Wall clock time and date at job start Fri Apr 10 2020 18:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86802 * 120.00032 * 2 1 4 4 H 1.48492 * 109.46970 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46843 * 300.00304 * 3 2 1 6 6 H 1.48503 * 109.47057 * 60.00072 * 3 2 1 7 7 C 1.38652 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99817 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00286 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00307 * 185.05811 * 9 7 2 11 11 C 1.38904 * 120.06836 * 354.48539 * 10 9 7 12 12 C 1.38077 * 119.93083 * 179.97438 * 11 10 9 13 13 C 1.38319 * 120.06796 * 359.74411 * 12 11 10 14 14 C 1.38275 * 120.14113 * 0.51581 * 13 12 11 15 15 C 1.50698 * 119.96661 * 179.76291 * 14 13 12 16 16 C 1.50697 * 109.47110 * 269.72206 * 15 14 13 17 17 O 1.20827 * 120.00009 * 359.97438 * 16 15 14 18 18 O 1.34235 * 120.00033 * 180.02562 * 16 15 14 19 19 C 1.45203 * 116.99980 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.47153 * 179.97438 * 19 18 16 21 21 C 1.52996 * 112.99834 * 48.16827 * 20 19 18 22 22 O 1.42891 * 109.47812 * 309.67236 * 21 20 19 23 23 C 1.54036 * 113.81410 * 276.18800 * 20 19 18 24 24 O 1.44174 * 85.51692 * 223.19680 * 23 20 19 25 25 C 1.44174 * 93.34206 * 24.19320 * 24 23 20 26 26 C 1.38121 * 120.06570 * 359.48525 * 14 13 12 27 27 H 0.97001 * 120.00050 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.03058 * 0.02562 * 11 10 9 29 29 H 1.08006 * 119.96286 * 180.02562 * 12 11 10 30 30 H 1.08005 * 119.93053 * 180.27601 * 13 12 11 31 31 H 1.08997 * 109.47308 * 29.72274 * 15 14 13 32 32 H 1.09003 * 109.47279 * 149.71988 * 15 14 13 33 33 H 1.08999 * 109.46806 * 299.99950 * 19 18 16 34 34 H 1.08997 * 109.47217 * 59.99698 * 19 18 16 35 35 H 1.09008 * 109.46743 * 69.67250 * 21 20 19 36 36 H 1.08999 * 109.46901 * 189.66665 * 21 20 19 37 37 H 0.96695 * 114.00476 * 180.02562 * 22 21 20 38 38 H 1.09000 * 113.86430 * 337.34317 * 23 20 19 39 39 H 1.08999 * 113.86593 * 109.04695 * 23 20 19 40 40 H 1.09002 * 113.87007 * 221.66440 * 25 24 23 41 41 H 1.08994 * 113.86507 * 89.95244 * 25 24 23 42 42 H 1.08004 * 120.03312 * 180.23431 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4574 -3.4395 0.0925 12 6 4.2025 -4.5969 0.2012 13 6 3.5687 -5.8197 0.3282 14 6 2.1876 -5.8885 0.3361 15 6 1.5012 -7.2234 0.4693 16 6 1.2651 -7.8058 -0.9004 17 8 1.6177 -7.1989 -1.8839 18 8 0.6623 -8.9984 -1.0278 19 6 0.4672 -9.4975 -2.3774 20 6 -0.2291 -10.8587 -2.3220 21 6 -1.4526 -10.8674 -1.4035 22 8 -1.0989 -10.3161 -0.1335 23 6 0.7323 -12.0402 -2.0930 24 8 -0.0355 -12.7152 -3.1097 25 6 -0.4862 -11.4827 -3.7067 26 6 1.4367 -4.7343 0.2278 27 1 -0.4850 0.8401 0.0004 28 1 3.9528 -2.4844 -0.0016 29 1 5.2813 -4.5468 0.1915 30 1 4.1537 -6.7232 0.4175 31 1 2.1305 -7.8995 1.0481 32 1 0.5460 -7.0917 0.9777 33 1 -0.1500 -8.7958 -2.9385 34 1 1.4343 -9.6042 -2.8687 35 1 -2.2469 -10.2695 -1.8506 36 1 -1.8000 -11.8920 -1.2708 37 1 -1.8281 -10.2906 0.5011 38 1 1.7624 -11.8332 -2.3831 39 1 0.6485 -12.4918 -1.1045 40 1 -1.5365 -11.4919 -3.9980 41 1 0.1718 -11.1053 -4.4894 42 1 0.3580 -4.7883 0.2378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763713128.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:40 Heat of formation + Delta-G solvation = -141.518925 kcal Electronic energy + Delta-G solvation = -26533.332592 eV Core-core repulsion = 22446.268342 eV Total energy + Delta-G solvation = -4087.064249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29438 -40.13322 -38.91488 -36.97171 -36.60864 -35.91976 -32.51838 -32.22317 -31.85081 -29.24066 -27.66955 -27.04006 -26.39124 -25.41263 -25.09299 -21.86790 -21.46157 -20.23719 -19.46271 -17.84220 -17.66407 -17.35274 -16.98444 -16.86230 -16.67330 -16.19251 -15.83837 -15.28567 -15.02937 -14.68725 -14.48258 -14.37418 -13.84097 -13.63896 -13.49974 -13.22691 -12.99600 -12.73492 -12.55105 -12.42076 -11.88504 -11.67391 -11.56659 -11.41434 -11.26744 -11.14919 -10.85094 -10.76147 -10.61336 -10.45530 -10.41762 -10.25380 -10.20268 -10.02459 -9.32063 -8.82380 -8.08474 -7.21098 -6.42412 -4.01381 2.00722 2.38883 2.48727 2.79587 3.13757 3.15214 3.16712 3.20891 3.55432 3.98442 4.04141 4.42766 4.48980 4.62257 4.78037 4.85089 4.92589 5.00545 5.04640 5.10211 5.13054 5.15057 5.20799 5.27570 5.39333 5.51976 5.57178 5.58937 5.66647 5.69416 5.78016 5.94247 6.18277 6.34621 6.55695 6.68984 6.92443 7.08808 7.26197 7.37752 7.42855 7.45169 7.82682 8.02649 8.03687 9.03477 9.74093 10.75939 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.024407 B = 0.002335 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.955539 B =11986.060235 C =12405.591645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.154 3.846 11 C -0.228 4.228 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.042 4.042 15 C -0.061 4.061 16 C 0.456 3.544 17 O -0.498 6.498 18 O -0.326 6.326 19 C 0.078 3.922 20 C -0.131 4.131 21 C 0.103 3.897 22 O -0.545 6.545 23 C 0.051 3.949 24 O -0.379 6.379 25 C 0.055 3.945 26 C -0.173 4.173 27 H 0.269 0.731 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.376 0.624 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.115 -22.199 -1.671 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.083 6.083 10 C 0.101 3.899 11 C -0.247 4.247 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.043 4.043 15 C -0.099 4.099 16 C 0.298 3.702 17 O -0.385 6.385 18 O -0.242 6.242 19 C 0.003 3.997 20 C -0.131 4.131 21 C 0.025 3.975 22 O -0.349 6.349 23 C -0.025 4.025 24 O -0.298 6.298 25 C -0.022 4.022 26 C -0.192 4.192 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.222 0.778 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.915 -22.034 -2.375 22.181 hybrid contribution 0.011 1.054 0.001 1.054 sum -0.904 -20.980 -2.374 21.133 Atomic orbital electron populations 1.70051 1.05945 1.27476 1.46454 1.25282 0.95843 0.98798 0.96644 0.85647 0.79140 0.80419 0.78214 1.19116 1.20184 1.20155 1.21370 0.91816 0.80820 1.52664 0.89048 1.83976 1.34248 1.11383 1.78692 1.19267 0.90250 0.87967 0.92444 1.21205 0.93837 0.99026 1.10664 1.20686 0.98443 0.92273 0.97896 1.20374 0.93228 0.97059 1.10740 1.18704 0.93336 0.91672 1.00559 1.20204 1.03445 0.94898 0.91335 1.23901 0.74322 0.79085 0.92894 1.90712 1.47218 1.60140 1.40412 1.86737 1.71629 1.35150 1.30698 1.22870 1.00297 0.93635 0.82895 1.23904 0.97350 0.94973 0.96865 1.21679 0.93502 0.97493 0.84819 1.86697 1.39843 1.85318 1.23064 1.24080 0.95245 0.89712 0.93500 1.89700 1.66698 1.26390 1.47009 1.23981 1.01801 0.82811 0.93644 1.19962 0.99134 0.89970 1.10125 0.92130 0.85525 0.87362 0.87781 0.87377 0.87152 0.91009 0.91092 0.93139 0.92827 0.77772 0.89669 0.88284 0.88333 0.89088 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.64 13.67 55.48 0.76 -24.89 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.79 29.55 -169.99 -5.02 15.77 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.39 -11.10 9.49 30.89 0.29 -10.81 16 8 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 9 O -0.18 -5.23 9.76 0.06 0.00 -5.23 16 10 C 0.15 3.85 6.65 -39.11 -0.26 3.59 16 11 C -0.23 -5.14 9.17 -39.39 -0.36 -5.50 16 12 C -0.07 -1.43 10.04 -39.61 -0.40 -1.83 16 13 C -0.20 -3.52 9.70 -39.54 -0.38 -3.90 16 14 C -0.04 -0.78 4.37 -104.65 -0.46 -1.24 16 15 C -0.06 -0.86 5.94 -29.04 -0.17 -1.03 16 16 C 0.46 7.02 7.95 36.00 0.29 7.30 16 17 O -0.50 -9.56 15.78 -18.75 -0.30 -9.86 16 18 O -0.33 -4.22 7.70 -47.04 -0.36 -4.58 16 19 C 0.08 0.84 4.97 37.16 0.18 1.03 16 20 C -0.13 -1.09 1.13 -153.43 -0.17 -1.27 16 21 C 0.10 0.78 6.46 37.16 0.24 1.02 16 22 O -0.54 -4.72 11.15 -58.67 -0.65 -5.37 16 23 C 0.05 0.43 8.32 37.61 0.31 0.74 16 24 O -0.38 -3.56 12.38 -35.23 -0.44 -4.00 16 25 C 0.05 0.38 8.36 37.61 0.31 0.70 16 26 C -0.17 -3.78 9.65 -39.40 -0.38 -4.16 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.13 2.83 5.64 -52.48 -0.30 2.54 16 29 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.10 1.58 8.06 -52.48 -0.42 1.15 16 31 H 0.11 1.21 8.08 -51.93 -0.42 0.79 16 32 H 0.11 1.36 8.08 -51.93 -0.42 0.94 16 33 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 34 H 0.07 0.75 7.92 -51.93 -0.41 0.34 16 35 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 36 H 0.05 0.36 8.06 -51.93 -0.42 -0.06 16 37 H 0.38 1.73 9.12 45.56 0.42 2.15 16 38 H 0.09 0.65 7.96 -51.93 -0.41 0.23 16 39 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.10 0.52 8.10 -51.93 -0.42 0.10 16 41 H 0.09 0.54 8.10 -51.93 -0.42 0.12 16 42 H 0.11 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -35.75 362.12 -6.35 -42.11 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.75 Total: 4.99 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.05 Total: -14.39 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.76 Total: -24.89 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -1.75 Total: -29.04 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.75 -6.35 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763713128.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.412 kcal (2) G-P(sol) polarization free energy of solvation -35.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds