Wall clock time and date at job start Fri Apr 10 2020 18:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.20826 * 119.99723 * 359.97438 * 16 15 14 18 18 O 1.34223 * 119.99743 * 179.97438 * 16 15 14 19 19 C 1.45199 * 116.99656 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47216 * 179.97438 * 19 18 16 21 21 O 1.21233 * 119.99596 * 0.02562 * 20 19 18 22 22 N 1.34774 * 120.00329 * 180.02562 * 20 19 18 23 23 C 1.34776 * 120.00566 * 180.02562 * 22 20 19 24 24 N 1.34769 * 120.00259 * 180.02562 * 23 22 20 25 25 O 1.21542 * 119.99491 * 359.97438 * 23 22 20 26 26 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 30 30 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 31 31 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 32 32 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 33 33 H 1.09002 * 109.47370 * 300.00168 * 19 18 16 34 34 H 1.09004 * 109.47479 * 60.00306 * 19 18 16 35 35 H 0.97007 * 119.99850 * 359.97438 * 22 20 19 36 36 H 0.96996 * 120.00126 * 359.97438 * 24 23 22 37 37 H 0.97006 * 119.99564 * 179.97438 * 24 23 22 38 38 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6176 -7.1972 -1.8881 18 8 0.6629 -8.9978 -1.0337 19 6 0.4679 -9.4957 -2.3837 20 6 -0.2170 -10.8370 -2.3303 21 8 -0.5119 -11.3249 -1.2604 22 7 -0.5015 -11.4943 -3.4720 23 6 -1.1144 -12.6937 -3.4244 24 7 -1.3984 -13.3511 -4.5661 25 8 -1.4101 -13.1828 -2.3518 26 6 1.4365 -4.7345 0.2253 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2811 -4.5471 0.1902 30 1 4.1533 -6.7247 0.4045 31 1 2.1300 -7.9004 1.0433 32 1 0.5456 -7.0924 0.9734 33 1 -0.1499 -8.7939 -2.9441 34 1 1.4350 -9.6013 -2.8753 35 1 -0.2658 -11.1038 -4.3282 36 1 -1.1621 -12.9610 -5.4221 37 1 -1.8393 -14.2146 -4.5317 38 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760626042.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:26 Heat of formation + Delta-G solvation = -175.112186 kcal Electronic energy + Delta-G solvation = -25320.017954 eV Core-core repulsion = 21127.956648 eV Total energy + Delta-G solvation = -4192.061306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.36367 -41.62340 -40.67499 -39.45442 -38.40665 -37.36373 -35.93619 -34.40889 -34.34364 -33.62650 -31.01244 -30.43989 -28.53013 -27.24821 -24.48130 -23.34655 -23.01357 -21.78571 -21.73357 -19.97926 -19.50803 -19.07013 -18.77632 -18.47953 -18.02963 -17.28973 -17.04666 -16.91601 -16.71081 -16.33807 -16.10057 -15.85722 -15.48836 -15.46538 -15.11712 -15.02503 -14.44380 -14.10311 -14.04254 -13.78992 -13.57810 -12.96727 -12.90438 -12.48529 -12.42835 -12.25729 -12.22932 -12.10315 -11.92357 -11.66789 -11.40862 -11.19901 -10.99681 -10.79519 -10.78589 -9.68939 -8.98824 -8.45848 -6.14236 0.39795 0.74626 0.81800 0.98072 1.14637 1.35672 1.45083 1.53410 1.94240 2.11349 2.18662 2.84622 3.04987 3.18108 3.41372 3.56322 3.72278 3.95899 4.00304 4.08055 4.11143 4.31144 4.39575 4.56093 4.63425 4.74818 4.86982 5.01719 5.13065 5.17144 5.30473 5.37272 5.63832 5.71607 5.74456 5.82867 6.03564 6.22211 6.39409 6.67790 6.94547 6.98822 7.37149 7.80025 8.77487 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.025623 B = 0.002028 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.504074 B =13801.142404 C =14372.608534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.102 0.898 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.240 4.240 12 C -0.072 4.072 13 C -0.175 4.175 14 C -0.036 4.036 15 C -0.064 4.064 16 C 0.475 3.525 17 O -0.521 6.521 18 O -0.347 6.347 19 C 0.048 3.952 20 C 0.525 3.475 21 O -0.503 6.503 22 N -0.666 5.666 23 C 0.694 3.306 24 N -0.825 5.825 25 O -0.598 6.598 26 C -0.188 4.188 27 H 0.272 0.728 28 H 0.119 0.881 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.439 0.561 36 H 0.423 0.577 37 H 0.428 0.572 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.019 -22.958 -11.317 25.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.119 0.881 9 O -0.140 6.140 10 C 0.061 3.939 11 C -0.260 4.260 12 C -0.090 4.090 13 C -0.193 4.193 14 C -0.036 4.036 15 C -0.101 4.101 16 C 0.319 3.681 17 O -0.408 6.408 18 O -0.263 6.263 19 C -0.029 4.029 20 C 0.311 3.689 21 O -0.373 6.373 22 N -0.337 5.337 23 C 0.392 3.608 24 N -0.397 5.397 25 O -0.474 6.474 26 C -0.208 4.208 27 H 0.081 0.919 28 H 0.137 0.863 29 H 0.166 0.834 30 H 0.169 0.831 31 H 0.171 0.829 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.280 0.720 36 H 0.255 0.745 37 H 0.262 0.738 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.349 -23.189 -10.050 25.494 hybrid contribution -0.076 1.079 -1.068 1.520 sum 3.273 -22.110 -11.119 24.964 Atomic orbital electron populations 1.70193 1.08023 1.28734 1.49041 1.26609 0.96884 1.02774 0.95959 0.84574 0.77820 0.74518 0.79215 1.18860 1.19632 1.17576 1.21821 0.92521 0.81429 1.53098 0.88081 1.83939 1.35914 1.12550 1.81646 1.19861 0.91694 0.87897 0.94467 1.21346 0.93077 1.00383 1.11149 1.21147 1.00363 0.91325 0.96196 1.21012 0.93227 0.98340 1.06706 1.19073 0.93890 0.92133 0.98546 1.20381 1.05272 0.93396 0.91035 1.23949 0.73226 0.77903 0.93067 1.90732 1.48433 1.60398 1.41272 1.86547 1.72296 1.35856 1.31626 1.22868 1.04574 0.92086 0.83344 1.20631 0.78270 0.86561 0.83461 1.90885 1.48405 1.67579 1.30411 1.43594 1.58425 1.19674 1.11992 1.16352 0.78376 0.80701 0.85373 1.42826 1.65242 1.25059 1.06552 1.91116 1.57577 1.68287 1.30459 1.20234 0.99472 0.90398 1.10671 0.91895 0.86322 0.83444 0.83085 0.82874 0.85210 0.85209 0.84354 0.72015 0.74468 0.73788 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.07 13.67 21.61 0.30 -56.78 16 2 C -0.03 -1.44 5.49 84.83 0.47 -0.97 16 3 Si 1.02 43.09 29.55 68.60 2.03 45.12 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 7 C -0.41 -24.26 9.49 67.92 0.64 -23.62 16 8 H 0.10 5.44 5.21 -2.91 -0.02 5.43 16 9 O -0.23 -14.26 9.76 -22.74 -0.22 -14.48 16 10 C 0.11 5.60 6.65 22.58 0.15 5.75 16 11 C -0.24 -10.52 9.17 22.39 0.21 -10.32 16 12 C -0.07 -2.45 10.04 22.25 0.22 -2.22 16 13 C -0.17 -5.27 9.70 22.30 0.22 -5.05 16 14 C -0.04 -1.18 4.37 -19.88 -0.09 -1.27 16 15 C -0.06 -1.49 5.94 29.10 0.17 -1.32 16 16 C 0.47 12.12 7.95 71.24 0.57 12.68 16 17 O -0.52 -16.39 15.78 21.96 0.35 -16.05 16 18 O -0.35 -7.99 9.75 -44.99 -0.44 -8.43 16 19 C 0.05 0.73 5.94 71.24 0.42 1.15 16 20 C 0.52 10.05 7.85 87.66 0.69 10.74 16 21 O -0.50 -16.13 14.90 26.72 0.40 -15.73 16 22 N -0.67 -6.89 5.24 -440.53 -2.31 -9.20 16 23 C 0.69 10.96 8.78 179.06 1.57 12.53 16 24 N -0.82 -3.03 8.88 -184.80 -1.64 -4.67 16 25 O -0.60 -17.95 15.58 18.91 0.29 -17.66 16 26 C -0.19 -8.09 9.65 22.39 0.22 -7.87 16 27 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 29 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 30 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 31 H 0.15 2.42 8.08 -2.39 -0.02 2.40 16 32 H 0.13 2.72 8.08 -2.39 -0.02 2.70 16 33 H 0.13 1.48 8.13 -2.39 -0.02 1.46 16 34 H 0.14 1.29 8.13 -2.38 -0.02 1.27 16 35 H 0.44 -0.54 8.71 -92.70 -0.81 -1.34 16 36 H 0.42 -2.08 8.84 -92.71 -0.82 -2.90 16 37 H 0.43 1.13 8.93 -92.70 -0.83 0.30 16 38 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -98.99 347.70 2.92 -96.06 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -1.28 Total: 11.59 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 5.46 Total: -9.78 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -3.65 Total: -70.64 kcal Atomic # 8 Polarization: -72.72 SS G_CDS: 0.38 Total: -72.34 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -98.99 2.92 -96.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760626042.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.047 kcal (2) G-P(sol) polarization free energy of solvation -98.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds