Wall clock time and date at job start Fri Apr 10 2020 18:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45211 * 1 3 3 C 1.34793 * 116.99742 * 2 1 4 4 O 1.21566 * 120.00315 * 359.97438 * 3 2 1 5 5 C 1.47026 * 120.00122 * 180.02562 * 3 2 1 6 6 C 1.36104 * 123.47389 * 359.97277 * 5 3 2 7 7 S 1.70448 * 110.81083 * 180.02562 * 6 5 3 8 8 C 1.75506 * 92.45076 * 0.02562 * 7 6 5 9 9 C 1.50694 * 124.69752 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47544 * 270.02396 * 9 8 7 11 11 C 1.35313 * 125.86779 * 125.32174 * 10 9 8 12 12 C 1.35349 * 106.17218 * 180.12213 * 11 10 9 13 13 C 1.50697 * 126.75364 * 179.85517 * 12 11 10 14 14 N 1.46499 * 109.47276 * 94.71254 * 13 12 11 15 15 C 1.36935 * 119.99938 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00518 * 359.72965 * 15 14 13 17 17 C 1.38817 * 119.99990 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47361 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46860 * 120.00310 * 19 17 15 22 22 H 1.48500 * 109.47264 * 240.00123 * 19 17 15 23 23 N 1.33774 * 106.49914 * 359.59715 * 12 11 10 24 24 N 1.28635 * 108.88067 * 0.25663 * 23 12 11 25 25 C 1.32734 * 110.59993 * 0.26645 * 8 7 6 26 26 H 1.08999 * 109.47043 * 299.99745 * 1 2 3 27 27 H 1.08995 * 109.47037 * 59.99981 * 1 2 3 28 28 H 1.08997 * 109.46926 * 180.02562 * 1 2 3 29 29 H 1.08006 * 124.59636 * 359.97438 * 6 5 3 30 30 H 1.09004 * 109.47368 * 150.02029 * 9 8 7 31 31 H 1.09003 * 109.47498 * 30.02852 * 9 8 7 32 32 H 1.08001 * 126.91913 * 359.97438 * 11 10 9 33 33 H 1.09004 * 109.47205 * 334.71228 * 13 12 11 34 34 H 1.09005 * 109.47240 * 214.71438 * 13 12 11 35 35 H 0.96999 * 119.99984 * 0.02562 * 14 13 12 36 36 H 0.96996 * 119.99743 * 179.97438 * 18 17 15 37 37 H 1.08001 * 123.45688 * 179.71603 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4019 2.2206 -0.0005 5 6 3.5322 1.2781 -0.0006 6 6 4.3414 0.1837 -0.0006 7 16 5.9826 0.6440 -0.0006 8 6 5.5813 2.3526 0.0002 9 6 6.5913 3.4709 0.0000 10 7 6.9199 3.8326 1.3811 11 6 8.1622 3.8723 1.9161 12 6 8.0049 4.2491 3.2066 13 6 9.0947 4.4367 4.2303 14 7 9.4912 5.8465 4.2689 15 6 10.4730 6.2583 5.1300 16 1 10.9521 5.5447 5.7839 17 6 10.8491 7.5941 5.1661 18 7 10.2616 8.4648 4.3730 19 14 12.1879 8.1560 6.3414 20 1 12.6846 6.9923 7.1189 21 1 13.3087 8.7487 5.5680 22 1 11.6354 9.1736 7.2711 23 7 6.6924 4.4278 3.3929 24 7 6.0771 4.1730 2.2924 25 6 4.2650 2.5231 0.0062 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.9911 -0.8380 0.0002 30 1 6.1740 4.3374 -0.5130 31 1 7.4949 3.1444 -0.5149 32 1 9.0918 3.6463 1.4151 33 1 9.9555 3.8244 3.9612 34 1 8.7273 4.1356 5.2115 35 1 9.0583 6.4882 3.6844 36 1 10.5241 9.3982 4.3986 37 1 3.7903 3.4932 0.0123 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881321514.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:54 Heat of formation + Delta-G solvation = 42.100955 kcal Electronic energy + Delta-G solvation = -22999.495941 eV Core-core repulsion = 19291.899326 eV Total energy + Delta-G solvation = -3707.596615 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.18243 -41.52017 -38.81027 -37.46537 -36.87677 -35.73436 -33.65565 -32.13720 -31.50528 -29.02558 -27.87906 -27.52134 -25.96778 -24.75002 -23.38162 -22.50056 -21.76643 -20.65884 -19.38197 -18.77319 -18.63226 -18.09859 -17.46101 -17.41745 -17.15299 -16.58568 -15.85823 -15.64232 -15.45273 -15.04870 -14.76839 -14.65644 -14.33001 -14.23477 -13.87504 -13.70679 -13.61881 -13.25743 -13.05294 -12.97993 -12.79521 -12.46215 -12.30342 -12.01850 -11.88826 -11.86159 -11.74793 -11.63022 -11.06079 -10.95466 -10.23323 -10.12886 -9.58612 -8.99885 -7.91878 -5.21984 -0.54929 0.28570 0.44577 0.67183 0.70033 1.48373 1.52253 1.54402 1.59962 1.63220 1.67276 1.96720 2.60967 3.24506 3.40047 3.46559 3.73782 3.80463 3.96103 4.05297 4.18272 4.24289 4.26730 4.28824 4.29441 4.31098 4.55123 4.65652 4.68283 4.82462 4.90836 5.02286 5.18573 5.20706 5.24679 5.53154 5.68802 6.28130 6.58896 7.34824 7.57593 8.06880 8.32401 9.32311 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.029536 B = 0.002181 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.757841 B =12836.723550 C =13218.200728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.527 3.473 4 O -0.541 6.541 5 C -0.186 4.186 6 C -0.163 4.163 7 S 0.294 5.706 8 C -0.252 4.252 9 C 0.183 3.817 10 N -0.285 5.285 11 C -0.015 4.015 12 C -0.040 4.040 13 C 0.236 3.764 14 N -0.740 5.740 15 C -0.240 4.240 16 H 0.085 0.915 17 C -0.080 4.080 18 N -0.973 5.973 19 Si 0.979 3.021 20 H -0.261 1.261 21 H -0.291 1.291 22 H -0.299 1.299 23 N -0.303 5.303 24 N -0.108 5.108 25 C -0.053 4.053 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.138 0.862 29 H 0.207 0.793 30 H 0.130 0.870 31 H 0.165 0.835 32 H 0.235 0.765 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.370 0.630 36 H 0.250 0.750 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.788 -24.905 -17.777 32.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.372 3.628 4 O -0.433 6.433 5 C -0.202 4.202 6 C -0.301 4.301 7 S 0.562 5.438 8 C -0.369 4.369 9 C 0.063 3.937 10 N -0.080 5.080 11 C -0.166 4.166 12 C -0.179 4.179 13 C 0.108 3.892 14 N -0.382 5.382 15 C -0.372 4.372 16 H 0.103 0.897 17 C -0.272 4.272 18 N -0.624 5.624 19 Si 0.808 3.192 20 H -0.185 1.185 21 H -0.218 1.218 22 H -0.226 1.226 23 N -0.170 5.170 24 N -0.087 5.087 25 C -0.083 4.083 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.156 0.844 29 H 0.224 0.776 30 H 0.148 0.852 31 H 0.182 0.818 32 H 0.251 0.749 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.201 0.799 36 H 0.059 0.941 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.018 -25.269 -17.339 32.919 hybrid contribution -0.646 1.824 0.268 1.953 sum -12.665 -23.446 -17.072 31.647 Atomic orbital electron populations 1.23602 0.74161 1.06036 1.02569 1.86525 1.25301 1.31344 1.84036 1.20697 0.88686 0.81534 0.71861 1.90861 1.67493 1.37165 1.47788 1.19289 0.90069 0.93914 1.16942 1.26346 0.99627 1.04473 0.99701 1.82985 1.00871 0.94771 1.65131 1.24242 0.97249 1.00027 1.15415 1.20857 1.00465 0.96503 0.75881 1.47711 1.05001 1.43071 1.12188 1.23932 0.91508 1.06959 0.94248 1.22314 0.92727 1.06283 0.96534 1.18973 0.90867 0.86286 0.93081 1.42538 1.44367 1.04355 1.46965 1.19747 1.10873 0.93028 1.13535 0.89678 1.25657 1.03125 0.96315 1.02123 1.69864 1.46787 1.02347 1.43445 0.84988 0.78232 0.78026 0.77971 1.18467 1.21822 1.22628 1.75059 1.06745 1.17803 1.17359 1.78202 1.19420 1.17861 0.93232 1.21046 0.92443 0.98087 0.96709 0.92324 0.91722 0.84369 0.77641 0.85183 0.81781 0.74874 0.91618 0.95667 0.79850 0.94137 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.57 113.37 1.20 1.55 16 2 O -0.36 -6.24 10.22 -57.05 -0.58 -6.82 16 3 C 0.53 12.06 7.92 70.13 0.56 12.62 16 4 O -0.54 -16.00 16.59 19.62 0.33 -15.68 16 5 C -0.19 -3.62 5.98 -19.88 -0.12 -3.74 16 6 C -0.16 -2.05 10.55 67.32 0.71 -1.34 16 7 S 0.29 3.03 23.00 -56.49 -1.30 1.73 16 8 C -0.25 -3.92 5.81 24.51 0.14 -3.78 16 9 C 0.18 2.56 6.91 85.63 0.59 3.15 16 10 N -0.29 -7.20 3.43 -351.46 -1.21 -8.40 16 11 C -0.02 -0.40 11.50 83.49 0.96 0.56 16 12 C -0.04 -1.50 6.61 41.59 0.28 -1.22 16 13 C 0.24 9.79 6.82 85.63 0.58 10.38 16 14 N -0.74 -39.03 5.59 -347.17 -1.94 -40.97 16 15 C -0.24 -13.55 9.99 84.04 0.84 -12.71 16 16 H 0.09 4.50 7.83 -2.91 -0.02 4.47 16 17 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 18 N -0.97 -61.37 13.06 21.65 0.28 -61.09 16 19 Si 0.98 46.60 29.55 68.60 2.03 48.63 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 23 N -0.30 -12.69 12.41 -48.60 -0.60 -13.29 16 24 N -0.11 -3.83 12.92 37.02 0.48 -3.36 16 25 C -0.05 -1.08 9.95 22.68 0.23 -0.85 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.21 1.48 8.02 -2.91 -0.02 1.45 16 30 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.16 0.78 8.07 -2.39 -0.02 0.76 16 32 H 0.23 3.83 8.06 -2.91 -0.02 3.81 16 33 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.37 21.45 7.66 -92.71 -0.71 20.74 16 36 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -84.60 351.05 4.32 -80.28 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.41 Total: 18.60 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 6.43 Total: 0.38 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -2.99 Total: -127.11 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.26 Total: -22.50 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.30 Total: 1.73 kcal Total: -84.60 4.32 -80.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881321514.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.380 kcal (2) G-P(sol) polarization free energy of solvation -84.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds