10 45.56 0.41 5.23 16 37 H 0.15 2.70 6.24 -52.49 -0.33 2.37 16 38 H 0.13 1.54 6.29 -52.49 -0.33 1.21 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -31.77 336.55 -4.72 -36.49 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -2.77 Total: 15.46 kcal Atomic # 6 Polarization: 24.39 SS G_CDS: -1.40 Total: 23.00 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.31 Total: -42.65 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.91 Total: -52.40 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.77 -4.72 -36.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738021485.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.928 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds