Wall clock time and date at job start Fri Apr 10 2020 18:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99856 * 2 1 4 4 C 1.50695 * 109.47109 * 85.00004 * 3 2 1 5 5 H 1.07995 * 120.00496 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99572 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00327 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99951 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 59.99744 * 8 6 4 10 10 H 1.48503 * 109.47261 * 299.99924 * 8 6 4 11 11 H 1.48500 * 109.47454 * 179.97438 * 8 6 4 12 12 S 1.65598 * 119.99759 * 179.97438 * 2 1 3 13 13 O 1.42097 * 106.40520 * 23.54043 * 12 2 1 14 14 O 1.42103 * 106.39821 * 156.46034 * 12 2 1 15 15 N 1.65604 * 107.21837 * 269.99702 * 12 2 1 16 16 C 1.47152 * 120.97710 * 90.00257 * 15 12 2 17 17 C 1.53295 * 108.38071 * 129.44203 * 16 15 12 18 18 O 1.42962 * 109.22576 * 52.30104 * 17 16 15 19 19 C 1.42966 * 114.16673 * 297.42120 * 18 17 16 20 20 H 1.09003 * 109.50743 * 302.60149 * 19 18 17 21 21 C 1.52994 * 109.51671 * 182.50332 * 19 18 17 22 22 C 1.50706 * 109.47106 * 64.99743 * 21 19 18 23 23 O 1.20819 * 119.99919 * 0.02562 * 22 21 19 24 24 O 1.34231 * 120.00004 * 180.02562 * 22 21 19 25 25 C 1.47142 * 120.98125 * 269.72072 * 15 12 2 26 26 H 1.08994 * 109.47430 * 90.00039 * 1 2 3 27 27 H 1.09004 * 109.47018 * 210.00645 * 1 2 3 28 28 H 1.09003 * 109.47415 * 330.00188 * 1 2 3 29 29 H 1.09002 * 109.47129 * 324.99837 * 3 2 1 30 30 H 1.08998 * 109.46845 * 205.00644 * 3 2 1 31 31 H 0.97006 * 119.99995 * 359.97438 * 7 6 4 32 32 H 1.08990 * 109.67969 * 249.16125 * 16 15 12 33 33 H 1.08996 * 109.68508 * 9.72412 * 16 15 12 34 34 H 1.09001 * 109.51135 * 172.22024 * 17 16 15 35 35 H 1.09003 * 109.51471 * 292.32809 * 17 16 15 36 36 H 1.08998 * 109.47692 * 184.99943 * 21 19 18 37 37 H 1.08997 * 109.47117 * 304.99929 * 21 19 18 38 38 H 0.96691 * 117.00290 * 180.02562 * 24 22 21 39 39 H 1.09005 * 109.68366 * 350.28202 * 25 15 12 40 40 H 1.09000 * 109.68307 * 110.83828 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 1.4154 5 1 1.9282 1.1939 2.2331 6 6 3.0006 2.9504 1.6663 7 7 3.5033 3.6469 0.6705 8 14 3.1797 3.5661 3.4208 9 1 3.9253 2.5636 4.2236 10 1 1.8335 3.7723 4.0129 11 1 3.9231 4.8516 3.4209 12 16 2.2930 -1.4342 0.0006 13 8 1.4113 -2.4068 -0.5433 14 8 3.5759 -1.1570 -0.5439 15 7 2.5381 -1.8580 1.5827 16 6 1.5576 -2.6826 2.3065 17 6 2.3013 -3.8479 2.9690 18 8 3.3907 -3.3341 3.7392 19 6 4.3803 -2.6482 2.9683 20 1 4.7709 -3.3160 2.2004 21 6 5.5210 -2.1997 3.8839 22 6 6.2215 -3.4110 4.4439 23 8 5.8470 -4.5191 4.1413 24 8 7.2614 -3.2586 5.2788 25 6 3.7457 -1.4262 2.3040 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5140 28 1 -0.3634 0.8900 0.5138 29 1 1.6501 2.0043 -0.5895 30 1 3.1857 1.1177 -0.4344 31 1 3.4107 3.3270 -0.2406 32 1 1.0641 -2.0809 3.0696 33 1 0.8165 -3.0701 1.6075 34 1 1.6184 -4.3915 3.6219 35 1 2.6830 -4.5202 2.2005 36 1 6.2309 -1.6009 3.3134 37 1 5.1173 -1.6030 4.7018 38 1 7.6788 -4.0647 5.6118 39 1 4.4528 -0.9820 1.6034 40 1 3.4761 -0.6958 3.0669 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830727047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:32 Heat of formation + Delta-G solvation = -207.729279 kcal Electronic energy + Delta-G solvation = -27224.189689 eV Core-core repulsion = 23166.157951 eV Total energy + Delta-G solvation = -4058.031738 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.43278 -39.09486 -36.90981 -36.19277 -35.73155 -35.41014 -34.60255 -33.16120 -32.72069 -29.15828 -27.55454 -26.40964 -24.90809 -23.79582 -22.52769 -21.79505 -20.64247 -18.69263 -18.13441 -17.59902 -17.24503 -16.92035 -16.72899 -16.54856 -15.74296 -15.48891 -14.99020 -14.81921 -14.64766 -14.18187 -13.84946 -13.77590 -13.35940 -13.00437 -12.67356 -12.54389 -12.42119 -12.32067 -12.00843 -11.87568 -11.84737 -11.56407 -11.45631 -11.39497 -11.22486 -11.16622 -10.70300 -10.67529 -10.62972 -10.42624 -10.19538 -10.08003 -9.46791 -8.66677 -8.50655 -8.01972 -6.50621 -4.25794 1.04260 2.17553 2.89996 3.24697 3.33074 3.34948 3.53813 3.64804 3.92371 4.40719 4.57026 4.71110 4.87266 4.92905 5.04312 5.15137 5.22737 5.26166 5.35700 5.41170 5.46962 5.51548 5.57766 5.68947 5.87565 5.92974 6.07230 6.16772 6.23102 6.37350 6.40569 6.64609 6.93751 7.13947 7.14768 7.37999 7.82485 7.88789 8.30621 8.66595 9.46136 10.86527 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.005926 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.186375 B = 4723.715947 C = 6430.437431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.992 5.992 3 C 0.234 3.766 4 C -0.619 4.619 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.904 5.904 8 Si 1.066 2.934 9 H -0.285 1.285 10 H -0.288 1.288 11 H -0.282 1.282 12 S 2.788 3.212 13 O -0.995 6.995 14 O -0.976 6.976 15 N -1.004 6.004 16 C 0.084 3.916 17 C 0.058 3.942 18 O -0.369 6.369 19 C 0.091 3.909 20 H 0.071 0.929 21 C -0.109 4.109 22 C 0.482 3.518 23 O -0.506 6.506 24 O -0.520 6.520 25 C 0.099 3.901 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.027 0.973 30 H 0.040 0.960 31 H 0.270 0.730 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.408 0.592 39 H 0.107 0.893 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 -11.802 7.080 13.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.833 5.833 3 C 0.111 3.889 4 C -0.658 4.658 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.539 5.539 8 Si 0.894 3.106 9 H -0.211 1.211 10 H -0.215 1.215 11 H -0.207 1.207 12 S 2.798 3.202 13 O -0.979 6.979 14 O -0.960 6.960 15 N -0.843 5.843 16 C -0.042 4.042 17 C -0.021 4.021 18 O -0.287 6.287 19 C 0.031 3.969 20 H 0.089 0.911 21 C -0.147 4.147 22 C 0.324 3.676 23 O -0.393 6.393 24 O -0.332 6.332 25 C -0.027 4.027 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.266 0.734 39 H 0.125 0.875 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.885 -10.992 7.151 13.144 hybrid contribution -0.675 -1.421 -0.551 1.667 sum 0.210 -12.413 6.600 14.061 Atomic orbital electron populations 1.21228 0.79857 1.02232 1.00672 1.57518 1.14297 1.23039 1.88494 1.19290 0.91583 0.79753 0.98271 1.22328 1.40866 1.10159 0.92481 0.92467 1.25780 0.93190 0.93531 1.05751 1.70794 1.42536 1.39951 1.00660 0.83583 0.76516 0.76585 0.73943 1.21149 1.21482 1.20673 1.01709 0.73113 0.72644 0.72779 1.93532 1.67359 1.60238 1.76738 1.93561 1.40811 1.85301 1.76327 1.58219 1.28961 1.65225 1.31865 1.22089 0.91519 0.92982 0.97630 1.22843 0.88855 0.94513 0.95855 1.87917 1.33200 1.73653 1.33974 1.22124 0.87893 0.93995 0.92878 0.91097 1.21385 0.96717 0.94808 1.01756 1.23319 0.77307 0.91379 0.75568 1.90730 1.63566 1.27708 1.57313 1.84548 1.45604 1.42961 1.60075 1.21916 0.86743 0.95726 0.98323 0.93671 0.92808 0.90732 0.95474 0.94178 0.91938 0.90596 0.88461 0.87894 0.92694 0.85465 0.86155 0.73388 0.87491 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.81 10.31 59.85 0.62 2.42 16 2 N -0.99 -20.17 3.23 -123.05 -0.40 -20.57 16 3 C 0.23 5.60 4.72 -5.20 -0.02 5.57 16 4 C -0.62 -15.61 9.38 -34.44 -0.32 -15.93 16 5 H 0.06 1.41 7.81 -52.49 -0.41 1.00 16 6 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 7 N -0.90 -25.68 13.65 55.43 0.76 -24.92 16 8 Si 1.07 23.18 29.90 -169.99 -5.08 18.10 16 9 H -0.29 -5.75 7.11 56.52 0.40 -5.35 16 10 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 S 2.79 54.66 6.13 -107.50 -0.66 54.00 16 13 O -0.99 -19.87 15.83 -57.17 -0.91 -20.77 16 14 O -0.98 -21.88 15.31 -57.17 -0.88 -22.75 16 15 N -1.00 -16.74 3.40 -113.31 -0.39 -17.12 16 16 C 0.08 1.14 6.71 -3.53 -0.02 1.12 16 17 C 0.06 0.73 6.98 37.31 0.26 0.99 16 18 O -0.37 -5.33 9.62 -49.61 -0.48 -5.81 16 19 C 0.09 1.27 2.31 -26.80 -0.06 1.21 16 20 H 0.07 1.04 7.96 -51.93 -0.41 0.62 16 21 C -0.11 -1.23 5.53 -27.88 -0.15 -1.39 16 22 C 0.48 5.77 8.21 36.01 0.30 6.07 16 23 O -0.51 -7.64 16.18 -24.03 -0.39 -8.03 16 24 O -0.52 -4.79 13.42 -39.26 -0.53 -5.32 16 25 C 0.10 1.57 5.98 -3.75 -0.02 1.55 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 28 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 29 H 0.03 0.67 7.98 -51.93 -0.41 0.26 16 30 H 0.04 1.04 6.78 -51.93 -0.35 0.69 16 31 H 0.27 7.68 7.22 -40.82 -0.29 7.38 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.10 1.25 6.94 -51.93 -0.36 0.89 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.41 2.04 9.10 45.56 0.41 2.45 16 39 H 0.11 1.81 6.94 -51.93 -0.36 1.45 16 40 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -34.47 347.17 -8.01 -42.49 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.77 Total: 3.35 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 0.47 Total: 2.13 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.03 Total: -62.61 kcal Atomic # 8 Polarization: -59.51 SS G_CDS: -3.17 Total: -62.68 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.08 Total: 18.10 kcal Atomic # 16 Polarization: 54.66 SS G_CDS: -0.66 Total: 54.00 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.47 -8.01 -42.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830727047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.243 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds