Wall clock time and date at job start Fri Apr 10 2020 18:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34767 * 124.17812 * 2 1 4 4 O 1.21238 * 127.15494 * 0.07196 * 3 2 1 5 5 C 1.51577 * 105.68868 * 180.02562 * 3 2 1 6 6 N 1.47319 * 103.59260 * 359.97438 * 5 3 2 7 7 N 1.40095 * 126.69143 * 179.97438 * 6 5 3 8 8 C 1.34775 * 120.00195 * 104.99969 * 7 6 5 9 9 O 1.21593 * 120.00151 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99585 * 359.97438 * 8 7 6 11 11 C 1.40203 * 119.99577 * 179.72010 * 10 8 7 12 12 C 1.40396 * 125.97479 * 359.97438 * 11 10 8 13 13 C 1.35236 * 107.86734 * 179.85947 * 12 11 10 14 14 N 1.34959 * 107.86061 * 0.40020 * 13 12 11 15 15 C 1.46499 * 125.98042 * 179.74810 * 14 13 12 16 16 C 1.50694 * 109.47330 * 124.97049 * 15 14 13 17 17 H 1.07994 * 120.00373 * 0.02562 * 16 15 14 18 18 C 1.37886 * 120.00047 * 179.97438 * 16 15 14 19 19 N 1.31506 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99872 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47332 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47191 * 120.00427 * 20 18 16 23 23 H 1.48501 * 109.46915 * 240.00270 * 20 18 16 24 24 N 1.31212 * 125.97054 * 180.29973 * 11 10 8 25 25 C 1.33787 * 124.18048 * 180.30791 * 2 1 3 26 26 O 1.21541 * 123.77443 * 359.97438 * 25 2 1 27 27 H 1.09001 * 109.46731 * 90.00015 * 1 2 3 28 28 H 1.09000 * 109.46797 * 209.99705 * 1 2 3 29 29 H 1.09000 * 109.47147 * 329.99757 * 1 2 3 30 30 H 1.09001 * 110.60014 * 241.47311 * 5 3 2 31 31 H 1.08994 * 110.60241 * 118.52878 * 5 3 2 32 32 H 0.97004 * 119.99641 * 285.00274 * 7 6 5 33 33 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 34 34 H 1.08003 * 126.06259 * 0.02562 * 12 11 10 35 35 H 1.08001 * 126.07149 * 180.12001 * 13 12 11 36 36 H 1.08999 * 109.47259 * 244.97254 * 15 14 13 37 37 H 1.09007 * 109.46677 * 4.97376 * 15 14 13 38 38 H 0.97008 * 120.00260 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8340 2.2635 0.0012 5 6 3.6596 0.6342 -0.0007 6 7 3.5338 -0.8336 -0.0003 7 7 4.5817 -1.7635 -0.0012 8 6 4.8863 -2.4366 1.1260 9 8 5.7960 -3.2434 1.1253 10 7 4.1831 -2.2147 2.2542 11 6 4.4962 -2.9192 3.4252 12 6 5.5109 -3.8795 3.5636 13 6 5.4927 -4.3212 4.8417 14 7 4.5003 -3.6749 5.4889 15 6 4.1283 -3.8561 6.8942 16 6 4.1572 -2.5237 7.5974 17 1 4.4254 -1.6309 7.0521 18 6 3.8401 -2.4440 8.9370 19 7 3.5130 -3.5310 9.6009 20 14 3.8753 -0.7922 9.8085 21 1 4.2710 0.2671 8.8459 22 1 2.5261 -0.4894 10.3500 23 1 4.8562 -0.8410 10.9223 24 7 3.8881 -2.8005 4.5819 25 6 2.2166 -1.1068 -0.0059 26 8 1.7604 -2.2333 -0.0116 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 4.1782 0.9745 0.8957 31 1 4.1775 0.9749 -0.8971 32 1 5.0880 -1.9229 -0.8131 33 1 3.4576 -1.5708 2.2548 34 1 6.1878 -4.2056 2.7877 35 1 6.1520 -5.0630 5.2676 36 1 3.1242 -4.2762 6.9529 37 1 4.8347 -4.5348 7.3724 38 1 3.2895 -3.4750 10.5433 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782137821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:49 Heat of formation + Delta-G solvation = 45.735452 kcal Electronic energy + Delta-G solvation = -26749.250000 eV Core-core repulsion = 22631.350868 eV Total energy + Delta-G solvation = -4117.899131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.60084 -42.29213 -41.02798 -39.83353 -37.75205 -36.91175 -36.35586 -35.26908 -33.75281 -32.60434 -30.98068 -28.91940 -28.50354 -28.21814 -25.29395 -24.23477 -23.53840 -22.41540 -21.90952 -21.01949 -19.74627 -19.52731 -18.67740 -18.22575 -18.07662 -17.83311 -17.45538 -17.02084 -16.74832 -16.48666 -16.20412 -15.91513 -15.56589 -15.47921 -15.20620 -14.92486 -14.54360 -14.27874 -13.84891 -13.80270 -13.71877 -13.54257 -12.97157 -12.74424 -12.55064 -12.31708 -12.16593 -11.91012 -11.60113 -11.47882 -11.38833 -11.14687 -11.02686 -10.72394 -10.45806 -9.80703 -9.15387 -8.33147 -6.47007 -0.10959 0.41295 0.98756 1.10037 1.37508 1.38887 1.47232 1.51259 1.57636 1.67893 2.19408 2.25762 2.37783 2.85179 2.99033 3.24078 3.72838 3.92573 4.11519 4.22425 4.29692 4.36430 4.42010 4.53476 4.67009 4.75770 4.84634 4.89806 4.96638 5.05055 5.37809 5.57358 5.59540 5.76087 5.80616 5.85827 6.10226 6.26721 6.35425 6.64618 6.79107 7.01554 7.17054 7.23057 8.74918 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.012732 B = 0.003365 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.717496 B = 8319.445868 C = 9641.211573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.571 5.571 3 C 0.535 3.465 4 O -0.482 6.482 5 C 0.071 3.929 6 N -0.437 5.437 7 N -0.461 5.461 8 C 0.729 3.271 9 O -0.565 6.565 10 N -0.631 5.631 11 C 0.278 3.722 12 C -0.289 4.289 13 C 0.061 3.939 14 N -0.342 5.342 15 C 0.272 3.728 16 C -0.547 4.547 17 H 0.053 0.947 18 C 0.019 3.981 19 N -0.921 5.921 20 Si 0.972 3.028 21 H -0.274 1.274 22 H -0.275 1.275 23 H -0.269 1.269 24 N -0.347 5.347 25 C 0.696 3.304 26 O -0.558 6.558 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.150 0.850 31 H 0.177 0.823 32 H 0.456 0.544 33 H 0.410 0.590 34 H 0.172 0.828 35 H 0.206 0.794 36 H 0.020 0.980 37 H 0.062 0.938 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.441 9.015 -22.760 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.318 5.318 3 C 0.323 3.677 4 O -0.352 6.352 5 C -0.052 4.052 6 N -0.270 5.270 7 N -0.221 5.221 8 C 0.428 3.572 9 O -0.437 6.437 10 N -0.281 5.281 11 C 0.022 3.978 12 C -0.320 4.320 13 C -0.088 4.088 14 N -0.124 5.124 15 C 0.153 3.847 16 C -0.585 4.585 17 H 0.071 0.929 18 C -0.181 4.181 19 N -0.560 5.560 20 Si 0.796 3.204 21 H -0.198 1.198 22 H -0.200 1.200 23 H -0.194 1.194 24 N -0.178 5.178 25 C 0.397 3.603 26 O -0.431 6.431 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.121 0.879 30 H 0.168 0.832 31 H 0.194 0.806 32 H 0.307 0.693 33 H 0.246 0.754 34 H 0.190 0.810 35 H 0.222 0.778 36 H 0.038 0.962 37 H 0.079 0.921 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.406 8.853 -21.696 23.436 hybrid contribution 0.017 0.299 -0.031 0.301 sum -0.389 9.152 -21.727 23.579 Atomic orbital electron populations 1.22125 0.73298 1.05434 1.05182 1.46365 1.10468 1.07033 1.67980 1.20940 0.88916 0.84162 0.73634 1.90872 1.79043 1.18467 1.46859 1.23204 0.95254 0.75800 1.10948 1.46067 0.98941 1.03330 1.78630 1.43734 1.28006 1.38073 1.12297 1.15721 0.81198 0.80570 0.79722 1.90976 1.32974 1.37341 1.82428 1.41284 1.37051 1.43253 1.06530 1.19057 0.96589 0.95654 0.86451 1.21666 1.06474 1.05829 0.98022 1.23206 0.93575 0.99251 0.92763 1.48843 1.24643 1.28735 1.10148 1.19368 0.96479 0.97935 0.70924 1.21425 1.48323 0.93644 0.95095 0.92880 1.25734 0.93888 1.00949 0.97576 1.69999 1.46008 1.29570 1.10379 0.85299 0.78230 0.78715 0.78163 1.19820 1.19995 1.19441 1.77249 1.23979 1.18120 0.98466 1.16133 0.81592 0.84589 0.77952 1.91067 1.75281 1.21801 1.54994 0.88878 0.89642 0.87914 0.83241 0.80580 0.69295 0.75447 0.81039 0.77774 0.96212 0.92053 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.73 127.77 1.37 2.35 16 2 N -0.57 -8.76 3.00 -796.66 -2.39 -11.16 16 3 C 0.54 6.90 8.31 87.94 0.73 7.63 16 4 O -0.48 -8.78 17.76 -2.90 -0.05 -8.84 16 5 C 0.07 0.48 7.88 85.76 0.68 1.15 16 6 N -0.44 -6.24 3.00 -480.31 -1.44 -7.68 16 7 N -0.46 -7.66 6.35 -184.74 -1.17 -8.84 16 8 C 0.73 19.72 8.62 179.05 1.54 21.26 16 9 O -0.56 -18.16 14.31 -4.01 -0.06 -18.22 16 10 N -0.63 -20.02 5.40 -321.22 -1.74 -21.76 16 11 C 0.28 11.23 8.11 133.31 1.08 12.31 16 12 C -0.29 -11.11 9.61 22.10 0.21 -10.90 16 13 C 0.06 2.35 11.44 83.52 0.96 3.31 16 14 N -0.34 -16.03 3.67 -351.86 -1.29 -17.32 16 15 C 0.27 14.07 6.26 85.63 0.54 14.60 16 16 C -0.55 -30.71 9.24 25.60 0.24 -30.47 16 17 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 18 C 0.02 1.04 5.46 84.66 0.46 1.50 16 19 N -0.92 -52.02 13.29 21.45 0.28 -51.74 16 20 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 N -0.35 -16.36 12.42 -54.43 -0.68 -17.04 16 25 C 0.70 13.82 7.62 179.44 1.37 15.19 16 26 O -0.56 -16.11 17.43 -3.84 -0.07 -16.18 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 1.23 7.87 -2.39 -0.02 1.21 16 29 H 0.10 1.07 8.00 -2.39 -0.02 1.05 16 30 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.18 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.46 4.71 8.93 -213.32 -1.90 2.81 16 33 H 0.41 11.94 7.23 -92.71 -0.67 11.27 16 34 H 0.17 6.23 5.91 -2.91 -0.02 6.21 16 35 H 0.21 6.13 8.06 -2.91 -0.02 6.11 16 36 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 3.08 8.07 -2.38 -0.02 3.06 16 38 H 0.27 14.36 8.31 -92.70 -0.77 13.59 16 Total: -1.00 -79.35 343.51 1.17 -78.18 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -1.42 Total: 17.31 kcal Atomic # 6 Polarization: 28.76 SS G_CDS: 9.17 Total: 37.93 kcal Atomic # 7 Polarization: -127.11 SS G_CDS: -8.42 Total: -135.53 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -0.18 Total: -43.23 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -79.35 1.17 -78.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782137821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.915 kcal (2) G-P(sol) polarization free energy of solvation -79.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds