Wall clock time and date at job start Fri Apr 10 2020 18:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99389 * 2 1 4 4 H 1.48497 * 109.46911 * 239.99893 * 3 2 1 5 5 H 1.48501 * 109.47278 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46934 * 120.00128 * 3 2 1 7 7 C 1.37875 * 120.00645 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00430 * 186.12201 * 7 2 1 9 9 C 1.50701 * 119.99625 * 6.38641 * 7 2 1 10 10 C 1.52991 * 115.55544 * 274.89404 * 9 7 2 11 11 O 1.45198 * 109.47075 * 294.88682 * 10 9 7 12 12 C 1.34228 * 117.00205 * 179.97438 * 11 10 9 13 13 O 1.20835 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00368 * 180.02562 * 12 11 10 15 15 N 1.46503 * 109.47110 * 180.02562 * 14 12 11 16 16 C 1.35761 * 119.62400 * 89.99731 * 15 14 12 17 17 C 1.35352 * 120.69915 * 180.02562 * 16 15 14 18 18 N 1.48005 * 120.02600 * 180.02562 * 17 16 15 19 19 O 1.21801 * 120.00075 * 359.97438 * 18 17 16 20 20 O 1.21798 * 120.00063 * 179.97438 * 18 17 16 21 21 C 1.40198 * 119.94686 * 359.97438 * 17 16 15 22 22 C 1.36399 * 119.26747 * 0.02562 * 21 17 16 23 23 C 1.34663 * 119.62110 * 269.72431 * 15 14 12 24 24 O 1.22054 * 119.98666 * 359.97438 * 23 15 14 25 25 C 1.52999 * 117.49233 * 129.22099 * 9 7 2 26 26 C 1.53002 * 117.49529 * 60.56682 * 9 7 2 27 27 H 0.96998 * 120.00543 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47413 * 54.88486 * 10 9 7 29 29 H 1.09000 * 109.47103 * 174.88713 * 10 9 7 30 30 H 1.09004 * 109.46603 * 299.99890 * 14 12 11 31 31 H 1.08998 * 109.47477 * 59.99811 * 14 12 11 32 32 H 1.07992 * 119.65454 * 0.02562 * 16 15 14 33 33 H 1.08002 * 120.36398 * 180.02562 * 21 17 16 34 34 H 1.08003 * 120.34507 * 180.02562 * 22 21 17 35 35 H 1.08998 * 117.50651 * 0.02562 * 25 9 7 36 36 H 1.09007 * 117.49575 * 145.02284 * 25 9 7 37 37 H 1.09004 * 117.50100 * 214.97609 * 26 9 7 38 38 H 1.09000 * 117.49932 * 359.97275 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0800 -1.1966 0.0992 9 6 1.2582 -2.4950 -0.1463 10 6 0.6972 -3.0828 1.1500 11 8 1.7930 -3.4498 2.0290 12 6 1.4687 -3.9839 3.2170 13 8 0.3075 -4.1391 3.5128 14 6 2.5527 -4.3888 4.1824 15 7 1.9449 -4.9409 5.3957 16 6 1.6900 -6.2721 5.4726 17 6 1.1286 -6.8052 6.5828 18 7 0.8577 -8.2587 6.6508 19 8 1.1397 -8.9756 5.7073 20 8 0.3529 -8.7380 7.6503 21 6 0.8048 -5.9797 7.6687 22 6 1.0616 -4.6424 7.5895 23 6 1.6504 -4.1229 6.4241 24 8 1.8906 -2.9290 6.3420 25 6 1.7506 -3.4762 -1.2120 26 6 0.4464 -2.7040 -1.4262 27 1 -0.4851 0.8400 0.0004 28 1 0.0687 -2.3413 1.6431 29 1 0.1035 -3.9677 0.9206 30 1 3.1884 -5.1435 3.7191 31 1 3.1534 -3.5168 4.4410 32 1 1.9379 -6.9126 4.6391 33 1 0.3570 -6.3980 8.5580 34 1 0.8196 -3.9905 8.4159 35 1 2.6146 -3.1810 -1.8073 36 1 1.6745 -4.5406 -0.9896 37 1 -0.4872 -3.2607 -1.3448 38 1 0.4519 -1.9004 -2.1626 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744278908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:15 Heat of formation + Delta-G solvation = -69.282570 kcal Electronic energy + Delta-G solvation = -26624.163812 eV Core-core repulsion = 22436.691622 eV Total energy + Delta-G solvation = -4187.472189 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.57140 -42.78744 -41.35821 -38.77116 -38.58816 -37.67990 -37.17651 -36.16474 -34.06172 -32.22729 -30.85879 -28.55794 -27.52850 -27.24631 -25.37666 -24.22689 -23.03796 -22.36944 -21.25540 -20.67605 -20.04652 -19.18949 -18.78996 -18.62816 -18.50194 -18.30693 -17.58869 -17.52929 -17.12440 -16.65664 -16.32509 -15.76319 -15.62285 -15.04453 -14.86895 -14.36527 -14.05908 -13.83936 -13.70862 -13.58984 -13.45472 -12.97060 -12.84222 -12.72968 -12.47257 -12.38134 -12.29521 -12.26446 -12.10646 -11.80552 -11.76888 -11.61925 -11.43467 -10.82589 -10.52766 -10.12770 -9.82895 -8.18344 -6.29475 -1.17011 -0.59209 0.02717 0.45658 0.89909 0.95646 1.40485 1.40899 1.48194 1.62418 2.12018 2.38925 2.93642 2.99959 3.11237 3.25804 3.27714 3.48452 3.60436 3.76126 4.01872 4.07312 4.27013 4.32209 4.37752 4.43126 4.49318 4.60799 4.76600 4.82620 4.96157 5.16755 5.18903 5.29517 5.36712 5.52967 5.59349 5.71121 6.29813 6.31936 6.47915 6.52742 6.76736 7.40182 8.90058 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.003062 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.436951 B = 9140.664774 C =10108.728868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.059 0.941 9 C 0.003 3.997 10 C 0.131 3.869 11 O -0.334 6.334 12 C 0.438 3.562 13 O -0.545 6.545 14 C 0.100 3.900 15 N -0.472 5.472 16 C 0.258 3.742 17 C -0.156 4.156 18 N 0.054 4.946 19 O -0.178 6.178 20 O -0.172 6.172 21 C 0.019 3.981 22 C -0.218 4.218 23 C 0.510 3.490 24 O -0.552 6.552 25 C -0.171 4.171 26 C -0.151 4.151 27 H 0.260 0.740 28 H 0.035 0.965 29 H 0.056 0.944 30 H 0.206 0.794 31 H 0.157 0.843 32 H 0.227 0.773 33 H 0.188 0.812 34 H 0.189 0.811 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.086 -14.867 12.467 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.178 4.178 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.002 3.998 10 C 0.057 3.943 11 O -0.248 6.248 12 C 0.282 3.718 13 O -0.436 6.436 14 C -0.021 4.021 15 N -0.180 5.180 16 C 0.123 3.877 17 C -0.246 4.246 18 N 0.568 4.432 19 O -0.390 6.390 20 O -0.385 6.385 21 C -0.002 4.002 22 C -0.240 4.240 23 C 0.313 3.687 24 O -0.433 6.433 25 C -0.207 4.207 26 C -0.188 4.188 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.223 0.777 31 H 0.174 0.826 32 H 0.244 0.756 33 H 0.205 0.795 34 H 0.206 0.794 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.876 -13.238 12.386 19.057 hybrid contribution -0.465 0.980 -0.127 1.092 sum 5.411 -12.258 12.259 18.161 Atomic orbital electron populations 1.70087 1.07184 1.27369 1.50153 1.25723 0.95559 1.02206 0.94318 0.85748 0.78528 0.79232 0.79013 1.19050 1.21362 1.19863 1.20655 0.93124 0.89810 1.50751 0.92255 1.18848 1.00702 0.94831 0.85399 1.22573 0.85708 0.96471 0.89520 1.86489 1.41000 1.70907 1.26435 1.24370 0.90435 0.74295 0.82736 1.90686 1.22878 1.53052 1.77018 1.21932 0.92178 1.07250 0.80776 1.45373 1.49667 1.06933 1.16046 1.22153 0.83617 0.84384 0.97513 1.20133 1.21386 0.81802 1.01269 1.43120 0.97650 1.02562 0.99873 1.94563 1.56298 1.58757 1.29366 1.94557 1.44354 1.77299 1.22252 1.21312 0.90127 0.91732 0.97032 1.22192 1.07035 0.95980 0.98793 1.17976 0.79779 0.86451 0.84481 1.91060 1.54606 1.15546 1.82057 1.23036 0.97247 0.96518 1.03949 1.22498 0.94123 1.01512 1.00688 0.93078 0.94649 0.92611 0.77724 0.82554 0.75636 0.79486 0.79393 0.89471 0.88451 0.90442 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.62 12.93 21.45 0.28 -51.35 16 2 C 0.02 1.20 5.39 84.65 0.46 1.66 16 3 Si 0.95 42.77 29.54 68.60 2.03 44.80 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.51 -26.65 8.77 25.60 0.22 -26.42 16 8 H 0.06 3.09 7.82 -2.91 -0.02 3.06 16 9 C 0.00 0.13 1.61 -52.93 -0.08 0.04 16 10 C 0.13 5.84 5.29 71.98 0.38 6.23 16 11 O -0.33 -12.70 10.16 -51.40 -0.52 -13.22 16 12 C 0.44 13.87 8.02 71.24 0.57 14.44 16 13 O -0.55 -20.99 16.18 21.94 0.35 -20.64 16 14 C 0.10 1.81 5.93 85.63 0.51 2.32 16 15 N -0.47 -8.83 2.07 -655.07 -1.36 -10.19 16 16 C 0.26 3.57 9.80 83.42 0.82 4.38 16 17 C -0.16 -2.47 6.82 36.19 0.25 -2.22 16 18 N 0.05 1.05 4.45 -46.92 -0.21 0.84 16 19 O -0.18 -3.70 18.39 18.88 0.35 -3.35 16 20 O -0.17 -3.66 18.50 18.89 0.35 -3.31 16 21 C 0.02 0.26 9.59 22.32 0.21 0.48 16 22 C -0.22 -3.73 9.99 22.40 0.22 -3.50 16 23 C 0.51 12.26 7.40 84.82 0.63 12.89 16 24 O -0.55 -18.24 16.64 -5.49 -0.09 -18.33 16 25 C -0.17 -6.55 9.96 30.62 0.30 -6.25 16 26 C -0.15 -6.60 9.43 30.62 0.29 -6.31 16 27 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.04 1.86 8.13 -2.39 -0.02 1.84 16 29 H 0.06 2.28 8.09 -2.39 -0.02 2.26 16 30 H 0.21 1.16 8.01 -2.39 -0.02 1.14 16 31 H 0.16 2.94 7.38 -2.39 -0.02 2.92 16 32 H 0.23 1.53 7.51 -2.91 -0.02 1.51 16 33 H 0.19 1.65 7.67 -2.91 -0.02 1.63 16 34 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 36 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 37 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 38 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -75.42 351.74 7.06 -68.36 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 1.11 Total: 8.64 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 4.78 Total: -2.26 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -1.29 Total: -60.69 kcal Atomic # 8 Polarization: -59.29 SS G_CDS: 0.44 Total: -58.85 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -75.42 7.06 -68.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.924 kcal (2) G-P(sol) polarization free energy of solvation -75.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds