Wall clock time and date at job start Fri Apr 10 2020 18:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35956 * 117.00002 * 2 1 4 4 C 1.38747 * 119.98070 * 180.02562 * 3 2 1 5 5 C 1.38060 * 120.02271 * 180.25662 * 4 3 2 6 6 C 1.38918 * 119.97732 * 359.50785 * 5 4 3 7 7 N 1.39875 * 120.01962 * 180.21147 * 6 5 4 8 8 C 1.34776 * 119.99830 * 144.66757 * 7 6 5 9 9 O 1.21485 * 120.00090 * 5.08198 * 8 7 6 10 10 C 1.48722 * 119.99870 * 185.07522 * 8 7 6 11 11 O 1.21514 * 120.00211 * 4.91277 * 10 8 7 12 12 N 1.34774 * 119.99995 * 184.90815 * 10 8 7 13 13 C 1.36125 * 120.00106 * 354.66818 * 12 10 8 14 14 H 1.08003 * 119.99857 * 313.58529 * 13 12 10 15 15 C 1.39581 * 120.00648 * 133.59197 * 13 12 10 16 16 N 1.31024 * 119.99413 * 2.19727 * 15 13 12 17 17 Si 1.86799 * 120.00508 * 182.19720 * 15 13 12 18 18 H 1.48500 * 109.46827 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47159 * 119.99645 * 17 15 13 20 20 H 1.48497 * 109.47235 * 240.00093 * 17 15 13 21 21 C 1.46498 * 120.00002 * 174.66015 * 12 10 8 22 22 C 1.50697 * 109.47042 * 93.99051 * 21 12 10 23 23 O 1.20827 * 120.00165 * 359.97438 * 22 21 12 24 24 O 1.34232 * 120.00463 * 180.02562 * 22 21 12 25 25 C 1.38915 * 119.96037 * 0.50669 * 6 5 4 26 26 C 1.38067 * 119.97783 * 359.73300 * 25 6 5 27 27 H 1.09006 * 109.47073 * 299.99967 * 1 2 3 28 28 H 1.09000 * 109.47641 * 59.99838 * 1 2 3 29 29 H 1.08995 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.98929 * 359.96765 * 4 3 2 31 31 H 1.08002 * 120.01034 * 179.72073 * 5 4 3 32 32 H 0.96996 * 120.00021 * 324.67413 * 7 6 5 33 33 H 0.97001 * 119.99636 * 180.02562 * 16 15 13 34 34 H 1.09001 * 109.47587 * 213.98533 * 21 12 10 35 35 H 1.08994 * 109.47291 * 333.98741 * 21 12 10 36 36 H 0.96693 * 117.00683 * 179.97438 * 24 22 21 37 37 H 1.08000 * 120.01212 * 179.70297 * 25 6 5 38 38 H 1.07996 * 119.98988 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4318 1.2835 -0.0005 5 6 4.0595 2.5132 0.0048 6 6 3.3033 3.6785 0.0004 7 7 3.9384 4.9248 0.0014 8 6 3.3985 5.9567 -0.6771 9 8 2.3152 5.8313 -1.2124 10 6 4.1290 7.2488 -0.7702 11 8 5.2501 7.3473 -0.3121 12 7 3.5474 8.3104 -1.3628 13 6 2.3378 8.1721 -1.9715 14 1 2.1588 7.3381 -2.6340 15 6 1.3286 9.1081 -1.7397 16 7 1.5594 10.1432 -0.9702 17 14 -0.3510 8.8852 -2.5263 18 1 -0.3538 7.6457 -3.3443 19 1 -1.3847 8.7809 -1.4652 20 1 -0.6494 10.0518 -3.3953 21 6 4.2171 9.6133 -1.3517 22 6 5.0211 9.7756 -2.6159 23 8 5.0339 8.8933 -3.4413 24 8 5.7240 10.9000 -2.8247 25 6 1.9161 3.6054 0.0013 26 6 1.2901 2.3747 0.0009 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 4.0195 0.3774 -0.0004 31 1 5.1380 2.5691 0.0090 32 1 4.7673 5.0464 0.4902 33 1 0.8580 10.7935 -0.8088 34 1 3.4705 10.4052 -1.2919 35 1 4.8805 9.6736 -0.4890 36 1 6.2245 10.9580 -3.6500 37 1 1.3274 4.5108 0.0027 38 1 0.2117 2.3176 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738021485.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:58 Heat of formation + Delta-G solvation = -166.179840 kcal Electronic energy + Delta-G solvation = -27012.708663 eV Core-core repulsion = 22821.034693 eV Total energy + Delta-G solvation = -4191.673970 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.01517 -41.27832 -40.69263 -39.52064 -38.14435 -37.33401 -36.78566 -35.23840 -33.68233 -32.10348 -30.45309 -29.96463 -28.07051 -27.08747 -25.35664 -23.95565 -23.02144 -22.18209 -21.25063 -20.17964 -19.13053 -19.09571 -18.59748 -17.94787 -17.61943 -17.30277 -17.02805 -16.60019 -16.54643 -16.39317 -16.16188 -15.81296 -15.49116 -14.96738 -14.82463 -14.68384 -14.25637 -13.96929 -13.73680 -13.62563 -13.46602 -13.34231 -13.11530 -12.80516 -12.70968 -12.41871 -12.31384 -12.24076 -11.99138 -11.78177 -11.63897 -11.21292 -10.89285 -10.30297 -9.99322 -9.71146 -8.74140 -8.43784 -6.26922 0.14248 0.34542 0.71702 1.30428 1.40555 1.41835 1.50062 1.62142 2.14140 2.28570 2.40146 2.44803 2.78975 3.03495 3.07113 3.77163 3.90205 3.92424 4.23023 4.36503 4.37418 4.41439 4.49178 4.52690 4.53824 4.74224 4.87028 4.92685 5.06202 5.32410 5.36215 5.39517 5.49592 5.60427 5.66015 5.78909 6.15789 6.33774 6.43259 6.85147 6.95287 7.09012 7.21744 7.57233 8.55501 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.015005 B = 0.003816 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.648885 B = 7335.200122 C = 8730.286884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.105 3.895 4 C -0.132 4.132 5 C -0.097 4.097 6 C 0.092 3.908 7 N -0.645 5.645 8 C 0.509 3.491 9 O -0.500 6.500 10 C 0.446 3.554 11 O -0.600 6.600 12 N -0.389 5.389 13 C -0.326 4.326 14 H 0.090 0.910 15 C 0.014 3.986 16 N -0.885 5.885 17 Si 0.987 3.013 18 H -0.274 1.274 19 H -0.271 1.271 20 H -0.267 1.267 21 C 0.098 3.902 22 C 0.473 3.527 23 O -0.549 6.549 24 O -0.507 6.507 25 C -0.101 4.101 26 C -0.191 4.191 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.124 0.876 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.424 0.576 33 H 0.284 0.716 34 H 0.163 0.837 35 H 0.110 0.890 36 H 0.422 0.578 37 H 0.119 0.881 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 -11.210 3.043 11.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.059 3.941 4 C -0.151 4.151 5 C -0.117 4.117 6 C -0.001 4.001 7 N -0.293 5.293 8 C 0.293 3.707 9 O -0.373 6.373 10 C 0.232 3.768 11 O -0.487 6.487 12 N -0.107 5.107 13 C -0.455 4.455 14 H 0.107 0.893 15 C -0.190 4.190 16 N -0.523 5.523 17 Si 0.810 3.190 18 H -0.198 1.198 19 H -0.196 1.196 20 H -0.192 1.192 21 C -0.026 4.026 22 C 0.316 3.684 23 O -0.440 6.440 24 O -0.320 6.320 25 C -0.121 4.121 26 C -0.210 4.210 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.142 0.858 30 H 0.177 0.823 31 H 0.176 0.824 32 H 0.263 0.737 33 H 0.095 0.905 34 H 0.179 0.821 35 H 0.128 0.872 36 H 0.283 0.717 37 H 0.137 0.863 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.697 -11.436 3.050 11.856 hybrid contribution -0.257 0.610 -0.773 1.017 sum -0.954 -10.826 2.277 11.104 Atomic orbital electron populations 1.23327 0.76783 1.05591 1.01990 1.86037 1.23129 1.26162 1.88837 1.19164 0.92837 0.84287 0.97774 1.20477 0.91312 0.98503 1.04798 1.20992 1.00978 0.89399 1.00322 1.17955 0.92148 0.84748 1.05251 1.43033 1.27911 1.07860 1.50494 1.19979 0.86022 0.85286 0.79440 1.90740 1.20336 1.81725 1.44460 1.20094 0.87286 0.86860 0.82518 1.90598 1.19991 1.85006 1.53121 1.42857 1.17455 1.06433 1.43974 1.19822 0.87321 1.12529 1.25829 0.89287 1.26322 1.02628 0.94566 0.95488 1.69274 1.35501 1.11765 1.35759 0.84964 0.77249 0.78517 0.78281 1.19812 1.19570 1.19158 1.21563 0.97564 0.91206 0.92317 1.24422 0.76173 0.78682 0.89087 1.90633 1.62411 1.43440 1.47473 1.84503 1.59856 1.40245 1.47400 1.21125 0.93625 0.98462 0.98921 1.21260 1.01044 0.91141 1.07554 0.91921 0.92432 0.85835 0.82283 0.82365 0.73707 0.90483 0.82089 0.87216 0.71691 0.86272 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.25 10.50 -93.05 -0.98 -8.22 16 3 C 0.11 2.66 6.69 22.51 0.15 2.81 16 4 C -0.13 -3.08 9.98 22.35 0.22 -2.85 16 5 C -0.10 -2.46 9.96 22.39 0.22 -2.24 16 6 C 0.09 3.03 6.29 38.18 0.24 3.27 16 7 N -0.64 -23.44 5.32 -305.25 -1.62 -25.07 16 8 C 0.51 23.31 7.61 87.05 0.66 23.97 16 9 O -0.50 -24.86 11.07 -3.67 -0.04 -24.90 16 10 C 0.45 22.30 7.66 87.05 0.67 22.97 16 11 O -0.60 -29.75 16.06 -3.76 -0.06 -29.81 16 12 N -0.39 -20.14 2.01 -642.08 -1.29 -21.43 16 13 C -0.33 -17.53 7.38 84.35 0.62 -16.91 16 14 H 0.09 5.12 6.43 -2.91 -0.02 5.10 16 15 C 0.01 0.70 5.39 85.14 0.46 1.16 16 16 N -0.89 -43.95 10.80 21.76 0.24 -43.72 16 17 Si 0.99 41.39 29.56 68.60 2.03 43.41 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 21 C 0.10 4.53 5.65 85.63 0.48 5.02 16 22 C 0.47 20.61 8.37 71.23 0.60 21.21 16 23 O -0.55 -27.50 17.12 21.96 0.38 -27.12 16 24 O -0.51 -16.57 13.42 -51.44 -0.69 -17.26 16 25 C -0.10 -3.43 8.69 22.39 0.19 -3.24 16 26 C -0.19 -5.29 9.03 22.35 0.20 -5.09 16 27 H 0.06 0.84 7.66 -2.38 -0.02 0.82 16 28 H 0.06 0.84 7.66 -2.39 -0.02 0.83 16 29 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 31 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.42 13.58 8.31 -92.71 -0.77 12.81 16 33 H 0.28 13.05 8.30 -92.71 -0.77 12.28 16 34 H 0.16 7.70 5.23 -2.39 -0.01 7.69 16 35 H 0.11 4.84 7.38 -2.39 -0.02 4.82 16 36 H 0.42 9.29 9.10 -74.06 -0.67 8.62 16 37 H 0.12 4.67 6.24 -2.91 -0.02 4.66 16 38 H 0.15 3.36 6.29 -2.91 -0.02 3.35 16 Total: -1.00 -69.48 336.55 3.51 -65.97 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: -0.28 Total: 36.69 kcal Atomic # 6 Polarization: 45.62 SS G_CDS: 5.84 Total: 51.45 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -2.68 Total: -90.21 kcal Atomic # 8 Polarization: -105.93 SS G_CDS: -1.39 Total: -107.32 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -69.48 3.51 -65.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738021485.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.210 kcal (2) G-P(sol) polarization free energy of solvation -69.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds