Wall clock time and date at job start Fri Apr 10 2020 18:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47457 * 299.99915 * 3 2 1 6 6 H 1.48501 * 109.47104 * 59.99987 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.47036 * 179.97438 * 12 10 9 14 14 C 1.34231 * 116.99983 * 179.97438 * 13 12 10 15 15 O 1.20822 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00053 * 180.02562 * 14 13 12 17 17 H 1.08999 * 110.85916 * 56.21211 * 16 14 13 18 18 C 1.54629 * 110.97037 * 292.37944 * 16 14 13 19 19 C 1.51282 * 104.19769 * 217.08488 * 18 16 14 20 20 O 1.21304 * 124.94065 * 196.21552 * 19 18 16 21 21 N 1.34415 * 110.11520 * 16.25189 * 19 18 16 22 22 C 1.40766 * 124.34875 * 180.38747 * 21 19 18 23 23 C 1.40249 * 126.07894 * 180.02562 * 22 21 19 24 24 N 1.30836 * 108.33523 * 180.02562 * 23 22 21 25 25 N 1.40064 * 108.36526 * 0.02562 * 24 23 22 26 26 H 0.97001 * 126.05039 * 180.02562 * 25 24 23 27 27 C 1.35756 * 126.08011 * 359.73795 * 22 21 19 28 28 C 1.46760 * 111.30158 * 0.40702 * 21 19 18 29 29 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 1.09002 * 110.48573 * 335.76355 * 18 16 14 34 34 H 1.09003 * 110.49053 * 98.40126 * 18 16 14 35 35 H 1.08001 * 125.83912 * 0.02562 * 23 22 21 36 36 H 1.08004 * 126.21869 * 0.02562 * 27 22 21 37 37 H 1.08996 * 110.24930 * 223.98454 * 28 21 19 38 38 H 1.09006 * 110.24553 * 101.98427 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 8 2.1875 -5.9665 -0.0016 14 6 1.6745 -7.2069 -0.0016 15 8 0.4767 -7.3653 -0.0017 16 6 2.5926 -8.4020 -0.0016 17 1 3.2782 -8.3647 0.8450 18 6 3.3658 -8.5059 -1.3366 19 6 3.4419 -9.9925 -1.6065 20 8 4.1967 -10.5172 -2.3979 21 7 2.5508 -10.6473 -0.8423 22 6 2.3742 -12.0438 -0.8478 23 6 1.4573 -12.7635 -0.0678 24 7 1.5873 -14.0349 -0.3479 25 7 2.5909 -14.1733 -1.3151 26 1 2.8953 -15.0069 -1.7066 27 6 3.0572 -12.9331 -1.6131 28 6 1.7855 -9.7192 -0.0017 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6170 -4.9209 0.8886 32 1 0.6176 -4.9205 -0.8913 33 1 2.8201 -8.0010 -2.1338 34 1 4.3660 -8.0854 -1.2321 35 1 0.7625 -12.3405 0.6426 36 1 3.8334 -12.6974 -2.3263 37 1 1.7016 -10.1102 1.0123 38 1 0.7951 -9.5547 -0.4264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751653832.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:22 Heat of formation + Delta-G solvation = -66.672209 kcal Electronic energy + Delta-G solvation = -25785.975212 eV Core-core repulsion = 21630.908968 eV Total energy + Delta-G solvation = -4155.066245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.93062 -40.94703 -39.91691 -38.23765 -36.90701 -36.16064 -34.05776 -33.57370 -31.68640 -31.43074 -29.37483 -28.41915 -28.11967 -25.00161 -23.97558 -23.08035 -21.62896 -20.51125 -19.74226 -19.64869 -18.59337 -18.13502 -18.02265 -16.98097 -16.78063 -16.31416 -15.93876 -15.53889 -15.32329 -14.92302 -14.79037 -14.52235 -14.41304 -14.13712 -13.97719 -13.72477 -13.50588 -13.10801 -13.01150 -12.41884 -12.20296 -11.98672 -11.71445 -11.65918 -11.39368 -11.18737 -10.76594 -10.70755 -10.55506 -10.42223 -10.34248 -10.16455 -10.06617 -9.66036 -8.58665 -8.12985 -8.10465 -6.54330 -3.96503 1.40176 1.88065 2.00780 2.09425 2.45269 2.70116 2.81014 3.08856 3.21722 3.28811 3.67873 3.74899 3.86612 4.07071 4.31450 4.40051 4.49706 4.58863 4.71702 4.96821 5.01095 5.10252 5.11771 5.16023 5.21215 5.41131 5.46209 5.47638 5.60653 5.67622 5.98111 6.38378 6.44029 6.59745 6.82879 7.19009 7.44132 7.61561 7.72966 7.89883 8.43143 9.02828 9.34302 9.83625 10.62787 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.041097 B = 0.002038 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.148398 B =13734.173554 C =14221.430945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.552 5.552 10 C 0.437 3.563 11 O -0.576 6.576 12 C 0.060 3.940 13 O -0.318 6.318 14 C 0.472 3.528 15 O -0.505 6.505 16 C -0.094 4.094 17 H 0.135 0.865 18 C -0.138 4.138 19 C 0.520 3.480 20 O -0.519 6.519 21 N -0.535 5.535 22 C 0.009 3.991 23 C 0.043 3.957 24 N -0.278 5.278 25 N -0.473 5.473 26 H 0.446 0.554 27 C 0.044 3.956 28 C 0.114 3.886 29 H 0.274 0.726 30 H 0.395 0.605 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.126 0.874 35 H 0.189 0.811 36 H 0.193 0.807 37 H 0.097 0.903 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.464 -23.040 -0.419 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.189 5.189 10 C 0.221 3.779 11 O -0.460 6.460 12 C -0.017 4.017 13 O -0.232 6.232 14 C 0.313 3.687 15 O -0.394 6.394 16 C -0.114 4.114 17 H 0.153 0.847 18 C -0.178 4.178 19 C 0.309 3.691 20 O -0.394 6.394 21 N -0.262 5.262 22 C -0.094 4.094 23 C -0.145 4.145 24 N -0.100 5.100 25 N -0.185 5.185 26 H 0.290 0.710 27 C -0.105 4.105 28 C -0.008 4.008 29 H 0.084 0.916 30 H 0.229 0.771 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.134 0.866 34 H 0.144 0.856 35 H 0.206 0.794 36 H 0.209 0.791 37 H 0.115 0.885 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.772 -24.326 -0.588 24.397 hybrid contribution -0.103 1.429 -0.274 1.458 sum 1.669 -22.897 -0.861 22.974 Atomic orbital electron populations 1.69620 1.06007 1.28446 1.49595 1.25322 0.95700 0.99918 0.96833 0.85737 0.79723 0.80703 0.77825 1.19062 1.20607 1.20615 1.19778 0.93524 0.81702 1.48143 0.87507 1.41714 1.09389 1.04108 1.63679 1.19294 0.88347 0.84043 0.86189 1.90573 1.13357 1.86740 1.55290 1.22823 0.90765 0.84414 1.03717 1.86542 1.40325 1.13899 1.82438 1.22934 0.87990 0.84879 0.72855 1.90684 1.16470 1.86700 1.45540 1.21826 0.97403 0.90326 1.01860 0.84685 1.22298 1.04749 0.93762 0.96959 1.20858 0.79124 0.89469 0.79683 1.90683 1.39836 1.73356 1.35567 1.45161 1.37152 1.03007 1.40874 1.17562 1.03941 0.82865 1.05006 1.23726 0.99866 0.90024 1.00930 1.77292 1.07303 1.18259 1.07194 1.46162 1.30607 1.07853 1.33898 0.70962 1.22561 1.01718 0.84208 1.02011 1.22137 0.95714 0.86225 0.96722 0.91637 0.77149 0.89289 0.89339 0.86551 0.85597 0.79414 0.79072 0.88503 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.44 13.05 55.50 0.72 -22.72 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.22 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.30 -8.09 9.68 -14.94 -0.14 -8.23 16 8 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.36 5.29 -10.96 -0.06 -13.42 16 10 C 0.44 9.92 7.86 -10.98 -0.09 9.84 16 11 O -0.58 -15.23 16.08 -14.12 -0.23 -15.46 16 12 C 0.06 1.03 5.94 36.01 0.21 1.25 16 13 O -0.32 -5.08 9.75 -45.91 -0.45 -5.53 16 14 C 0.47 5.89 7.19 36.00 0.26 6.15 16 15 O -0.51 -7.11 15.25 -18.75 -0.29 -7.39 16 16 C -0.09 -0.81 3.66 -90.14 -0.33 -1.14 16 17 H 0.14 0.90 8.14 -51.93 -0.42 0.47 16 18 C -0.14 -1.25 6.41 -26.74 -0.17 -1.42 16 19 C 0.52 5.58 7.98 -10.86 -0.09 5.49 16 20 O -0.52 -6.94 15.64 5.54 0.09 -6.85 16 21 N -0.54 -5.00 3.16 -112.48 -0.36 -5.35 16 22 C 0.01 0.08 6.80 -83.88 -0.57 -0.49 16 23 C 0.04 0.37 11.53 -17.22 -0.20 0.17 16 24 N -0.28 -2.64 12.69 30.70 0.39 -2.25 16 25 N -0.47 -3.58 7.40 30.69 0.23 -3.36 16 26 H 0.45 1.88 8.96 -182.62 -1.64 0.24 16 27 C 0.04 0.39 11.18 -16.68 -0.19 0.20 16 28 C 0.11 0.88 6.29 -3.12 -0.02 0.86 16 29 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 31 H 0.09 1.37 8.13 -51.93 -0.42 0.94 16 32 H 0.09 1.37 8.13 -51.93 -0.42 0.94 16 33 H 0.12 1.07 7.89 -51.93 -0.41 0.66 16 34 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.19 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.19 1.68 6.51 -52.48 -0.34 1.34 16 37 H 0.10 0.53 8.13 -51.93 -0.42 0.11 16 38 H 0.10 0.85 6.96 -51.93 -0.36 0.49 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -34.72 341.62 -6.36 -41.08 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.12 Total: 7.69 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: -1.42 Total: 13.21 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.93 Total: -47.09 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.87 Total: -35.23 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.72 -6.36 -41.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751653832.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.596 kcal (2) G-P(sol) polarization free energy of solvation -34.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds