Wall clock time and date at job start Fri Apr 10 2020 18:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 120.00292 * 2 1 4 4 O 1.21537 * 119.99474 * 359.97438 * 3 2 1 5 5 N 1.34771 * 119.99858 * 179.97438 * 3 2 1 6 6 C 1.34779 * 119.99858 * 180.02562 * 5 3 2 7 7 O 1.21237 * 119.99755 * 359.97438 * 6 5 3 8 8 C 1.50705 * 120.00129 * 179.97438 * 6 5 3 9 9 O 1.45192 * 109.46831 * 179.97438 * 8 6 5 10 10 C 1.34763 * 116.99726 * 179.97438 * 9 8 6 11 11 O 1.21513 * 119.99703 * 0.02562 * 10 9 8 12 12 C 1.47398 * 120.00219 * 180.02562 * 10 9 8 13 13 C 1.39729 * 120.19992 * 359.97438 * 12 10 9 14 14 C 1.37805 * 119.91272 * 179.97438 * 13 12 10 15 15 C 1.38588 * 120.33007 * 0.02562 * 14 13 12 16 16 C 1.38028 * 120.41707 * 359.97438 * 15 14 13 17 17 C 1.38832 * 120.07606 * 359.97438 * 16 15 14 18 18 O 1.35505 * 120.16557 * 179.97438 * 17 16 15 19 19 C 1.34808 * 116.99939 * 354.39821 * 18 17 16 20 20 H 1.08001 * 120.00267 * 5.06438 * 19 18 17 21 21 C 1.38707 * 119.99753 * 185.06265 * 19 18 17 22 22 N 1.31517 * 119.99994 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99839 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47145 * 89.99789 * 23 21 19 25 25 H 1.48495 * 109.47055 * 210.00002 * 23 21 19 26 26 H 1.48500 * 109.47083 * 329.99780 * 23 21 19 27 27 H 1.08997 * 109.47385 * 300.00660 * 1 2 3 28 28 H 1.09007 * 109.46860 * 60.00281 * 1 2 3 29 29 H 1.08994 * 109.47235 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99545 * 179.97438 * 2 1 3 31 31 H 0.96994 * 120.00444 * 359.97438 * 5 3 2 32 32 H 1.09000 * 109.46543 * 60.00135 * 8 6 5 33 33 H 1.08994 * 109.46991 * 300.00059 * 8 6 5 34 34 H 1.07997 * 120.04805 * 0.26151 * 13 12 10 35 35 H 1.07992 * 119.83705 * 180.02562 * 14 13 12 36 36 H 1.08000 * 119.79247 * 179.97438 * 15 14 13 37 37 H 1.08000 * 119.96099 * 180.02562 * 16 15 14 38 38 H 0.97001 * 119.99735 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5312 2.2197 -0.0005 5 7 3.4867 1.1671 0.0005 6 6 4.1606 2.3343 0.0010 7 8 3.5544 3.3842 0.0006 8 6 5.6677 2.3342 0.0022 9 8 6.1516 3.7031 0.0020 10 6 7.4876 3.8797 0.0035 11 8 8.2278 2.9159 0.0045 12 6 8.0511 5.2417 0.0039 13 6 7.2039 6.3528 0.0022 14 6 7.7370 7.6236 0.0032 15 6 9.1108 7.8061 0.0052 16 6 9.9603 6.7182 0.0069 17 6 9.4416 5.4304 0.0071 18 8 10.2739 4.3611 0.0082 19 6 11.5933 4.6123 -0.1081 20 1 11.9504 5.6316 -0.1144 21 6 12.4921 3.5618 -0.2198 22 7 12.0571 2.3207 -0.2126 23 14 14.3203 3.9099 -0.3802 24 1 14.9342 3.9649 0.9708 25 1 14.9622 2.8300 -1.1721 26 1 14.5180 5.2116 -1.0670 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9499 -0.8401 0.0004 31 1 3.9716 0.3271 0.0013 32 1 6.0316 1.8204 -0.8875 33 1 6.0303 1.8204 0.8924 34 1 6.1326 6.2160 0.0049 35 1 7.0811 8.4815 0.0023 36 1 9.5193 8.8059 0.0056 37 1 11.0298 6.8689 0.0090 38 1 12.6857 1.5860 -0.2903 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920632063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:58 Heat of formation + Delta-G solvation = -160.430296 kcal Electronic energy + Delta-G solvation = -26073.319002 eV Core-core repulsion = 21881.894351 eV Total energy + Delta-G solvation = -4191.424651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.40637 -41.58170 -40.48604 -39.52127 -38.13758 -37.23846 -35.98536 -35.54155 -34.35449 -32.46909 -30.66897 -30.34537 -27.81616 -27.39052 -25.19139 -23.55421 -23.06453 -21.87720 -21.82197 -20.28452 -19.90301 -19.47608 -18.44360 -18.20045 -17.94424 -17.40486 -17.03426 -16.44515 -16.33578 -16.13185 -15.91173 -15.82132 -15.46961 -15.39510 -15.27271 -14.84305 -14.40434 -14.19916 -13.81022 -13.77283 -13.55874 -13.08417 -13.02664 -12.73140 -12.55134 -12.39463 -12.24278 -12.11225 -11.87136 -11.64886 -11.42928 -11.16092 -10.95451 -10.83850 -10.24766 -9.94184 -9.12850 -8.47212 -6.17319 -0.07692 0.67772 0.77203 0.81826 1.36419 1.46740 1.54512 1.68038 1.85089 2.05605 2.15799 2.82013 2.83663 3.14527 3.35243 3.43145 3.89706 3.97005 4.02912 4.09083 4.25486 4.40603 4.50921 4.56927 4.63094 4.82830 4.89596 4.99253 5.05036 5.11759 5.18650 5.25759 5.39114 5.46290 5.57443 5.65861 5.94585 6.10102 6.40503 6.86864 6.90888 6.93624 7.24567 7.70814 8.72638 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.002740 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.592918 B =10215.138097 C =11753.616504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.717 5.717 3 C 0.688 3.312 4 O -0.588 6.588 5 N -0.666 5.666 6 C 0.532 3.468 7 O -0.499 6.499 8 C 0.049 3.951 9 O -0.346 6.346 10 C 0.506 3.494 11 O -0.516 6.516 12 C -0.237 4.237 13 C -0.015 4.015 14 C -0.206 4.206 15 C -0.025 4.025 16 C -0.254 4.254 17 C 0.162 3.838 18 O -0.182 6.182 19 C -0.428 4.428 20 H 0.111 0.889 21 C -0.017 4.017 22 N -0.900 5.900 23 Si 1.021 2.979 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.249 1.249 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.124 0.876 30 H 0.423 0.577 31 H 0.438 0.562 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.145 0.855 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.135 0.865 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.074 -4.544 0.162 15.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.375 5.375 3 C 0.388 3.612 4 O -0.464 6.464 5 N -0.336 5.336 6 C 0.317 3.683 7 O -0.368 6.368 8 C -0.029 4.029 9 O -0.263 6.263 10 C 0.354 3.646 11 O -0.406 6.406 12 C -0.239 4.239 13 C -0.034 4.034 14 C -0.225 4.225 15 C -0.043 4.043 16 C -0.273 4.273 17 C 0.107 3.893 18 O -0.084 6.084 19 C -0.503 4.503 20 H 0.128 0.872 21 C -0.217 4.217 22 N -0.535 5.535 23 Si 0.840 3.160 24 H -0.187 1.187 25 H -0.197 1.197 26 H -0.172 1.172 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.142 0.858 30 H 0.261 0.739 31 H 0.278 0.722 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.163 0.837 35 H 0.178 0.822 36 H 0.179 0.821 37 H 0.153 0.847 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.773 -3.765 0.163 16.217 hybrid contribution 1.270 -1.234 -0.027 1.770 sum -14.503 -4.999 0.136 15.341 Atomic orbital electron populations 1.21698 0.76369 1.04909 1.01599 1.44924 1.08740 1.06241 1.77595 1.16385 0.81282 0.85446 0.78073 1.91058 1.68007 1.32315 1.54975 1.43602 1.06641 1.11442 1.71922 1.20410 0.89348 0.83350 0.75166 1.90850 1.70407 1.32333 1.43256 1.22774 0.89317 0.83027 1.07738 1.86549 1.24019 1.30214 1.85518 1.21287 0.79546 0.90543 0.73274 1.90993 1.60169 1.42763 1.46637 1.18361 0.90526 0.90834 1.24226 1.21354 0.99335 0.91202 0.91465 1.21184 0.95449 0.96868 1.08976 1.21522 0.93222 0.98739 0.90789 1.21310 1.01631 0.91288 1.13066 1.19868 0.89581 0.88796 0.91085 1.84125 1.17985 1.29518 1.76780 1.22081 0.79104 0.95886 1.53250 0.87178 1.26717 1.05806 0.93882 0.95278 1.70271 1.37502 0.99716 1.45965 0.84561 0.73149 0.79104 0.79202 1.18710 1.19732 1.17195 0.93188 0.93205 0.85788 0.73886 0.72189 0.85615 0.85539 0.83714 0.82206 0.82095 0.84744 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.93 10.70 127.77 1.37 2.30 16 2 N -0.72 -8.05 5.72 -500.25 -2.86 -10.91 16 3 C 0.69 15.51 8.50 179.06 1.52 17.03 16 4 O -0.59 -20.77 14.74 18.93 0.28 -20.49 16 5 N -0.67 -12.15 5.24 -440.52 -2.31 -14.46 16 6 C 0.53 14.90 7.85 87.66 0.69 15.58 16 7 O -0.50 -19.71 14.90 26.71 0.40 -19.31 16 8 C 0.05 1.35 5.95 71.24 0.42 1.77 16 9 O -0.35 -13.19 9.01 -50.34 -0.45 -13.65 16 10 C 0.51 23.23 7.89 70.23 0.55 23.79 16 11 O -0.52 -27.61 14.96 26.79 0.40 -27.21 16 12 C -0.24 -10.72 5.89 -20.00 -0.12 -10.83 16 13 C -0.02 -0.55 9.61 22.53 0.22 -0.34 16 14 C -0.21 -6.18 10.02 22.25 0.22 -5.96 16 15 C -0.02 -0.77 10.03 22.30 0.22 -0.55 16 16 C -0.25 -10.48 9.16 22.36 0.20 -10.28 16 17 C 0.16 8.14 6.66 22.92 0.15 8.30 16 18 O -0.18 -10.97 7.84 1.07 0.01 -10.96 16 19 C -0.43 -24.45 9.49 67.93 0.64 -23.80 16 20 H 0.11 5.61 5.21 -2.91 -0.02 5.59 16 21 C -0.02 -0.93 5.49 84.85 0.47 -0.46 16 22 N -0.90 -55.11 13.67 21.62 0.30 -54.81 16 23 Si 1.02 41.65 29.55 68.60 2.03 43.68 16 24 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 25 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.42 1.01 8.84 -92.71 -0.82 0.19 16 31 H 0.44 3.07 8.71 -92.71 -0.81 2.27 16 32 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.15 4.72 7.61 -2.91 -0.02 4.70 16 35 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 36 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 37 H 0.13 5.45 5.64 -2.91 -0.02 5.44 16 38 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -96.61 345.33 3.88 -92.72 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.47 Total: 18.85 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 6.57 Total: 16.55 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -4.87 Total: -80.19 kcal Atomic # 8 Polarization: -92.25 SS G_CDS: 0.63 Total: -91.62 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -96.61 3.88 -92.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920632063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.707 kcal (2) G-P(sol) polarization free energy of solvation -96.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds