Wall clock time and date at job start Fri Apr 10 2020 18:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00503 * 2 1 4 4 H 1.48500 * 109.46845 * 85.02016 * 3 2 1 5 5 H 1.48500 * 109.46905 * 325.02108 * 3 2 1 6 6 H 1.48502 * 109.47029 * 205.02197 * 3 2 1 7 7 C 1.38812 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00366 * 187.37420 * 7 2 1 9 9 N 1.36942 * 119.99928 * 7.38075 * 7 2 1 10 10 C 1.47026 * 125.64594 * 6.33469 * 9 7 2 11 11 C 1.54336 * 107.26214 * 178.85090 * 10 9 7 12 12 H 1.09004 * 110.51446 * 96.45669 * 11 10 9 13 13 O 1.42898 * 111.00273 * 219.59851 * 11 10 9 14 14 C 1.55152 * 103.02136 * 338.14337 * 11 10 9 15 15 H 1.08995 * 111.00267 * 277.22947 * 14 11 10 16 16 N 1.46504 * 111.03543 * 153.39576 * 14 11 10 17 17 C 1.34775 * 120.00113 * 161.33101 * 16 14 11 18 18 O 1.21705 * 119.99848 * 359.97438 * 17 16 14 19 19 C 1.46587 * 120.00157 * 180.02562 * 17 16 14 20 20 C 1.35869 * 125.41782 * 180.02562 * 19 17 16 21 21 C 1.39165 * 113.99921 * 179.97438 * 20 19 17 22 22 C 1.34363 * 114.00063 * 0.02562 * 21 20 19 23 23 S 1.71486 * 111.07690 * 359.71729 * 22 21 20 24 24 C 1.52368 * 110.38957 * 179.97438 * 22 21 20 25 25 C 1.54161 * 104.90148 * 342.44648 * 24 22 21 26 26 C 1.52825 * 136.18752 * 180.02562 * 21 20 19 27 27 C 1.47419 * 125.64839 * 186.65061 * 9 7 2 28 28 H 0.96999 * 119.99355 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.88022 * 298.40008 * 10 9 7 30 30 H 1.08996 * 109.87722 * 59.56577 * 10 9 7 31 31 H 0.96697 * 114.00522 * 293.79046 * 13 11 10 32 32 H 0.97002 * 119.99780 * 341.33035 * 16 14 11 33 33 H 1.08003 * 122.99760 * 359.95439 * 20 19 17 34 34 H 1.09004 * 110.35401 * 223.59371 * 24 22 21 35 35 H 1.09004 * 110.44780 * 101.34858 * 24 22 21 36 36 H 1.09001 * 110.96338 * 268.59688 * 25 24 22 37 37 H 1.08998 * 110.96034 * 144.85405 * 25 24 22 38 38 H 1.09001 * 110.32872 * 316.50843 * 26 21 20 39 39 H 1.09000 * 110.32928 * 78.73774 * 26 21 20 40 40 H 1.09002 * 110.36544 * 322.92392 * 27 9 7 41 41 H 1.08992 * 110.37197 * 85.13948 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.3926 2.1071 1.3948 5 1 1.5044 2.6200 -0.8026 6 1 3.5965 1.4119 -0.5922 7 6 2.0102 -1.2022 -0.0005 8 1 3.0834 -1.2062 0.1195 9 7 1.3340 -2.3831 -0.1534 10 6 -0.0986 -2.5172 -0.4558 11 6 -0.4046 -4.0261 -0.5640 12 1 -0.7972 -4.4049 0.3797 13 8 -1.3182 -4.2881 -1.6310 14 6 0.9859 -4.6438 -0.8676 15 1 1.2193 -4.5774 -1.9302 16 7 1.0577 -6.0313 -0.4029 17 6 2.0069 -6.8562 -0.8878 18 8 2.8041 -6.4485 -1.7121 19 6 2.0784 -8.2446 -0.4232 20 6 2.9864 -9.1673 -0.8359 21 6 2.8369 -10.4152 -0.2384 22 6 1.8213 -10.4831 0.6386 23 16 1.0096 -8.9773 0.7600 24 6 1.7324 -11.8799 1.2409 25 6 2.5466 -12.7757 0.2864 26 6 3.5433 -11.7680 -0.3186 27 6 1.9204 -3.7305 -0.0356 28 1 -0.4849 0.8401 0.0004 29 1 -0.6897 -2.0735 0.3454 30 1 -0.3252 -2.0261 -1.4021 31 1 -2.2025 -3.9229 -1.4904 32 1 0.4221 -6.3563 0.2538 33 1 3.7553 -8.9515 -1.5631 34 1 0.6945 -12.2111 1.2787 35 1 2.1703 -11.8928 2.2390 36 1 1.9081 -13.2038 -0.4863 37 1 3.0687 -13.5584 0.8366 38 1 3.7566 -12.0229 -1.3567 39 1 4.4640 -11.7496 0.2647 40 1 2.9290 -3.7427 -0.4488 41 1 1.9345 -4.0483 1.0069 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078127995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:18 Heat of formation + Delta-G solvation = -20.491789 kcal Electronic energy + Delta-G solvation = -24278.926762 eV Core-core repulsion = 20672.156265 eV Total energy + Delta-G solvation = -3606.770497 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.00370 -39.35108 -37.81462 -35.10685 -34.55872 -34.08452 -31.74925 -29.12047 -28.74045 -28.00536 -26.91281 -24.67026 -23.45829 -22.04518 -20.74134 -20.47412 -20.11085 -18.80318 -18.06695 -17.10940 -16.77363 -16.22472 -15.94637 -15.70014 -14.97782 -14.73517 -14.53914 -14.08376 -13.99518 -13.28611 -13.22416 -13.02148 -12.72943 -12.60740 -12.44404 -12.24521 -12.09799 -12.01876 -11.56640 -11.55756 -11.25320 -11.17249 -11.08265 -10.92832 -10.81330 -10.19496 -9.99818 -9.90975 -9.80820 -9.37643 -8.96651 -8.78694 -8.65104 -8.52022 -6.90621 -5.76233 -3.12316 0.40073 1.16738 1.74698 2.17402 3.18024 3.27327 3.39376 3.45113 3.47914 4.13999 4.18397 4.43172 4.59288 4.59837 4.69891 4.95357 5.11615 5.15514 5.17039 5.30090 5.38170 5.42415 5.50384 5.54638 5.57057 5.64341 5.74529 5.77199 5.80456 6.03513 6.09130 6.10403 6.17112 6.47493 6.62068 6.84996 7.29205 7.45390 7.59082 7.72102 8.08064 8.16898 8.28639 9.14003 9.74747 10.37939 11.34417 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.028189 B = 0.002621 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.050588 B =10680.652252 C =11096.455463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.081 0.919 9 N -0.598 5.598 10 C 0.149 3.851 11 C 0.070 3.930 12 H 0.059 0.941 13 O -0.563 6.563 14 C 0.140 3.860 15 H 0.105 0.895 16 N -0.710 5.710 17 C 0.591 3.409 18 O -0.525 6.525 19 C -0.255 4.255 20 C -0.041 4.041 21 C -0.138 4.138 22 C -0.226 4.226 23 S 0.217 5.783 24 C -0.044 4.044 25 C -0.118 4.118 26 C -0.057 4.057 27 C 0.130 3.870 28 H 0.253 0.747 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.377 0.623 32 H 0.394 0.606 33 H 0.151 0.849 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 -25.369 3.225 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.098 0.902 9 N -0.326 5.326 10 C 0.024 3.976 11 C 0.010 3.990 12 H 0.077 0.923 13 O -0.368 6.368 14 C 0.035 3.965 15 H 0.123 0.877 16 N -0.360 5.360 17 C 0.376 3.624 18 O -0.403 6.403 19 C -0.375 4.375 20 C -0.074 4.074 21 C -0.151 4.151 22 C -0.345 4.345 23 S 0.486 5.514 24 C -0.083 4.083 25 C -0.157 4.157 26 C -0.096 4.096 27 C 0.002 3.998 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.224 0.776 32 H 0.228 0.772 33 H 0.169 0.831 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.581 -24.552 3.234 24.771 hybrid contribution 0.789 0.574 -0.195 0.995 sum 0.208 -23.978 3.040 24.171 Atomic orbital electron populations 1.69911 1.04992 1.25210 1.56899 1.24820 0.95739 0.97845 1.02016 0.86056 0.78776 0.83211 0.77475 1.21585 1.21572 1.20507 1.19089 0.91045 0.82292 1.43147 0.90159 1.44244 1.05014 0.99877 1.83464 1.21873 0.86496 0.87925 1.01331 1.23444 0.88462 0.98565 0.88573 0.92330 1.86463 1.24901 1.80079 1.45376 1.22289 0.95131 0.78331 1.00716 0.87694 1.45791 1.33067 1.12168 1.44945 1.16854 0.81256 0.83025 0.81273 1.90850 1.40557 1.75965 1.32883 1.24305 1.05587 0.99144 1.08512 1.20209 0.98160 0.90084 0.98937 1.20375 0.98838 0.96204 0.99644 1.25641 1.02450 1.01687 1.04717 1.82804 1.30931 0.99330 1.38303 1.20861 1.01364 0.87200 0.98851 1.22288 0.97592 0.97138 0.98687 1.20997 0.97832 0.88871 1.01936 1.21848 0.96101 0.85716 0.96128 0.93672 0.91511 0.93611 0.77579 0.77196 0.83124 0.90519 0.89791 0.90613 0.90033 0.90593 0.90178 0.92932 0.95818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.77 10.48 55.49 0.58 -26.19 16 2 C -0.01 -0.23 5.45 -17.43 -0.09 -0.32 16 3 Si 0.91 22.23 29.56 -169.99 -5.02 17.21 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.43 10.26 -15.06 -0.15 -6.58 16 8 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 9 N -0.60 -15.50 3.39 -170.07 -0.58 -16.08 16 10 C 0.15 3.55 5.21 -3.06 -0.02 3.54 16 11 C 0.07 1.30 3.94 -24.89 -0.10 1.20 16 12 H 0.06 0.96 8.00 -51.93 -0.42 0.55 16 13 O -0.56 -9.72 13.40 -35.23 -0.47 -10.19 16 14 C 0.14 2.72 3.04 -65.78 -0.20 2.52 16 15 H 0.11 2.30 7.73 -51.93 -0.40 1.90 16 16 N -0.71 -11.43 5.23 -53.06 -0.28 -11.71 16 17 C 0.59 10.00 7.78 -12.89 -0.10 9.90 16 18 O -0.52 -10.78 16.57 5.18 0.09 -10.69 16 19 C -0.26 -3.49 6.41 -37.07 -0.24 -3.73 16 20 C -0.04 -0.52 9.99 -40.09 -0.40 -0.92 16 21 C -0.14 -1.43 6.49 -104.58 -0.68 -2.11 16 22 C -0.23 -2.19 7.10 -34.85 -0.25 -2.43 16 23 S 0.22 2.25 22.15 -107.50 -2.38 -0.13 16 24 C -0.04 -0.29 6.81 -26.45 -0.18 -0.47 16 25 C -0.12 -0.66 7.11 -25.55 -0.18 -0.84 16 26 C -0.06 -0.41 6.81 -26.25 -0.18 -0.59 16 27 C 0.13 2.85 6.93 -2.53 -0.02 2.83 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 29 H 0.07 1.72 6.99 -51.93 -0.36 1.36 16 30 H 0.05 1.21 7.83 -51.93 -0.41 0.80 16 31 H 0.38 4.88 9.12 45.56 0.42 5.29 16 32 H 0.39 5.27 7.62 -40.82 -0.31 4.96 16 33 H 0.15 1.87 8.05 -52.48 -0.42 1.45 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -33.77 352.05 -10.38 -44.15 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.83 Total: 6.33 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -2.79 Total: 2.00 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.27 Total: -53.98 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.39 Total: -20.88 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.38 Total: -0.13 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.77 -10.38 -44.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078127995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.657 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds