Wall clock time and date at job start Fri Apr 10 2020 18:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86809 * 119.99911 * 2 1 4 4 H 1.48500 * 109.47081 * 270.00556 * 3 2 1 5 5 H 1.48500 * 109.46629 * 30.00552 * 3 2 1 6 6 H 1.48502 * 109.46896 * 150.00198 * 3 2 1 7 7 C 1.39931 * 120.00574 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00284 * 192.37741 * 7 2 1 9 9 C 1.41224 * 119.99704 * 12.36847 * 7 2 1 10 10 C 1.40823 * 120.58858 * 207.06398 * 9 7 2 11 11 N 1.31440 * 120.37472 * 179.70458 * 10 9 7 12 12 C 1.32618 * 121.76985 * 0.56686 * 11 10 9 13 13 N 1.39391 * 119.41338 * 179.70625 * 12 11 10 14 14 C 1.36010 * 126.49132 * 130.00175 * 13 12 11 15 15 N 1.30474 * 108.54233 * 180.23396 * 14 13 12 16 16 C 1.34176 * 109.38239 * 359.76838 * 15 14 13 17 17 C 1.34617 * 108.23031 * 359.97438 * 16 15 14 18 18 C 1.50703 * 126.58302 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.47404 * 85.02288 * 18 17 16 20 20 H 1.09003 * 109.47127 * 305.00347 * 19 18 17 21 21 N 1.46904 * 109.46976 * 64.99880 * 19 18 17 22 22 C 1.52999 * 109.47264 * 184.99854 * 19 18 17 23 23 O 1.42904 * 109.46990 * 175.00307 * 22 19 18 24 24 C 1.39528 * 121.16788 * 359.43341 * 12 11 10 25 25 Cl 1.73597 * 120.25925 * 180.29858 * 24 12 11 26 26 C 1.36823 * 119.48427 * 0.26961 * 24 12 11 27 27 H 0.96992 * 120.00311 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.80915 * 0.02562 * 10 9 7 29 29 H 1.07994 * 125.73188 * 359.97438 * 14 13 12 30 30 H 1.07997 * 125.88676 * 180.02562 * 16 15 14 31 31 H 1.08997 * 109.46933 * 205.02687 * 18 17 16 32 32 H 1.09005 * 109.47165 * 325.02536 * 18 17 16 33 33 H 1.00903 * 110.99981 * 60.00003 * 21 19 18 34 34 H 1.00901 * 110.99985 * 183.95484 * 21 19 18 35 35 H 1.08993 * 109.47463 * 294.99995 * 22 19 18 36 36 H 1.08997 * 109.46911 * 55.00405 * 22 19 18 37 37 H 0.96695 * 113.99974 * 180.02562 * 23 22 19 38 38 H 1.07996 * 120.81400 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4898 2.0466 -1.4001 5 1 1.4399 2.6526 0.7002 6 1 3.5401 1.4402 0.7000 7 6 2.0082 -1.2118 -0.0005 8 1 3.0694 -1.2227 0.1999 9 6 1.3268 -2.4205 -0.2631 10 6 1.8027 -3.6392 0.2578 11 7 1.1619 -4.7610 0.0157 12 6 0.0638 -4.7915 -0.7273 13 7 -0.5732 -6.0097 -0.9578 14 6 -1.8970 -6.2743 -0.7923 15 7 -2.1126 -7.5231 -1.1027 16 6 -0.9577 -8.0945 -1.4770 17 6 0.0157 -7.1680 -1.3980 18 6 1.4736 -7.3670 -1.7236 19 6 1.6920 -7.1727 -3.2254 20 1 1.0285 -7.8378 -3.7781 21 7 1.3999 -5.7789 -3.5863 22 6 3.1459 -7.4961 -3.5754 23 8 3.3213 -7.4277 -4.9920 24 6 -0.4683 -3.6249 -1.2776 25 17 -1.9114 -3.6910 -2.2403 26 6 0.1558 -2.4284 -1.0522 27 1 -0.4850 0.8400 0.0004 28 1 2.6965 -3.6515 0.8640 29 1 -2.6437 -5.5702 -0.4559 30 1 -0.8311 -9.1207 -1.7888 31 1 2.0713 -6.6409 -1.1725 32 1 1.7749 -8.3755 -1.4401 33 1 2.0023 -5.1421 -3.0867 34 1 1.4743 -5.6403 -4.5830 35 1 3.8050 -6.7748 -3.0925 36 1 3.3886 -8.5001 -3.2273 37 1 4.2215 -7.6223 -5.2866 38 1 -0.2371 -1.5125 -1.4681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158209326.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:57 Heat of formation + Delta-G solvation = 27.818657 kcal Electronic energy + Delta-G solvation = -25058.198687 eV Core-core repulsion = 21347.939038 eV Total energy + Delta-G solvation = -3710.259648 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.094 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.49502 -38.68018 -37.72210 -35.72684 -34.93753 -34.65039 -32.74414 -30.96579 -30.56565 -29.34586 -27.79219 -25.72249 -25.27872 -22.64413 -22.21992 -20.91705 -20.43370 -19.46409 -17.85719 -17.73144 -17.00746 -16.01416 -15.91721 -15.40634 -14.83328 -14.62400 -14.50433 -14.26276 -13.98626 -13.52384 -13.17874 -12.98388 -12.81124 -12.52154 -12.24077 -12.14434 -11.93201 -11.74818 -11.62198 -11.50143 -11.16760 -11.00467 -10.90444 -10.55830 -10.19301 -10.11613 -9.88128 -9.42895 -9.33782 -8.56372 -8.45763 -8.34849 -7.77289 -7.59741 -7.22089 -4.88994 1.93465 2.43436 2.72638 2.83743 2.87031 2.97395 3.00118 3.51739 3.59116 3.76084 4.12227 4.18433 4.76773 4.98817 5.08277 5.22105 5.30185 5.33629 5.35915 5.62153 5.67808 5.77981 5.91549 6.05098 6.16052 6.17500 6.27682 6.45233 6.59130 6.68772 6.87289 7.06906 7.29358 7.37788 7.42600 7.49583 7.50576 7.78117 7.89363 8.09254 8.23311 8.25834 8.71377 9.04814 9.68020 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.004683 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.283975 B = 5978.033414 C = 7077.868247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.070 3.930 3 Si 0.921 3.079 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.427 4.427 8 H 0.092 0.908 9 C 0.074 3.926 10 C -0.003 4.003 11 N -0.445 5.445 12 C 0.180 3.820 13 N -0.355 5.355 14 C 0.189 3.811 15 N -0.500 5.500 16 C -0.054 4.054 17 C 0.024 3.976 18 C -0.039 4.039 19 C 0.104 3.896 20 H 0.085 0.915 21 N -0.825 5.825 22 C 0.039 3.961 23 O -0.573 6.573 24 C -0.020 4.020 25 Cl -0.090 7.090 26 C -0.121 4.121 27 H 0.291 0.709 28 H 0.141 0.859 29 H 0.193 0.807 30 H 0.158 0.842 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.338 0.662 34 H 0.342 0.658 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.377 0.623 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.644 -5.127 -4.189 8.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.152 4.152 3 Si 0.744 3.256 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.455 4.455 8 H 0.110 0.890 9 C 0.069 3.931 10 C -0.168 4.168 11 N -0.154 5.154 12 C -0.045 4.045 13 N -0.032 5.032 14 C -0.093 4.093 15 N -0.218 5.218 16 C -0.201 4.201 17 C -0.093 4.093 18 C -0.078 4.078 19 C -0.009 4.009 20 H 0.103 0.897 21 N -0.354 5.354 22 C -0.041 4.041 23 O -0.378 6.378 24 C -0.050 4.050 25 Cl -0.062 7.062 26 C -0.147 4.147 27 H 0.103 0.897 28 H 0.158 0.842 29 H 0.210 0.790 30 H 0.175 0.825 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.223 0.777 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.494 -6.008 -3.527 7.794 hybrid contribution 2.213 1.927 -0.712 3.020 sum 5.707 -4.081 -4.240 8.198 Atomic orbital electron populations 1.69728 1.07801 1.30646 1.31569 1.26105 0.94995 1.02173 0.91910 0.86070 0.80371 0.79361 0.79769 1.18831 1.19811 1.18151 1.19681 0.96917 0.90036 1.38905 0.89002 1.18515 0.91419 0.93995 0.89209 1.22417 1.02186 0.87141 1.05072 1.66536 1.06041 1.31646 1.11141 1.16816 0.97487 0.82296 1.07878 1.42147 1.07726 1.07526 1.45828 1.24853 0.84343 0.94426 1.05688 1.70166 1.27459 1.05641 1.18512 1.21739 0.88639 0.99402 1.10332 1.20686 0.95664 0.86773 1.06151 1.19972 0.91107 1.02503 0.94200 1.21445 0.91912 0.91879 0.95687 0.89670 1.58725 1.61570 1.03236 1.11826 1.23215 0.99637 1.00008 0.81269 1.86455 1.34816 1.94033 1.22466 1.21118 0.90997 0.94885 0.98039 1.98304 1.37965 1.98678 1.71231 1.21362 0.97825 0.95479 1.00033 0.89735 0.84170 0.79028 0.82472 0.89469 0.90103 0.84931 0.84558 0.93698 0.93438 0.77703 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.23 10.85 55.55 0.60 -16.62 16 2 C 0.07 1.47 5.25 -17.34 -0.09 1.38 16 3 Si 0.92 15.88 29.58 -169.99 -5.03 10.85 16 4 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 5 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 6 H -0.26 -4.38 7.11 56.52 0.40 -3.97 16 7 C -0.43 -9.34 9.08 -37.81 -0.34 -9.68 16 8 H 0.09 1.87 7.88 -52.49 -0.41 1.46 16 9 C 0.07 1.66 5.57 -106.66 -0.59 1.07 16 10 C 0.00 -0.07 10.98 -16.74 -0.18 -0.25 16 11 N -0.44 -9.49 8.97 -11.60 -0.10 -9.60 16 12 C 0.18 3.84 6.69 -154.31 -1.03 2.81 16 13 N -0.36 -7.17 2.74 -59.48 -0.16 -7.34 16 14 C 0.19 3.80 10.67 -89.51 -0.96 2.84 16 15 N -0.50 -10.05 11.24 -14.44 -0.16 -10.21 16 16 C -0.05 -0.98 11.78 -17.81 -0.21 -1.19 16 17 C 0.02 0.43 5.87 -81.47 -0.48 -0.04 16 18 C -0.04 -0.59 5.18 -27.88 -0.14 -0.73 16 19 C 0.10 1.45 3.03 -67.71 -0.21 1.24 16 20 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 21 N -0.82 -12.95 8.94 -4.66 -0.04 -12.99 16 22 C 0.04 0.44 6.64 37.16 0.25 0.68 16 23 O -0.57 -6.38 13.33 -35.23 -0.47 -6.85 16 24 C -0.02 -0.42 6.27 -39.61 -0.25 -0.67 16 25 Cl -0.09 -1.79 26.42 -51.86 -1.37 -3.16 16 26 C -0.12 -2.74 8.50 -38.97 -0.33 -3.07 16 27 H 0.29 5.90 8.30 -40.82 -0.34 5.56 16 28 H 0.14 2.67 8.06 -52.48 -0.42 2.25 16 29 H 0.19 3.61 7.55 -52.49 -0.40 3.22 16 30 H 0.16 2.39 8.06 -52.49 -0.42 1.97 16 31 H 0.09 1.47 6.67 -51.93 -0.35 1.12 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.34 5.61 9.00 -39.29 -0.35 5.26 16 34 H 0.34 5.12 8.75 -39.29 -0.34 4.78 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.38 2.48 9.12 45.56 0.42 2.90 16 38 H 0.14 3.39 6.25 -52.49 -0.33 3.06 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -26.08 341.09 -9.60 -35.68 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -3.44 Total: 20.71 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -4.57 Total: -5.63 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.13 Total: -56.75 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.47 Total: -6.85 kcal Atomic # 14 Polarization: 15.88 SS G_CDS: -5.03 Total: 10.85 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -1.37 Total: -3.16 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -26.08 -9.60 -35.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158209326.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.502 kcal (2) G-P(sol) polarization free energy of solvation -26.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds