Wall clock time and date at job start Fri Apr 10 2020 18:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00316 * 2 1 4 4 H 1.48495 * 109.47757 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47195 * 299.99991 * 3 2 1 6 6 H 1.48511 * 109.47139 * 59.99678 * 3 2 1 7 7 C 1.38949 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00428 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99727 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00257 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99898 * 179.97438 * 10 9 7 13 13 O 1.45195 * 109.47312 * 179.97438 * 12 10 9 14 14 C 1.34220 * 117.00370 * 179.97438 * 13 12 10 15 15 O 1.20827 * 119.99664 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00505 * 179.97438 * 14 13 12 17 17 H 1.09000 * 109.53673 * 32.07816 * 16 14 13 18 18 C 1.53098 * 109.50804 * 271.97308 * 16 14 13 19 19 O 1.43015 * 109.25977 * 183.21345 * 18 16 14 20 20 C 1.43007 * 113.73781 * 58.67144 * 19 18 16 21 21 C 1.53100 * 109.25978 * 301.32686 * 20 19 18 22 22 N 1.47011 * 109.50986 * 152.18811 * 16 14 13 23 23 C 1.46891 * 111.00155 * 302.33197 * 22 16 14 24 24 C 1.53007 * 109.46896 * 310.28701 * 23 22 16 25 25 F 1.39895 * 109.47362 * 66.09919 * 24 23 22 26 26 F 1.39895 * 109.46975 * 306.09810 * 24 23 22 27 27 H 0.96999 * 120.00158 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00619 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.46935 * 59.99358 * 12 10 9 30 30 H 1.08998 * 109.46730 * 300.00061 * 12 10 9 31 31 H 1.09000 * 109.50735 * 63.27610 * 18 16 14 32 32 H 1.09002 * 109.54467 * 303.17662 * 18 16 14 33 33 H 1.09004 * 109.50989 * 181.39292 * 20 19 18 34 34 H 1.09005 * 109.51114 * 61.26252 * 20 19 18 35 35 H 1.09001 * 109.50988 * 296.91769 * 21 20 19 36 36 H 1.09001 * 109.50871 * 176.78302 * 21 20 19 37 37 H 1.08998 * 109.47585 * 190.29033 * 23 22 16 38 38 H 1.08994 * 109.47657 * 70.28130 * 23 22 16 39 39 H 1.09004 * 109.47162 * 186.10404 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0022 13 8 2.1871 -5.9666 0.0027 14 6 1.6741 -7.2069 0.0037 15 8 0.4763 -7.3652 0.0038 16 6 2.5921 -8.4021 0.0037 17 1 3.5048 -8.1607 0.5485 18 6 2.9418 -8.7781 -1.4386 19 8 3.7515 -9.9570 -1.4356 20 6 3.1270 -11.0828 -0.8130 21 6 2.7792 -10.7302 0.6357 22 7 1.9196 -9.5377 0.6514 23 6 1.5155 -9.1981 2.0222 24 6 2.7034 -8.5859 2.7672 25 9 3.0346 -7.3568 2.1870 26 9 3.8003 -9.4504 2.6862 27 1 -0.4850 0.8400 -0.0004 28 1 0.3533 -2.3907 0.0005 29 1 0.6173 -4.9213 -0.8880 30 1 0.6167 -4.9201 0.8919 31 1 3.4911 -7.9603 -1.9049 32 1 2.0258 -8.9671 -1.9985 33 1 3.8104 -11.9319 -0.8269 34 1 2.2161 -11.3391 -1.3540 35 1 3.6950 -10.5261 1.1905 36 1 2.2518 -11.5652 1.0970 37 1 1.1886 -10.1005 2.5388 38 1 0.6963 -8.4797 1.9922 39 1 2.4371 -8.4340 3.8133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786944375.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:58 Heat of formation + Delta-G solvation = -235.062653 kcal Electronic energy + Delta-G solvation = -28768.629617 eV Core-core repulsion = 24155.572229 eV Total energy + Delta-G solvation = -4613.057389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.49966 -47.35766 -40.82465 -39.36075 -38.07617 -36.49210 -35.76234 -33.99237 -31.98491 -31.36131 -30.74013 -28.44552 -26.58515 -25.29085 -24.44851 -22.99405 -21.96024 -20.28794 -19.56724 -18.28892 -18.06473 -17.85563 -17.73852 -16.99427 -16.92491 -16.33748 -16.01993 -15.87352 -15.55061 -15.28919 -14.68148 -14.48606 -14.39633 -14.11190 -13.98159 -13.83257 -13.56547 -13.53957 -12.92478 -12.72052 -12.56624 -12.22394 -12.05152 -12.03685 -11.81050 -11.61874 -11.42465 -11.14763 -11.00515 -10.43690 -10.38824 -10.38439 -10.29338 -9.97042 -9.60886 -8.68315 -8.50883 -8.07479 -6.49525 -3.91351 2.17945 2.49039 3.12178 3.14320 3.24274 3.31917 3.47352 3.65947 3.74636 3.90175 4.10233 4.12668 4.32899 4.47018 4.57560 4.65426 4.82281 4.85802 5.00626 5.07574 5.09710 5.15380 5.27802 5.29726 5.39148 5.51512 5.54487 5.64872 5.68963 6.05261 6.22815 6.35783 6.58964 6.78954 7.48726 7.84543 7.97266 8.49490 9.08083 9.40159 9.90299 10.67865 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.024688 B = 0.002980 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.872173 B = 9392.634041 C = 9660.840489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.301 4.301 8 H 0.107 0.893 9 N -0.554 5.554 10 C 0.439 3.561 11 O -0.573 6.573 12 C 0.061 3.939 13 O -0.316 6.316 14 C 0.471 3.529 15 O -0.498 6.498 16 C 0.041 3.959 17 H 0.106 0.894 18 C 0.076 3.924 19 O -0.372 6.372 20 C 0.060 3.940 21 C -0.005 4.005 22 N -0.509 5.509 23 C 0.000 4.000 24 C 0.214 3.786 25 F -0.188 7.188 26 F -0.200 7.200 27 H 0.273 0.727 28 H 0.394 0.606 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 -22.233 3.660 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.430 4.430 8 H 0.124 0.876 9 N -0.191 5.191 10 C 0.224 3.776 11 O -0.456 6.456 12 C -0.017 4.017 13 O -0.230 6.230 14 C 0.312 3.688 15 O -0.386 6.386 16 C -0.069 4.069 17 H 0.124 0.876 18 C -0.001 4.001 19 O -0.290 6.290 20 C -0.017 4.017 21 C -0.132 4.132 22 N -0.234 5.234 23 C -0.130 4.130 24 C 0.159 3.841 25 F -0.169 7.169 26 F -0.181 7.181 27 H 0.083 0.917 28 H 0.228 0.772 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.119 -22.180 3.270 22.448 hybrid contribution -0.034 1.124 0.717 1.334 sum 1.085 -21.056 3.987 21.458 Atomic orbital electron populations 1.69621 1.05995 1.28345 1.49888 1.25304 0.95684 0.99846 0.96952 0.85748 0.79743 0.80770 0.77788 1.19074 1.20625 1.20645 1.19780 0.93514 0.81746 1.47983 0.87560 1.41707 1.09335 1.04079 1.64018 1.19310 0.88352 0.84039 0.85915 1.90573 1.13372 1.86738 1.54961 1.22760 0.90865 0.84643 1.03385 1.86567 1.40135 1.13816 1.82469 1.22946 0.88143 0.84630 0.73048 1.90641 1.16281 1.86681 1.44950 1.22310 0.96606 0.87668 1.00304 0.87635 1.22606 0.96685 0.88836 0.91979 1.88060 1.42637 1.19341 1.78999 1.22742 0.98620 0.89057 0.91303 1.23365 0.97954 0.92493 0.99361 1.62066 1.41638 1.03708 1.15998 1.23629 0.96482 1.04208 0.88649 1.23026 0.84734 0.75708 1.00668 1.93077 1.93304 1.44473 1.86019 1.92866 1.57987 1.70041 1.97240 0.91708 0.77203 0.89530 0.89664 0.86726 0.91312 0.87883 0.92009 0.90317 0.88810 0.86817 0.86328 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 8 H 0.11 3.08 7.16 -52.49 -0.38 2.71 16 9 N -0.55 -14.03 5.29 -10.96 -0.06 -14.09 16 10 C 0.44 10.66 7.86 -10.98 -0.09 10.57 16 11 O -0.57 -16.08 16.08 -14.11 -0.23 -16.31 16 12 C 0.06 1.17 5.94 36.01 0.21 1.39 16 13 O -0.32 -6.01 9.22 -45.88 -0.42 -6.43 16 14 C 0.47 7.58 4.86 36.00 0.17 7.76 16 15 O -0.50 -8.50 15.10 -18.75 -0.28 -8.78 16 16 C 0.04 0.54 1.86 -68.75 -0.13 0.41 16 17 H 0.11 1.52 5.49 -51.93 -0.29 1.23 16 18 C 0.08 0.94 6.27 37.21 0.23 1.17 16 19 O -0.37 -4.38 10.83 -35.23 -0.38 -4.76 16 20 C 0.06 0.52 7.01 37.21 0.26 0.78 16 21 C 0.00 -0.04 5.25 -3.71 -0.02 -0.06 16 22 N -0.51 -5.57 4.48 -227.73 -1.02 -6.60 16 23 C 0.00 0.00 5.46 -3.83 -0.02 -0.02 16 24 C 0.21 2.08 5.14 37.16 0.19 2.27 16 25 F -0.19 -2.67 12.36 2.25 0.03 -2.64 16 26 F -0.20 -2.07 13.84 2.25 0.03 -2.04 16 27 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 29 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 30 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 31 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.74 5.26 -51.93 -0.27 0.47 16 36 H 0.09 0.59 8.05 -51.93 -0.42 0.17 16 37 H 0.11 0.68 7.96 -51.93 -0.41 0.26 16 38 H 0.12 1.26 6.56 -51.93 -0.34 0.92 16 39 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -33.82 329.61 -5.61 -39.43 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -4.52 Total: 8.56 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 0.58 Total: 16.33 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -0.35 Total: -44.04 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -1.31 Total: -36.28 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.06 Total: -4.68 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.82 -5.61 -39.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786944375.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.634 kcal (2) G-P(sol) polarization free energy of solvation -33.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds