Wall clock time and date at job start Fri Apr 10 2020 18:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99928 * 2 1 4 4 C 1.50697 * 109.46826 * 66.04966 * 3 2 1 5 5 H 1.08001 * 120.00023 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99727 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00578 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99755 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47206 * 59.99927 * 8 6 4 10 10 H 1.48500 * 109.47176 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47280 * 300.00147 * 8 6 4 12 12 C 1.46900 * 111.00093 * 236.05178 * 2 1 3 13 13 C 1.50708 * 109.46807 * 293.95212 * 12 2 1 14 14 O 1.21297 * 120.00186 * 359.97438 * 13 12 2 15 15 N 1.34778 * 119.99844 * 179.97438 * 13 12 2 16 16 C 1.39362 * 119.99864 * 180.02562 * 15 13 12 17 17 S 1.75848 * 125.31900 * 0.13325 * 16 15 13 18 18 C 1.75749 * 91.26301 * 180.18711 * 17 16 15 19 19 C 1.32880 * 110.26017 * 359.82608 * 18 17 16 20 20 C 1.36317 * 125.31330 * 179.97438 * 16 15 13 21 21 C 1.48252 * 122.98210 * 0.02562 * 20 16 15 22 22 N 1.33752 * 126.31670 * 359.72617 * 21 20 16 23 23 N 1.28564 * 109.84394 * 179.75583 * 22 21 20 24 24 N 1.28918 * 109.74397 * 0.41765 * 23 22 21 25 25 H 0.97001 * 126.42744 * 179.86831 * 24 23 22 26 26 N 1.32065 * 126.32507 * 179.73113 * 21 20 16 27 27 H 1.09005 * 109.47012 * 183.95149 * 1 2 3 28 28 H 1.08996 * 109.46943 * 303.94814 * 1 2 3 29 29 H 1.08997 * 109.47435 * 63.94952 * 1 2 3 30 30 H 1.09002 * 109.47418 * 186.04733 * 3 2 1 31 31 H 1.08995 * 109.47715 * 306.04990 * 3 2 1 32 32 H 0.96995 * 120.00774 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47775 * 173.95277 * 12 2 1 34 34 H 1.09004 * 109.47528 * 53.95017 * 12 2 1 35 35 H 0.97002 * 119.99710 * 359.97438 * 15 13 12 36 36 H 1.08001 * 124.86901 * 179.84554 * 18 17 16 37 37 H 1.08000 * 122.46355 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5113 2.0485 6 6 2.0277 3.3491 1.5290 7 7 2.7137 4.0013 0.6159 8 14 1.5827 4.1868 3.1383 9 1 2.1735 3.4291 4.2706 10 1 2.1150 5.5731 3.1384 11 1 0.1054 4.2242 3.2849 12 6 1.9955 -0.7659 -1.1376 13 6 1.6369 -2.2204 -0.9730 14 8 1.0054 -2.5833 -0.0030 15 7 2.0180 -3.1179 -1.9034 16 6 1.6860 -4.4628 -1.7514 17 16 0.7752 -5.1396 -0.4080 18 6 0.8919 -6.7544 -1.0917 19 6 1.5669 -6.7220 -2.2359 20 6 2.0141 -5.4587 -2.6225 21 6 2.7838 -5.2213 -3.8671 22 7 3.2446 -4.0430 -4.3009 23 7 3.8723 -4.2020 -5.4115 24 7 3.8468 -5.4451 -5.7522 25 1 4.2442 -5.8326 -6.5476 26 7 3.1409 -6.1341 -4.7522 27 1 -0.3633 -1.0253 0.0708 28 1 -0.3633 0.5739 0.8525 29 1 -0.3634 0.4513 -0.9232 30 1 3.0797 1.3445 -0.1083 31 1 1.5611 1.9274 -0.8308 32 1 2.9882 4.9173 0.7779 33 1 3.0797 -0.6610 -1.1758 34 1 1.5611 -0.3871 -2.0629 35 1 2.5227 -2.8275 -2.6793 36 1 0.4745 -7.6452 -0.6461 37 1 1.7546 -7.6085 -2.8235 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821598257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:30 Heat of formation + Delta-G solvation = 139.328248 kcal Electronic energy + Delta-G solvation = -23803.382066 eV Core-core repulsion = 20132.294293 eV Total energy + Delta-G solvation = -3671.087772 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.095 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.47075 -40.23174 -38.17937 -36.13957 -34.64967 -33.72283 -33.02611 -32.53158 -29.58840 -27.94457 -26.92736 -25.10033 -24.82771 -23.95695 -22.39507 -21.35425 -20.46223 -19.69758 -19.13057 -17.97949 -16.99463 -16.82851 -16.24355 -15.71829 -15.66824 -14.99440 -14.71323 -14.50981 -14.23097 -13.89130 -13.82221 -13.54256 -13.27119 -12.60735 -12.48170 -12.28196 -11.88604 -11.62668 -11.30266 -11.22798 -11.15692 -11.12529 -11.08474 -10.96541 -10.80900 -10.68811 -10.47599 -9.99386 -9.61947 -9.20471 -8.51990 -8.44170 -8.05526 -7.33037 -6.03643 -4.04620 0.38207 0.83923 1.12566 1.69582 1.81079 1.98500 2.50439 2.84609 2.98303 3.35498 3.38910 3.42885 3.52902 3.95683 4.42936 4.80343 4.89503 4.96501 5.04413 5.19946 5.31721 5.32637 5.61119 5.68996 5.71859 5.87397 6.13018 6.18198 6.19089 6.28505 6.35992 6.85017 7.09150 7.21830 7.26268 7.75586 7.81067 7.94661 8.05747 8.13503 8.47997 9.02670 9.59495 11.07373 Molecular weight = 322.10amu Principal moments of inertia in cm(-1) A = 0.018739 B = 0.002879 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.887736 B = 9724.846753 C =11034.879482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.523 5.523 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.065 0.935 6 C 0.056 3.944 7 N -0.900 5.900 8 Si 0.900 3.100 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.042 3.958 13 C 0.507 3.493 14 O -0.480 6.480 15 N -0.634 5.634 16 C 0.107 3.893 17 S 0.268 5.732 18 C -0.285 4.285 19 C -0.078 4.078 20 C -0.129 4.129 21 C 0.288 3.712 22 N -0.320 5.320 23 N 0.019 4.981 24 N -0.298 5.298 25 H 0.470 0.530 26 N -0.296 5.296 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.007 0.993 30 H 0.032 0.968 31 H -0.005 1.005 32 H 0.262 0.738 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.429 0.571 36 H 0.168 0.832 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.282 -22.428 -12.130 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.248 5.248 3 C 0.069 3.931 4 C -0.546 4.546 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.089 4.089 13 C 0.295 3.705 14 O -0.352 6.352 15 N -0.282 5.282 16 C -0.116 4.116 17 S 0.527 5.473 18 C -0.421 4.421 19 C -0.108 4.108 20 C -0.149 4.149 21 C 0.006 3.994 22 N -0.199 5.199 23 N 0.023 4.977 24 N -0.146 5.146 25 H 0.324 0.676 26 N -0.140 5.140 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.026 0.974 30 H 0.050 0.950 31 H 0.012 0.988 32 H 0.072 0.928 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.272 0.728 36 H 0.185 0.815 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.833 -21.724 -10.147 23.991 hybrid contribution 0.667 -0.109 -2.060 2.168 sum -0.166 -21.833 -12.207 25.015 Atomic orbital electron populations 1.22398 0.87882 1.01146 1.00366 1.61911 1.07968 1.17606 1.37271 1.19804 0.95485 0.80700 0.97125 1.21097 1.34978 0.96902 1.01597 0.91671 1.24975 0.95236 0.97278 0.97065 1.69936 1.38277 1.11560 1.34157 0.86529 0.78741 0.78243 0.83726 1.20094 1.21384 1.20241 1.21919 1.02794 0.88188 0.96048 1.21712 0.78404 0.89112 0.81291 1.90592 1.36946 1.78987 1.28725 1.43650 1.54482 1.03137 1.26898 1.22793 1.00938 0.87880 0.99992 1.85546 1.49377 0.95038 1.17329 1.25852 1.10191 1.03955 1.02129 1.19436 0.98632 0.95955 0.96780 1.16055 1.11694 0.93349 0.93765 1.23044 0.95514 0.86223 0.94661 1.75115 1.14836 1.24190 1.05733 1.78302 1.10850 1.01262 1.07267 1.50980 1.38888 1.03739 1.20959 0.67554 1.78924 1.15941 1.19254 0.99890 0.91847 0.90414 0.97405 0.94978 0.98754 0.92826 0.87487 0.92010 0.72811 0.81482 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.03 60.06 0.54 1.16 16 2 N -0.52 -11.32 4.49 -245.82 -1.10 -12.42 16 3 C 0.19 4.93 4.72 -4.98 -0.02 4.91 16 4 C -0.51 -14.20 8.46 -34.44 -0.29 -14.49 16 5 H 0.07 1.83 7.12 -52.49 -0.37 1.45 16 6 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.04 0.72 5.45 -4.97 -0.03 0.69 16 13 C 0.51 8.11 7.52 -10.98 -0.08 8.03 16 14 O -0.48 -8.69 11.84 5.54 0.07 -8.62 16 15 N -0.63 -8.63 5.39 -10.36 -0.06 -8.68 16 16 C 0.11 1.40 7.18 -14.81 -0.11 1.29 16 17 S 0.27 3.24 20.44 -107.50 -2.20 1.04 16 18 C -0.29 -2.71 11.16 28.88 0.32 -2.39 16 19 C -0.08 -0.79 9.93 -40.97 -0.41 -1.20 16 20 C -0.13 -1.55 5.85 -106.01 -0.62 -2.17 16 21 C 0.29 3.45 8.01 -156.41 -1.25 2.20 16 22 N -0.32 -3.89 10.03 32.10 0.32 -3.56 16 23 N 0.02 0.20 13.42 60.35 0.81 1.01 16 24 N -0.30 -2.29 8.44 60.35 0.51 -1.78 16 25 H 0.47 1.36 8.96 -331.91 -2.98 -1.61 16 26 N -0.30 -3.08 12.81 32.12 0.41 -2.67 16 27 H 0.06 1.21 5.88 -51.93 -0.31 0.90 16 28 H 0.08 1.69 6.76 -51.93 -0.35 1.33 16 29 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.03 0.86 7.93 -51.93 -0.41 0.44 16 31 H -0.01 -0.14 8.12 -51.93 -0.42 -0.56 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.11 1.69 7.93 -51.93 -0.41 1.28 16 34 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 35 H 0.43 5.38 6.33 -40.82 -0.26 5.12 16 36 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 333.50 15.07 5.03 5.03 Total: -1.00 -33.02 333.50 -8.87 -41.89 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.33 Total: -1.68 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.04 Total: -0.50 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 1.63 Total: -53.80 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.07 Total: -8.62 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.20 Total: 1.04 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.02 -8.87 -41.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821598257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.220 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds