Wall clock time and date at job start Fri Apr 10 2020 18:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.46797 * 2 1 4 4 O 1.45196 * 109.47422 * 119.99663 * 2 1 3 5 5 C 1.34758 * 117.00230 * 270.00333 * 4 2 1 6 6 O 1.21510 * 120.00266 * 359.97438 * 5 4 2 7 7 C 1.47395 * 119.99997 * 179.97438 * 5 4 2 8 8 C 1.39728 * 120.20413 * 359.97438 * 7 5 4 9 9 C 1.37810 * 119.91447 * 179.97438 * 8 7 5 10 10 C 1.38586 * 120.33203 * 0.02562 * 9 8 7 11 11 C 1.38027 * 120.41400 * 359.97438 * 10 9 8 12 12 C 1.38838 * 120.07505 * 359.74504 * 11 10 9 13 13 O 1.35505 * 120.16533 * 180.28254 * 12 11 10 14 14 C 1.34814 * 116.99571 * 354.39346 * 13 12 11 15 15 H 1.07994 * 120.00312 * 5.06998 * 14 13 12 16 16 C 1.38705 * 119.99837 * 185.06580 * 14 13 12 17 17 N 1.31523 * 120.00080 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00117 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47320 * 90.00025 * 18 16 14 20 20 H 1.48502 * 109.47007 * 210.00069 * 18 16 14 21 21 H 1.48500 * 109.47097 * 330.00143 * 18 16 14 22 22 C 1.50702 * 109.47178 * 240.00291 * 2 1 3 23 23 O 1.21233 * 119.99487 * 244.99894 * 22 2 1 24 24 N 1.34772 * 120.00231 * 64.99607 * 22 2 1 25 25 C 1.34780 * 119.99825 * 180.02562 * 24 22 2 26 26 N 1.34781 * 119.99710 * 179.73001 * 25 24 22 27 27 O 1.21538 * 120.00054 * 359.97438 * 25 24 22 28 28 H 1.09006 * 109.47490 * 300.00275 * 1 2 3 29 29 H 1.09000 * 109.47171 * 60.00179 * 1 2 3 30 30 H 1.08994 * 109.47372 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.04098 * 359.97438 * 8 7 5 32 32 H 1.08000 * 119.82917 * 179.97438 * 9 8 7 33 33 H 1.07996 * 119.79217 * 179.97438 * 10 9 8 34 34 H 1.07993 * 119.95909 * 180.02562 * 11 10 9 35 35 H 0.96998 * 120.00365 * 180.02562 * 17 16 14 36 36 H 0.97003 * 119.99776 * 0.02562 * 24 22 2 37 37 H 0.97001 * 119.99917 * 359.97438 * 26 25 24 38 38 H 0.96994 * 119.99663 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0140 -0.6844 1.1855 5 6 2.2179 0.0671 2.2854 6 8 1.9977 1.2617 2.2545 7 6 2.7081 -0.5601 3.5260 8 6 2.9622 -1.9334 3.5665 9 6 3.4209 -2.5135 4.7294 10 6 3.6314 -1.7414 5.8608 11 6 3.3848 -0.3836 5.8360 12 6 2.9279 0.2194 4.6719 13 8 2.6907 1.5533 4.6439 14 6 2.8062 2.2200 5.8099 15 1 3.1560 1.7065 6.6932 16 6 2.4757 3.5655 5.8751 17 7 2.0493 4.1908 4.7994 18 14 2.6363 4.4896 7.4905 19 1 3.9976 5.0741 7.5933 20 1 1.6258 5.5765 7.5416 21 1 2.4133 3.5528 8.6209 22 6 2.0323 -0.7104 -1.2305 23 8 2.6527 -1.7462 -1.1215 24 7 1.7918 -0.1942 -2.4520 25 6 2.2407 -0.8298 -3.5525 26 7 1.9955 -0.3164 -4.7743 27 8 2.8627 -1.8682 -3.4433 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.7993 -2.5396 2.6876 32 1 3.6164 -3.5752 4.7592 33 1 3.9906 -2.2051 6.7676 34 1 3.5518 0.2111 6.7219 35 1 1.8185 5.1318 4.8449 36 1 1.2957 0.6348 -2.5391 37 1 1.4957 0.5103 -4.8616 38 1 2.3188 -0.7736 -5.5663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920632632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:01 Heat of formation + Delta-G solvation = -170.102634 kcal Electronic energy + Delta-G solvation = -26705.953643 eV Core-core repulsion = 22514.109568 eV Total energy + Delta-G solvation = -4191.844075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.48496 -41.59709 -40.53151 -39.39895 -38.14441 -37.31602 -36.03456 -34.51095 -34.35578 -33.14561 -31.93926 -30.64741 -27.46669 -26.66297 -25.42623 -23.75590 -23.06503 -21.84675 -21.63237 -20.01840 -19.88807 -19.52899 -18.65328 -18.41793 -17.45042 -17.38418 -17.06089 -16.82656 -16.42160 -16.14744 -16.11729 -15.65776 -15.50556 -15.35095 -15.19421 -14.92354 -14.48680 -14.20719 -13.97314 -13.56402 -13.46804 -13.04515 -12.82846 -12.73035 -12.55390 -12.39334 -12.16174 -12.11262 -11.93667 -11.63699 -11.43986 -11.13324 -10.89514 -10.84066 -10.80724 -9.94760 -9.13206 -8.47259 -6.17533 -0.08197 0.67326 0.75908 0.91078 1.36003 1.46294 1.54068 1.67978 1.87743 2.07681 2.15509 2.81577 2.97537 3.14347 3.34776 3.50392 3.67265 3.79895 3.86557 4.07646 4.23568 4.46377 4.51011 4.59070 4.63616 4.82473 4.90496 5.02995 5.05164 5.11674 5.19589 5.34799 5.45829 5.57210 5.65192 5.81495 5.94314 6.09714 6.35669 6.86728 6.89217 6.93434 7.34741 7.70553 8.72448 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.003268 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.800328 B = 8566.600450 C = 9973.050090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.067 3.933 3 H 0.117 0.883 4 O -0.340 6.340 5 C 0.504 3.496 6 O -0.515 6.515 7 C -0.238 4.238 8 C -0.016 4.016 9 C -0.206 4.206 10 C -0.025 4.025 11 C -0.254 4.254 12 C 0.163 3.837 13 O -0.182 6.182 14 C -0.428 4.428 15 H 0.111 0.889 16 C -0.016 4.016 17 N -0.899 5.899 18 Si 1.021 2.979 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.248 1.248 22 C 0.533 3.467 23 O -0.497 6.497 24 N -0.665 5.665 25 C 0.695 3.305 26 N -0.822 5.822 27 O -0.595 6.595 28 H 0.064 0.936 29 H 0.125 0.875 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.135 0.865 35 H 0.273 0.727 36 H 0.437 0.563 37 H 0.423 0.577 38 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 -6.122 -12.155 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.008 3.992 3 H 0.135 0.865 4 O -0.258 6.258 5 C 0.351 3.649 6 O -0.404 6.404 7 C -0.241 4.241 8 C -0.034 4.034 9 C -0.224 4.224 10 C -0.043 4.043 11 C -0.273 4.273 12 C 0.107 3.893 13 O -0.084 6.084 14 C -0.504 4.504 15 H 0.128 0.872 16 C -0.216 4.216 17 N -0.533 5.533 18 Si 0.839 3.161 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.172 1.172 22 C 0.318 3.682 23 O -0.366 6.366 24 N -0.335 5.335 25 C 0.393 3.607 26 N -0.395 5.395 27 O -0.471 6.471 28 H 0.083 0.917 29 H 0.143 0.857 30 H 0.096 0.904 31 H 0.163 0.837 32 H 0.179 0.821 33 H 0.179 0.821 34 H 0.152 0.848 35 H 0.082 0.918 36 H 0.277 0.723 37 H 0.255 0.745 38 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -3.569 -6.842 -12.138 14.384 hybrid contribution -0.275 1.532 0.007 1.557 sum -3.844 -5.310 -12.131 13.789 Atomic orbital electron populations 1.22201 0.88861 1.04704 1.05784 1.22587 0.98172 0.97370 0.81082 0.86503 1.86632 1.78330 1.41303 1.19494 1.21339 0.74803 0.84986 0.83745 1.90971 1.49006 1.16578 1.83891 1.18385 1.20075 0.95163 0.90436 1.21353 0.91896 0.90769 0.99364 1.21185 1.07234 1.01566 0.92433 1.21524 0.91916 0.91564 0.99282 1.21312 1.10672 0.97350 0.97996 1.19864 0.91256 0.84515 0.93658 1.84127 1.74865 1.14926 1.34514 1.22077 1.47148 0.93717 0.87432 0.87222 1.26711 0.95021 0.96553 1.03339 1.70272 1.40962 1.11240 1.30869 0.84567 0.78777 0.77666 0.75043 1.18800 1.19647 1.17175 1.20475 0.78687 0.84722 0.84340 1.90840 1.36224 1.23189 1.86316 1.43624 1.56070 1.29038 1.04790 1.16327 0.79415 0.82931 0.82000 1.42781 1.61216 1.30691 1.04772 1.91103 1.44741 1.25191 1.86111 0.91719 0.85671 0.90427 0.83723 0.82134 0.82065 0.84756 0.91758 0.72272 0.74468 0.73630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.50 71.98 0.68 -2.79 16 2 C 0.07 1.98 2.98 29.85 0.09 2.07 16 3 H 0.12 3.48 7.16 -2.39 -0.02 3.46 16 4 O -0.34 -13.31 8.67 -50.31 -0.44 -13.75 16 5 C 0.50 23.55 7.86 70.23 0.55 24.10 16 6 O -0.52 -27.88 14.43 26.80 0.39 -27.50 16 7 C -0.24 -10.90 5.89 -20.00 -0.12 -11.02 16 8 C -0.02 -0.57 9.61 22.53 0.22 -0.35 16 9 C -0.21 -6.20 10.02 22.25 0.22 -5.98 16 10 C -0.02 -0.78 10.03 22.30 0.22 -0.56 16 11 C -0.25 -10.58 9.16 22.36 0.20 -10.37 16 12 C 0.16 8.23 6.66 22.92 0.15 8.38 16 13 O -0.18 -11.05 7.84 1.01 0.01 -11.05 16 14 C -0.43 -24.58 9.49 67.93 0.64 -23.94 16 15 H 0.11 5.61 5.21 -2.91 -0.02 5.60 16 16 C -0.02 -0.89 5.49 84.85 0.47 -0.42 16 17 N -0.90 -55.08 13.67 21.62 0.30 -54.79 16 18 Si 1.02 41.75 29.55 68.60 2.03 43.77 16 19 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 20 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 21 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 22 C 0.53 15.53 7.12 87.66 0.62 16.15 16 23 O -0.50 -20.04 14.91 26.71 0.40 -19.64 16 24 N -0.66 -12.12 5.20 -440.52 -2.29 -14.41 16 25 C 0.69 14.86 8.78 179.05 1.57 16.43 16 26 N -0.82 -6.71 8.88 -184.78 -1.64 -8.35 16 27 O -0.60 -20.81 15.58 18.93 0.29 -20.51 16 28 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.12 1.44 7.92 -2.39 -0.02 1.42 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.15 4.74 7.61 -2.91 -0.02 4.71 16 32 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 34 H 0.13 5.49 5.64 -2.91 -0.02 5.47 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.44 3.12 8.49 -92.71 -0.79 2.33 16 37 H 0.42 -0.16 8.84 -92.71 -0.82 -0.98 16 38 H 0.43 2.72 8.93 -92.71 -0.83 1.89 16 Total: -1.00 -97.20 343.16 3.32 -93.88 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -1.26 Total: 20.64 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 5.53 Total: 11.69 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -3.64 Total: -77.55 kcal Atomic # 8 Polarization: -93.10 SS G_CDS: 0.65 Total: -92.45 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -97.20 3.32 -93.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920632632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.219 kcal (2) G-P(sol) polarization free energy of solvation -97.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds