Wall clock time and date at job start Fri Apr 10 2020 18:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99856 * 2 1 4 4 C 1.50695 * 109.47109 * 85.00004 * 3 2 1 5 5 H 1.07995 * 120.00496 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99572 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00327 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99951 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 59.99744 * 8 6 4 10 10 H 1.48503 * 109.47261 * 299.99924 * 8 6 4 11 11 H 1.48500 * 109.47454 * 179.97438 * 8 6 4 12 12 S 1.65598 * 119.99759 * 179.97438 * 2 1 3 13 13 O 1.42097 * 106.40520 * 23.54043 * 12 2 1 14 14 O 1.42103 * 106.39821 * 156.46034 * 12 2 1 15 15 N 1.65604 * 107.21837 * 269.99702 * 12 2 1 16 16 C 1.47152 * 120.97710 * 90.00257 * 15 12 2 17 17 C 1.53295 * 108.38071 * 129.44203 * 16 15 12 18 18 O 1.42962 * 109.22576 * 52.30104 * 17 16 15 19 19 C 1.42966 * 114.16673 * 297.42120 * 18 17 16 20 20 H 1.09003 * 109.50743 * 302.60149 * 19 18 17 21 21 C 1.52994 * 109.51671 * 182.50332 * 19 18 17 22 22 C 1.50706 * 109.47106 * 64.99743 * 21 19 18 23 23 O 1.20819 * 119.99919 * 0.02562 * 22 21 19 24 24 O 1.34231 * 120.00004 * 180.02562 * 22 21 19 25 25 C 1.47142 * 120.98125 * 269.72072 * 15 12 2 26 26 H 1.08994 * 109.47430 * 90.00039 * 1 2 3 27 27 H 1.09004 * 109.47018 * 210.00645 * 1 2 3 28 28 H 1.09003 * 109.47415 * 330.00188 * 1 2 3 29 29 H 1.09002 * 109.47129 * 324.99837 * 3 2 1 30 30 H 1.08998 * 109.46845 * 205.00644 * 3 2 1 31 31 H 0.97006 * 119.99995 * 359.97438 * 7 6 4 32 32 H 1.08990 * 109.67969 * 249.16125 * 16 15 12 33 33 H 1.08996 * 109.68508 * 9.72412 * 16 15 12 34 34 H 1.09001 * 109.51135 * 172.22024 * 17 16 15 35 35 H 1.09003 * 109.51471 * 292.32809 * 17 16 15 36 36 H 1.08998 * 109.47692 * 184.99943 * 21 19 18 37 37 H 1.08997 * 109.47117 * 304.99929 * 21 19 18 38 38 H 0.96691 * 117.00290 * 180.02562 * 24 22 21 39 39 H 1.09005 * 109.68366 * 350.28202 * 25 15 12 40 40 H 1.09000 * 109.68307 * 110.83828 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 1.4154 5 1 1.9282 1.1939 2.2331 6 6 3.0006 2.9504 1.6663 7 7 3.5033 3.6469 0.6705 8 14 3.1797 3.5661 3.4208 9 1 3.9253 2.5636 4.2236 10 1 1.8335 3.7723 4.0129 11 1 3.9231 4.8516 3.4209 12 16 2.2930 -1.4342 0.0006 13 8 1.4113 -2.4068 -0.5433 14 8 3.5759 -1.1570 -0.5439 15 7 2.5381 -1.8580 1.5827 16 6 1.5576 -2.6826 2.3065 17 6 2.3013 -3.8479 2.9690 18 8 3.3907 -3.3341 3.7392 19 6 4.3803 -2.6482 2.9683 20 1 4.7709 -3.3160 2.2004 21 6 5.5210 -2.1997 3.8839 22 6 6.2215 -3.4110 4.4439 23 8 5.8470 -4.5191 4.1413 24 8 7.2614 -3.2586 5.2788 25 6 3.7457 -1.4262 2.3040 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5140 28 1 -0.3634 0.8900 0.5138 29 1 1.6501 2.0043 -0.5895 30 1 3.1857 1.1177 -0.4344 31 1 3.4107 3.3270 -0.2406 32 1 1.0641 -2.0809 3.0696 33 1 0.8165 -3.0701 1.6075 34 1 1.6184 -4.3915 3.6219 35 1 2.6830 -4.5202 2.2005 36 1 6.2309 -1.6009 3.3134 37 1 5.1173 -1.6030 4.7018 38 1 7.6788 -4.0647 5.6118 39 1 4.4528 -0.9820 1.6034 40 1 3.4761 -0.6958 3.0669 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830727047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:32 Heat of formation + Delta-G solvation = -234.779468 kcal Electronic energy + Delta-G solvation = -27225.362673 eV Core-core repulsion = 23166.157951 eV Total energy + Delta-G solvation = -4059.204722 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38098 -40.16108 -38.53901 -37.44001 -37.06985 -37.04867 -35.82199 -34.64737 -34.18545 -30.19903 -29.32170 -27.58726 -26.60484 -24.85883 -24.39590 -22.85214 -21.66663 -20.16537 -19.12194 -19.04274 -18.99576 -18.30507 -17.98732 -17.63903 -17.13840 -16.50065 -16.21050 -16.08223 -15.85264 -15.57720 -15.49355 -15.20293 -14.90251 -14.23422 -14.02093 -13.91633 -13.75904 -13.50792 -13.49420 -13.33281 -13.21227 -13.12964 -12.95405 -12.73462 -12.46183 -12.35964 -12.33357 -12.28615 -11.89660 -11.67841 -11.51340 -11.28770 -11.23318 -10.51686 -9.93051 -9.72574 -8.58859 -6.35428 -0.49952 1.27387 1.60421 1.66642 1.75878 1.85458 2.11584 2.40085 2.62181 2.64915 3.17147 3.22812 3.63008 3.70967 3.75717 3.95421 4.02329 4.14848 4.25183 4.31923 4.48221 4.55309 4.57889 4.62713 4.66524 4.69291 4.81702 4.91138 4.94064 4.98846 5.04308 5.27549 5.39809 5.66143 5.73138 5.88768 6.09508 6.27759 6.55199 7.05031 7.45495 8.77470 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.005926 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.186375 B = 4723.715947 C = 6430.437431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.999 5.999 3 C 0.244 3.756 4 C -0.612 4.612 5 H 0.066 0.934 6 C -0.026 4.026 7 N -0.936 5.936 8 Si 1.108 2.892 9 H -0.256 1.256 10 H -0.273 1.273 11 H -0.292 1.292 12 S 2.798 3.202 13 O -0.999 6.999 14 O -1.011 7.011 15 N -1.004 6.004 16 C 0.079 3.921 17 C 0.055 3.945 18 O -0.376 6.376 19 C 0.096 3.904 20 H 0.059 0.941 21 C -0.111 4.111 22 C 0.490 3.510 23 O -0.543 6.543 24 O -0.512 6.512 25 C 0.098 3.902 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.013 0.987 30 H 0.014 0.986 31 H 0.256 0.744 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.135 0.865 35 H 0.049 0.951 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.427 0.573 39 H 0.090 0.910 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 -12.668 9.503 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.840 5.840 3 C 0.120 3.880 4 C -0.651 4.651 5 H 0.084 0.916 6 C -0.225 4.225 7 N -0.573 5.573 8 Si 0.929 3.071 9 H -0.181 1.181 10 H -0.199 1.199 11 H -0.218 1.218 12 S 2.808 3.192 13 O -0.983 6.983 14 O -0.995 6.995 15 N -0.844 5.844 16 C -0.046 4.046 17 C -0.023 4.023 18 O -0.295 6.295 19 C 0.036 3.964 20 H 0.077 0.923 21 C -0.148 4.148 22 C 0.333 3.667 23 O -0.433 6.433 24 O -0.326 6.326 25 C -0.028 4.028 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.153 0.847 35 H 0.067 0.933 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.289 0.711 39 H 0.108 0.892 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.277 -11.895 9.577 15.273 hybrid contribution -0.513 -1.231 -1.315 1.873 sum -0.237 -13.126 8.262 15.511 Atomic orbital electron populations 1.21473 0.77847 1.03506 1.01936 1.57481 1.15715 1.21775 1.89046 1.18922 0.90593 0.80981 0.97512 1.22550 1.39686 1.09778 0.93039 0.91577 1.27192 0.92643 0.94116 1.08577 1.70923 1.44815 1.41019 1.00506 0.83064 0.77440 0.76332 0.70220 1.18051 1.19864 1.21791 1.01239 0.72251 0.72318 0.73392 1.93517 1.67298 1.60023 1.77428 1.93512 1.42562 1.85714 1.77694 1.58017 1.29937 1.65354 1.31141 1.22378 0.91171 0.93124 0.97911 1.23033 0.88873 0.94081 0.96349 1.87918 1.33574 1.73582 1.34401 1.22041 0.88447 0.92688 0.93230 0.92330 1.21446 0.96303 0.94976 1.02089 1.23314 0.77346 0.90778 0.75219 1.90722 1.64840 1.29005 1.58766 1.84499 1.44628 1.44286 1.59157 1.21969 0.86260 0.96806 0.97796 0.92533 0.90139 0.90809 0.96926 0.96803 0.93492 0.89101 0.87609 0.84724 0.93270 0.83674 0.84549 0.71136 0.89215 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.17 10.31 127.77 1.32 4.49 16 2 N -1.00 -40.32 3.23 -543.23 -1.75 -42.07 16 3 C 0.24 11.91 4.72 85.63 0.40 12.31 16 4 C -0.61 -30.59 9.38 25.60 0.24 -30.35 16 5 H 0.07 3.14 7.81 -2.91 -0.02 3.12 16 6 C -0.03 -1.38 5.46 84.66 0.46 -0.91 16 7 N -0.94 -54.09 13.65 21.45 0.29 -53.80 16 8 Si 1.11 45.21 29.90 68.60 2.05 47.26 16 9 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 10 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 12 S 2.80 108.93 6.13 -56.49 -0.35 108.58 16 13 O -1.00 -38.85 15.83 -128.00 -2.03 -40.88 16 14 O -1.01 -46.41 15.31 -128.00 -1.96 -48.37 16 15 N -1.00 -32.27 3.40 -512.40 -1.74 -34.02 16 16 C 0.08 1.96 6.71 86.35 0.58 2.54 16 17 C 0.05 1.25 6.98 72.08 0.50 1.76 16 18 O -0.38 -10.09 9.62 -135.23 -1.30 -11.39 16 19 C 0.10 2.56 2.31 30.55 0.07 2.63 16 20 H 0.06 1.70 7.96 -2.39 -0.02 1.68 16 21 C -0.11 -2.28 5.53 29.85 0.16 -2.12 16 22 C 0.49 10.81 8.21 71.24 0.58 11.39 16 23 O -0.54 -15.75 16.18 27.04 0.44 -15.32 16 24 O -0.51 -8.14 13.42 -51.42 -0.69 -8.83 16 25 C 0.10 3.01 5.98 86.22 0.52 3.53 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.08 2.16 7.79 -2.39 -0.02 2.14 16 28 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 29 H 0.01 0.65 7.98 -2.39 -0.02 0.63 16 30 H 0.01 0.76 6.78 -2.39 -0.02 0.74 16 31 H 0.26 15.09 7.22 -92.70 -0.67 14.42 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.11 2.44 6.94 -2.39 -0.02 2.42 16 34 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.15 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.43 3.20 9.10 -74.06 -0.67 2.52 16 39 H 0.09 3.07 6.94 -2.38 -0.02 3.06 16 40 H 0.09 2.68 8.13 -2.39 -0.02 2.66 16 Total: -1.00 -74.14 347.17 -1.70 -75.84 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.49 Total: 17.71 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 4.84 Total: 5.27 kcal Atomic # 7 Polarization: -126.68 SS G_CDS: -3.20 Total: -129.88 kcal Atomic # 8 Polarization: -119.24 SS G_CDS: -5.54 Total: -124.78 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.05 Total: 47.26 kcal Atomic # 16 Polarization: 108.93 SS G_CDS: -0.35 Total: 108.58 kcal Total: -74.14 -1.70 -75.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830727047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.938 kcal (2) G-P(sol) polarization free energy of solvation -74.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds