Wall clock time and date at job start Fri Apr 10 2020 18:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45211 * 1 3 3 C 1.34793 * 116.99742 * 2 1 4 4 O 1.21566 * 120.00315 * 359.97438 * 3 2 1 5 5 C 1.47026 * 120.00122 * 180.02562 * 3 2 1 6 6 C 1.36104 * 123.47389 * 359.97277 * 5 3 2 7 7 S 1.70448 * 110.81083 * 180.02562 * 6 5 3 8 8 C 1.75506 * 92.45076 * 0.02562 * 7 6 5 9 9 C 1.50694 * 124.69752 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47544 * 270.02396 * 9 8 7 11 11 C 1.35313 * 125.86779 * 125.32174 * 10 9 8 12 12 C 1.35349 * 106.17218 * 180.12213 * 11 10 9 13 13 C 1.50697 * 126.75364 * 179.85517 * 12 11 10 14 14 N 1.46499 * 109.47276 * 94.71254 * 13 12 11 15 15 C 1.36935 * 119.99938 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00518 * 359.72965 * 15 14 13 17 17 C 1.38817 * 119.99990 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47361 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46860 * 120.00310 * 19 17 15 22 22 H 1.48500 * 109.47264 * 240.00123 * 19 17 15 23 23 N 1.33774 * 106.49914 * 359.59715 * 12 11 10 24 24 N 1.28635 * 108.88067 * 0.25663 * 23 12 11 25 25 C 1.32734 * 110.59993 * 0.26645 * 8 7 6 26 26 H 1.08999 * 109.47043 * 299.99745 * 1 2 3 27 27 H 1.08995 * 109.47037 * 59.99981 * 1 2 3 28 28 H 1.08997 * 109.46926 * 180.02562 * 1 2 3 29 29 H 1.08006 * 124.59636 * 359.97438 * 6 5 3 30 30 H 1.09004 * 109.47368 * 150.02029 * 9 8 7 31 31 H 1.09003 * 109.47498 * 30.02852 * 9 8 7 32 32 H 1.08001 * 126.91913 * 359.97438 * 11 10 9 33 33 H 1.09004 * 109.47205 * 334.71228 * 13 12 11 34 34 H 1.09005 * 109.47240 * 214.71438 * 13 12 11 35 35 H 0.96999 * 119.99984 * 0.02562 * 14 13 12 36 36 H 0.96996 * 119.99743 * 179.97438 * 18 17 15 37 37 H 1.08001 * 123.45688 * 179.71603 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4019 2.2206 -0.0005 5 6 3.5322 1.2781 -0.0006 6 6 4.3414 0.1837 -0.0006 7 16 5.9826 0.6440 -0.0006 8 6 5.5813 2.3526 0.0002 9 6 6.5913 3.4709 0.0000 10 7 6.9199 3.8326 1.3811 11 6 8.1622 3.8723 1.9161 12 6 8.0049 4.2491 3.2066 13 6 9.0947 4.4367 4.2303 14 7 9.4912 5.8465 4.2689 15 6 10.4730 6.2583 5.1300 16 1 10.9521 5.5447 5.7839 17 6 10.8491 7.5941 5.1661 18 7 10.2616 8.4648 4.3730 19 14 12.1879 8.1560 6.3414 20 1 12.6846 6.9923 7.1189 21 1 13.3087 8.7487 5.5680 22 1 11.6354 9.1736 7.2711 23 7 6.6924 4.4278 3.3929 24 7 6.0771 4.1730 2.2924 25 6 4.2650 2.5231 0.0062 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.9911 -0.8380 0.0002 30 1 6.1740 4.3374 -0.5130 31 1 7.4949 3.1444 -0.5149 32 1 9.0918 3.6463 1.4151 33 1 9.9555 3.8244 3.9612 34 1 8.7273 4.1356 5.2115 35 1 9.0583 6.4882 3.6844 36 1 10.5241 9.3982 4.3986 37 1 3.7903 3.4932 0.0123 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881321514.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:55 Heat of formation + Delta-G solvation = 68.485561 kcal Electronic energy + Delta-G solvation = -22998.351819 eV Core-core repulsion = 19291.899326 eV Total energy + Delta-G solvation = -3706.452493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.93500 -40.74433 -38.11148 -36.64388 -35.33871 -34.36302 -31.84878 -31.23039 -29.82529 -28.38371 -27.07880 -25.76839 -25.27536 -22.81153 -22.38289 -21.38423 -20.58389 -19.94582 -18.09707 -17.90451 -17.31121 -16.94328 -16.70843 -16.67727 -16.13080 -14.77259 -14.60799 -14.57986 -14.23000 -13.97506 -13.70637 -13.56548 -13.22175 -13.01922 -12.95185 -12.76583 -12.54352 -12.46993 -11.90796 -11.60642 -11.21561 -11.19514 -10.87637 -10.83140 -10.80847 -10.42990 -10.05417 -9.90293 -9.70810 -9.52752 -8.99176 -8.87022 -8.81301 -6.89455 -5.72035 -3.01545 0.11020 0.90177 1.22429 1.33229 1.84769 2.30259 2.51495 2.76555 2.94673 3.46893 3.52377 3.54878 3.95527 4.23379 4.43273 4.59401 4.64556 4.71346 4.77443 4.79926 4.82577 4.88430 5.13268 5.27955 5.29560 5.46782 5.52535 5.65469 5.72627 5.86104 5.95482 6.19938 6.42904 6.68002 6.74546 6.81091 7.36874 7.73599 8.45244 8.87360 9.57082 10.13091 10.49006 11.50808 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.029536 B = 0.002181 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.757841 B =12836.723550 C =13218.200728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.529 3.471 4 O -0.499 6.499 5 C -0.154 4.154 6 C -0.174 4.174 7 S 0.229 5.771 8 C -0.240 4.240 9 C 0.196 3.804 10 N -0.302 5.302 11 C -0.045 4.045 12 C -0.004 4.004 13 C 0.233 3.767 14 N -0.726 5.726 15 C -0.239 4.239 16 H 0.074 0.926 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.909 3.091 20 H -0.279 1.279 21 H -0.292 1.292 22 H -0.292 1.292 23 N -0.253 5.253 24 N -0.087 5.087 25 C -0.036 4.036 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.183 0.817 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.190 0.810 33 H 0.038 0.962 34 H 0.039 0.961 35 H 0.385 0.615 36 H 0.254 0.746 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.574 -22.215 -16.640 30.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.275 6.275 3 C 0.371 3.629 4 O -0.388 6.388 5 C -0.170 4.170 6 C -0.313 4.313 7 S 0.497 5.503 8 C -0.357 4.357 9 C 0.073 3.927 10 N -0.097 5.097 11 C -0.195 4.195 12 C -0.142 4.142 13 C 0.104 3.896 14 N -0.371 5.371 15 C -0.370 4.370 16 H 0.092 0.908 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.740 3.260 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 N -0.120 5.120 24 N -0.066 5.066 25 C -0.066 4.066 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.200 0.800 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.207 0.793 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.219 0.781 36 H 0.064 0.936 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.780 -22.500 -16.193 30.957 hybrid contribution -0.034 1.176 0.017 1.176 sum -13.814 -21.324 -16.176 30.120 Atomic orbital electron populations 1.23305 0.75606 1.03839 1.02883 1.86535 1.23836 1.32512 1.84584 1.20367 0.88048 0.81556 0.72918 1.90891 1.66549 1.35866 1.45472 1.19300 0.90445 0.93147 1.14119 1.25994 0.99086 1.03950 1.02275 1.83201 1.02483 0.97379 1.67242 1.24145 0.97775 0.98267 1.15535 1.20238 0.98232 0.95737 0.78460 1.47319 1.05720 1.45463 1.11173 1.23427 0.89999 1.10230 0.95861 1.22479 0.93551 1.03236 0.94893 1.18948 0.89226 0.88835 0.92641 1.42318 1.44806 1.02370 1.47588 1.19280 1.11145 0.92680 1.13851 0.90827 1.24769 1.00302 0.96008 0.99959 1.69692 1.44733 1.02340 1.41255 0.86084 0.81245 0.78406 0.80238 1.20467 1.21940 1.21877 1.75131 1.05529 1.15993 1.15396 1.78291 1.18640 1.16725 0.92925 1.21062 0.91524 0.98376 0.95610 0.91600 0.91694 0.87877 0.80013 0.86365 0.86400 0.79342 0.94471 0.94362 0.78096 0.93576 0.82041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.57 101.05 1.07 1.30 16 2 O -0.36 -3.23 10.22 -40.74 -0.42 -3.65 16 3 C 0.53 5.89 7.92 34.29 0.27 6.16 16 4 O -0.50 -6.93 16.59 -19.32 -0.32 -7.25 16 5 C -0.15 -1.52 5.98 -104.65 -0.63 -2.15 16 6 C -0.17 -1.30 10.55 29.97 0.32 -0.98 16 7 S 0.23 1.58 23.00 -107.50 -2.47 -0.89 16 8 C -0.24 -2.11 5.81 -36.19 -0.21 -2.32 16 9 C 0.20 1.66 6.91 -5.20 -0.04 1.62 16 10 N -0.30 -4.13 3.43 -62.44 -0.21 -4.34 16 11 C -0.05 -0.66 11.50 -17.05 -0.20 -0.86 16 12 C 0.00 -0.08 6.61 -82.78 -0.55 -0.62 16 13 C 0.23 4.91 6.82 -5.20 -0.04 4.87 16 14 N -0.73 -19.11 5.59 -61.08 -0.34 -19.46 16 15 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 16 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -28.89 13.06 55.49 0.72 -28.17 16 19 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 23 N -0.25 -5.23 12.41 33.29 0.41 -4.81 16 24 N -0.09 -1.54 12.92 60.35 0.78 -0.76 16 25 C -0.04 -0.37 9.95 -39.01 -0.39 -0.76 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.18 0.94 8.02 -52.48 -0.42 0.52 16 30 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.12 0.59 8.07 -51.93 -0.42 0.17 16 32 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.39 10.95 7.66 -40.82 -0.31 10.64 16 36 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.16 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -37.31 351.05 -6.29 -43.60 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.08 Total: 4.01 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.63 Total: -1.17 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 1.36 Total: -57.55 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.74 Total: -10.90 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.47 Total: -0.89 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.31 -6.29 -43.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881321514.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.086 kcal (2) G-P(sol) polarization free energy of solvation -37.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds