Wall clock time and date at job start Fri Apr 10 2020 18:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47457 * 299.99915 * 3 2 1 6 6 H 1.48501 * 109.47104 * 59.99987 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.47036 * 179.97438 * 12 10 9 14 14 C 1.34231 * 116.99983 * 179.97438 * 13 12 10 15 15 O 1.20822 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00053 * 180.02562 * 14 13 12 17 17 H 1.08999 * 110.85916 * 56.21211 * 16 14 13 18 18 C 1.54629 * 110.97037 * 292.37944 * 16 14 13 19 19 C 1.51282 * 104.19769 * 217.08488 * 18 16 14 20 20 O 1.21304 * 124.94065 * 196.21552 * 19 18 16 21 21 N 1.34415 * 110.11520 * 16.25189 * 19 18 16 22 22 C 1.40766 * 124.34875 * 180.38747 * 21 19 18 23 23 C 1.40249 * 126.07894 * 180.02562 * 22 21 19 24 24 N 1.30836 * 108.33523 * 180.02562 * 23 22 21 25 25 N 1.40064 * 108.36526 * 0.02562 * 24 23 22 26 26 H 0.97001 * 126.05039 * 180.02562 * 25 24 23 27 27 C 1.35756 * 126.08011 * 359.73795 * 22 21 19 28 28 C 1.46760 * 111.30158 * 0.40702 * 21 19 18 29 29 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 1.09002 * 110.48573 * 335.76355 * 18 16 14 34 34 H 1.09003 * 110.49053 * 98.40126 * 18 16 14 35 35 H 1.08001 * 125.83912 * 0.02562 * 23 22 21 36 36 H 1.08004 * 126.21869 * 0.02562 * 27 22 21 37 37 H 1.08996 * 110.24930 * 223.98454 * 28 21 19 38 38 H 1.09006 * 110.24553 * 101.98427 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 8 2.1875 -5.9665 -0.0016 14 6 1.6745 -7.2069 -0.0016 15 8 0.4767 -7.3653 -0.0017 16 6 2.5926 -8.4020 -0.0016 17 1 3.2782 -8.3647 0.8450 18 6 3.3658 -8.5059 -1.3366 19 6 3.4419 -9.9925 -1.6065 20 8 4.1967 -10.5172 -2.3979 21 7 2.5508 -10.6473 -0.8423 22 6 2.3742 -12.0438 -0.8478 23 6 1.4573 -12.7635 -0.0678 24 7 1.5873 -14.0349 -0.3479 25 7 2.5909 -14.1733 -1.3151 26 1 2.8953 -15.0069 -1.7066 27 6 3.0572 -12.9331 -1.6131 28 6 1.7855 -9.7192 -0.0017 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6170 -4.9209 0.8886 32 1 0.6176 -4.9205 -0.8913 33 1 2.8201 -8.0010 -2.1338 34 1 4.3660 -8.0854 -1.2321 35 1 0.7625 -12.3405 0.6426 36 1 3.8334 -12.6974 -2.3263 37 1 1.7016 -10.1102 1.0123 38 1 0.7951 -9.5547 -0.4264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751653832.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:21 Heat of formation + Delta-G solvation = -91.373537 kcal Electronic energy + Delta-G solvation = -25787.046342 eV Core-core repulsion = 21630.908968 eV Total energy + Delta-G solvation = -4156.137374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.65415 -41.85791 -40.87227 -39.96246 -37.90838 -37.24464 -35.99991 -34.31241 -33.37994 -32.33753 -30.41290 -29.51323 -28.93274 -26.69133 -25.01465 -23.78332 -22.34910 -21.49017 -21.35261 -20.47126 -20.04387 -19.34672 -18.92727 -17.96717 -17.94944 -17.42924 -17.32932 -16.68918 -16.29470 -16.13615 -15.77676 -15.68279 -15.53830 -15.44230 -14.91053 -14.75117 -14.46157 -14.29925 -13.80596 -13.72883 -13.60025 -13.52753 -12.93093 -12.72105 -12.53780 -12.43690 -12.09749 -12.07257 -11.83178 -11.69943 -11.55502 -11.43164 -11.02838 -10.71963 -10.47035 -10.08606 -8.80878 -8.50362 -6.00323 0.71532 1.02159 1.14782 1.21775 1.36603 1.45362 1.57217 1.62493 1.90926 1.98462 2.15582 2.31189 2.91876 3.11067 3.15813 3.21782 3.59411 3.65839 3.90308 3.92568 3.99852 4.16263 4.22639 4.27761 4.40841 4.46219 4.49218 4.61075 4.76604 4.81482 5.05791 5.32531 5.40134 5.70522 5.87422 5.92172 6.27556 6.47508 6.57125 6.60687 6.94213 7.06242 7.43891 7.97359 8.66713 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.041097 B = 0.002038 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.148398 B =13734.173554 C =14221.430945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.996 3.004 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.084 0.916 9 N -0.560 5.560 10 C 0.436 3.564 11 O -0.617 6.617 12 C 0.072 3.928 13 O -0.337 6.337 14 C 0.477 3.523 15 O -0.518 6.518 16 C -0.083 4.083 17 H 0.162 0.838 18 C -0.135 4.135 19 C 0.515 3.485 20 O -0.552 6.552 21 N -0.529 5.529 22 C -0.013 4.013 23 C 0.047 3.953 24 N -0.300 5.300 25 N -0.463 5.463 26 H 0.458 0.542 27 C 0.042 3.958 28 C 0.117 3.883 29 H 0.280 0.720 30 H 0.400 0.600 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.214 0.786 36 H 0.191 0.809 37 H 0.127 0.873 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.872 -23.588 0.300 23.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.102 0.898 9 N -0.198 5.198 10 C 0.223 3.777 11 O -0.504 6.504 12 C -0.005 4.005 13 O -0.252 6.252 14 C 0.320 3.680 15 O -0.407 6.407 16 C -0.102 4.102 17 H 0.179 0.821 18 C -0.175 4.175 19 C 0.305 3.695 20 O -0.431 6.431 21 N -0.255 5.255 22 C -0.115 4.115 23 C -0.141 4.141 24 N -0.123 5.123 25 N -0.177 5.177 26 H 0.305 0.695 27 C -0.108 4.108 28 C -0.005 4.005 29 H 0.089 0.911 30 H 0.235 0.765 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.151 0.849 35 H 0.231 0.769 36 H 0.207 0.793 37 H 0.145 0.855 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.130 -24.917 0.143 24.943 hybrid contribution 0.066 1.489 -0.517 1.578 sum 1.196 -23.428 -0.374 23.461 Atomic orbital electron populations 1.69673 1.06873 1.29567 1.49443 1.26087 0.96567 1.02521 0.95847 0.84824 0.78124 0.76799 0.78327 1.19567 1.19646 1.19574 1.19737 0.92921 0.83427 1.50345 0.89768 1.41757 1.09581 1.04235 1.64181 1.20195 0.88116 0.85490 0.83896 1.90540 1.15485 1.87731 1.56628 1.22546 0.90038 0.82247 1.05709 1.86543 1.40617 1.14839 1.83160 1.23520 0.88366 0.84334 0.71779 1.90684 1.17306 1.86614 1.46113 1.21898 0.97056 0.88795 1.02486 0.82060 1.22285 1.05271 0.92734 0.97213 1.21081 0.78988 0.90032 0.79420 1.90663 1.41339 1.73994 1.37077 1.45186 1.36656 1.03191 1.40501 1.17803 1.04814 0.83020 1.05890 1.24124 0.99662 0.89519 1.00789 1.77262 1.08110 1.18945 1.07998 1.46199 1.29983 1.08132 1.33366 0.69472 1.22637 1.01562 0.84762 1.01806 1.22261 0.94845 0.85399 0.97977 0.91055 0.76546 0.87075 0.87354 0.86773 0.84913 0.76910 0.79265 0.85520 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.41 13.05 21.66 0.28 -47.12 16 2 C -0.01 -0.49 5.50 84.92 0.47 -0.02 16 3 Si 1.00 41.16 29.55 68.60 2.03 43.18 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.34 -18.23 9.68 84.04 0.81 -17.42 16 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.56 -27.36 5.29 -306.98 -1.62 -28.98 16 10 C 0.44 19.88 7.86 87.66 0.69 20.57 16 11 O -0.62 -33.19 16.08 15.72 0.25 -32.94 16 12 C 0.07 2.36 5.94 71.24 0.42 2.78 16 13 O -0.34 -10.25 9.75 -45.07 -0.44 -10.69 16 14 C 0.48 10.89 7.19 71.24 0.51 11.40 16 15 O -0.52 -13.37 15.25 21.98 0.34 -13.03 16 16 C -0.08 -1.23 3.66 -10.48 -0.04 -1.26 16 17 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 18 C -0.14 -2.27 6.41 30.59 0.20 -2.08 16 19 C 0.52 10.58 7.98 87.90 0.70 11.28 16 20 O -0.55 -14.72 15.64 -3.10 -0.05 -14.77 16 21 N -0.53 -8.97 3.16 -628.37 -1.99 -10.96 16 22 C -0.01 -0.23 6.80 37.62 0.26 0.03 16 23 C 0.05 0.71 11.53 85.33 0.98 1.70 16 24 N -0.30 -5.24 12.69 -56.77 -0.72 -5.96 16 25 N -0.46 -6.52 7.40 -56.81 -0.42 -6.94 16 26 H 0.46 3.42 8.96 -213.34 -1.91 1.51 16 27 C 0.04 0.71 11.18 83.50 0.93 1.65 16 28 C 0.12 1.47 6.29 86.83 0.55 2.02 16 29 H 0.28 13.52 8.31 -92.71 -0.77 12.75 16 30 H 0.40 18.36 7.90 -92.71 -0.73 17.63 16 31 H 0.11 3.18 8.13 -2.39 -0.02 3.16 16 32 H 0.11 3.15 8.13 -2.39 -0.02 3.13 16 33 H 0.11 1.99 7.89 -2.39 -0.02 1.97 16 34 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.21 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.19 3.31 6.51 -2.91 -0.02 3.29 16 37 H 0.13 0.89 8.13 -2.39 -0.02 0.87 16 38 H 0.10 1.39 6.96 -2.38 -0.02 1.37 16 Total: -1.00 -74.94 341.62 2.65 -72.29 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -1.49 Total: 25.29 kcal Atomic # 6 Polarization: 24.14 SS G_CDS: 6.48 Total: 30.63 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -4.47 Total: -99.96 kcal Atomic # 8 Polarization: -71.53 SS G_CDS: 0.10 Total: -71.43 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -74.94 2.65 -72.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751653832.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.082 kcal (2) G-P(sol) polarization free energy of solvation -74.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds