Wall clock time and date at job start Fri Apr 10 2020 18:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47094 * 2 1 4 4 C 1.50697 * 109.46586 * 240.00281 * 2 1 3 5 5 H 1.07997 * 119.99887 * 239.99503 * 4 2 1 6 6 C 1.37878 * 120.00463 * 60.00251 * 4 2 1 7 7 N 1.31516 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00168 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46764 * 90.00467 * 8 6 4 10 10 H 1.48500 * 109.47043 * 209.99758 * 8 6 4 11 11 H 1.48493 * 109.47263 * 330.00404 * 8 6 4 12 12 N 1.46496 * 109.46865 * 120.00397 * 2 1 3 13 13 C 1.46496 * 120.00208 * 60.00364 * 12 2 1 14 14 S 1.65607 * 119.99795 * 239.99739 * 12 2 1 15 15 O 1.42093 * 106.40126 * 156.46465 * 14 12 2 16 16 O 1.42098 * 106.39999 * 23.54194 * 14 12 2 17 17 N 1.65603 * 107.21516 * 270.00377 * 14 12 2 18 18 C 1.47423 * 125.64885 * 269.97334 * 17 14 12 19 19 C 1.54904 * 104.83440 * 155.89335 * 18 17 14 20 20 H 1.08991 * 111.00901 * 278.93570 * 19 18 17 21 21 O 1.42902 * 111.00521 * 155.08369 * 19 18 17 22 22 C 1.55164 * 101.57813 * 37.01438 * 19 18 17 23 23 C 1.47021 * 125.64887 * 90.00209 * 17 14 12 24 24 H 1.09002 * 109.88291 * 300.45091 * 23 17 14 25 25 C 1.50697 * 110.01237 * 61.54454 * 23 17 14 26 26 O 1.20829 * 120.00001 * 359.60174 * 25 23 17 27 27 O 1.34230 * 120.00282 * 179.60090 * 25 23 17 28 28 H 1.08999 * 109.47334 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47262 * 299.99440 * 1 2 3 30 30 H 1.09004 * 109.47122 * 59.99646 * 1 2 3 31 31 H 0.96998 * 119.99946 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46864 * 269.99131 * 13 12 2 33 33 H 1.09002 * 109.47653 * 29.99167 * 13 12 2 34 34 H 1.09005 * 109.47308 * 149.99988 * 13 12 2 35 35 H 1.09002 * 110.36732 * 37.05166 * 18 17 14 36 36 H 1.09001 * 110.46177 * 274.78351 * 18 17 14 37 37 H 0.96693 * 114.00084 * 67.80194 * 21 19 18 38 38 H 1.09002 * 110.71540 * 206.13553 * 22 19 18 39 39 H 1.08995 * 110.87180 * 82.93022 * 22 19 18 40 40 H 0.96696 * 117.00099 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 1.3444 -2.1613 -4.4124 10 1 2.4870 -0.1401 -5.1121 11 1 3.6305 -1.7566 -3.7121 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4278 14 16 2.9704 0.1141 2.2862 15 8 2.8228 -0.5647 3.5258 16 8 2.6904 1.4972 2.1193 17 7 4.5437 -0.1043 1.8179 18 6 5.4237 -1.2056 2.2494 19 6 6.4852 -1.3278 1.1280 20 1 6.0978 -1.8977 0.2836 21 8 7.6916 -1.9100 1.6258 22 6 6.7033 0.1593 0.7423 23 6 5.2945 0.7682 0.9033 24 1 4.7950 0.8081 -0.0647 25 6 5.3990 2.1552 1.4833 26 8 4.8925 2.4029 2.5520 27 8 6.0549 3.1155 0.8128 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7081 1.1610 -3.4843 32 1 0.7376 -2.1445 1.9992 33 1 1.5294 -2.5969 0.4706 34 1 2.4629 -2.5820 1.9862 35 1 4.8564 -2.1322 2.3374 36 1 5.9010 -0.9624 3.1987 37 1 7.6043 -2.8388 1.8799 38 1 7.0444 0.2439 -0.2896 39 1 7.4099 0.6369 1.4210 40 1 6.0950 3.9894 1.2248 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844793203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:42 Heat of formation + Delta-G solvation = -227.273853 kcal Electronic energy + Delta-G solvation = -27960.056057 eV Core-core repulsion = 23901.176802 eV Total energy + Delta-G solvation = -4058.879254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.61269 -39.56233 -38.39394 -37.91679 -37.20356 -36.89063 -36.52087 -34.50010 -31.63802 -30.93655 -30.10303 -27.26150 -27.02083 -25.22588 -22.83770 -22.45679 -22.23505 -20.02657 -19.39893 -18.98178 -18.58947 -18.40932 -18.19591 -17.35519 -17.17273 -16.63496 -16.42170 -15.98301 -15.26907 -15.17503 -14.82656 -14.76872 -14.53873 -14.36781 -14.03141 -13.72039 -13.64287 -13.40848 -13.24330 -13.19452 -12.99777 -12.86378 -12.76632 -12.74442 -12.61979 -12.45374 -12.22101 -12.13187 -12.04311 -11.90051 -11.54805 -11.22929 -11.01667 -10.48152 -10.27537 -9.70320 -8.06170 -6.22223 -0.50419 1.14114 1.50565 1.52578 1.61401 1.77861 2.00048 2.48371 2.60115 3.04648 3.08517 3.22754 3.56281 3.68433 3.93229 4.08144 4.18326 4.22250 4.37765 4.49915 4.64976 4.73748 4.75198 4.78520 4.90133 4.94619 5.00880 5.06841 5.12339 5.18833 5.24553 5.56228 5.61589 5.70412 5.84361 6.09167 6.28778 6.87606 6.90542 6.93251 7.48253 8.98604 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.011583 B = 0.006431 C = 0.005829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.750126 B = 4353.203495 C = 4802.621092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.272 3.728 3 H 0.021 0.979 4 C -0.527 4.527 5 H 0.077 0.923 6 C 0.017 3.983 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.281 1.281 10 H -0.293 1.293 11 H -0.255 1.255 12 N -0.994 5.994 13 C 0.098 3.902 14 S 2.803 3.197 15 O -1.003 7.003 16 O -0.998 6.998 17 N -0.998 5.998 18 C 0.082 3.918 19 C 0.110 3.890 20 H 0.102 0.898 21 O -0.563 6.563 22 C -0.098 4.098 23 C 0.157 3.843 24 H 0.123 0.877 25 C 0.463 3.537 26 O -0.532 6.532 27 O -0.502 6.502 28 H 0.046 0.954 29 H 0.013 0.987 30 H 0.071 0.929 31 H 0.263 0.737 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.403 0.597 38 H 0.125 0.875 39 H 0.090 0.910 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.719 -6.451 3.730 14.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.039 0.961 4 C -0.566 4.566 5 H 0.095 0.905 6 C -0.183 4.183 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.207 1.207 10 H -0.219 1.219 11 H -0.179 1.179 12 N -0.836 5.836 13 C -0.048 4.048 14 S 2.815 3.185 15 O -0.987 6.987 16 O -0.982 6.982 17 N -0.838 5.838 18 C -0.043 4.043 19 C 0.049 3.951 20 H 0.120 0.880 21 O -0.371 6.371 22 C -0.137 4.137 23 C 0.048 3.952 24 H 0.141 0.859 25 C 0.304 3.696 26 O -0.421 6.421 27 O -0.315 6.315 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.254 0.746 38 H 0.143 0.857 39 H 0.108 0.892 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 12.339 -5.560 4.421 14.237 hybrid contribution -0.554 0.117 -0.528 0.775 sum 11.784 -5.443 3.893 13.552 Atomic orbital electron populations 1.21959 0.98092 1.00127 0.99745 1.18442 0.91849 0.91336 0.81537 0.96124 1.21596 1.31765 1.13199 0.90049 0.90456 1.25723 0.95135 0.95489 1.01951 1.70035 1.37404 1.24108 1.24337 0.85531 0.79322 0.77959 0.78656 1.20691 1.21882 1.17874 1.57778 1.64146 1.22777 1.38913 1.21444 1.00411 0.80307 1.02592 1.01110 0.72141 0.72508 0.72780 1.93499 1.86210 1.76639 1.42387 1.93558 1.83971 1.33917 1.86765 1.58843 1.28194 1.35772 1.60998 1.22994 0.92836 0.89138 0.99318 1.22836 0.83869 0.93983 0.94447 0.88012 1.86456 1.32146 1.32397 1.86073 1.22542 0.91024 0.94227 1.05864 1.20973 0.96979 0.83676 0.93529 0.85935 1.24105 0.73878 0.88797 0.82864 1.90729 1.44266 1.82784 1.24294 1.84442 1.69555 1.24459 1.53019 0.93526 0.96813 0.91069 0.92812 0.93290 0.89704 0.90556 0.88302 0.90832 0.74585 0.85719 0.89156 0.71163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.67 8.97 71.98 0.65 -6.02 16 2 C 0.27 13.07 2.62 44.25 0.12 13.19 16 3 H 0.02 1.15 6.91 -2.39 -0.02 1.13 16 4 C -0.53 -25.07 7.99 25.60 0.20 -24.86 16 5 H 0.08 3.40 7.33 -2.91 -0.02 3.38 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -49.51 11.32 21.45 0.24 -49.27 16 8 Si 0.96 38.71 29.54 68.60 2.03 40.74 16 9 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 12 N -0.99 -40.43 3.12 -520.46 -1.62 -42.05 16 13 C 0.10 3.21 9.28 127.77 1.19 4.40 16 14 S 2.80 116.82 5.95 -56.49 -0.34 116.48 16 15 O -1.00 -43.19 16.80 -128.00 -2.15 -45.34 16 16 O -1.00 -49.89 13.57 -119.01 -1.61 -51.50 16 17 N -1.00 -32.70 3.19 -488.14 -1.56 -34.26 16 18 C 0.08 1.95 6.72 86.85 0.58 2.53 16 19 C 0.11 2.01 4.43 31.99 0.14 2.16 16 20 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 21 O -0.56 -8.78 13.47 -148.98 -2.01 -10.79 16 22 C -0.10 -2.05 6.18 31.79 0.20 -1.86 16 23 C 0.16 4.73 3.58 44.59 0.16 4.89 16 24 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 25 C 0.46 15.51 6.99 71.24 0.50 16.00 16 26 O -0.53 -22.10 14.63 29.24 0.43 -21.68 16 27 O -0.50 -12.72 13.39 -51.42 -0.69 -13.40 16 28 H 0.05 2.04 7.67 -2.39 -0.02 2.02 16 29 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 31 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 2.72 7.02 -2.39 -0.02 2.71 16 34 H 0.08 2.05 7.79 -2.38 -0.02 2.03 16 35 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.40 2.63 9.12 -74.06 -0.68 1.95 16 38 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.09 1.87 7.84 -2.39 -0.02 1.85 16 40 H 0.43 7.23 9.10 -74.06 -0.67 6.55 16 Total: -1.00 -75.21 342.52 -3.36 -78.57 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -0.26 Total: 20.80 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 4.18 Total: 11.70 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -2.94 Total: -125.58 kcal Atomic # 8 Polarization: -136.68 SS G_CDS: -6.03 Total: -142.71 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Atomic # 16 Polarization: 116.82 SS G_CDS: -0.34 Total: 116.48 kcal Total: -75.21 -3.36 -78.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844793203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.702 kcal (2) G-P(sol) polarization free energy of solvation -75.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds