Wall clock time and date at job start Fri Apr 10 2020 18:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86809 * 119.99911 * 2 1 4 4 H 1.48500 * 109.47081 * 270.00556 * 3 2 1 5 5 H 1.48500 * 109.46629 * 30.00552 * 3 2 1 6 6 H 1.48502 * 109.46896 * 150.00198 * 3 2 1 7 7 C 1.39931 * 120.00574 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00284 * 192.37741 * 7 2 1 9 9 C 1.41224 * 119.99704 * 12.36847 * 7 2 1 10 10 C 1.40823 * 120.58858 * 207.06398 * 9 7 2 11 11 N 1.31440 * 120.37472 * 179.70458 * 10 9 7 12 12 C 1.32618 * 121.76985 * 0.56686 * 11 10 9 13 13 N 1.39391 * 119.41338 * 179.70625 * 12 11 10 14 14 C 1.36010 * 126.49132 * 130.00175 * 13 12 11 15 15 N 1.30474 * 108.54233 * 180.23396 * 14 13 12 16 16 C 1.34176 * 109.38239 * 359.76838 * 15 14 13 17 17 C 1.34617 * 108.23031 * 359.97438 * 16 15 14 18 18 C 1.50703 * 126.58302 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.47404 * 85.02288 * 18 17 16 20 20 H 1.09003 * 109.47127 * 305.00347 * 19 18 17 21 21 N 1.46904 * 109.46976 * 64.99880 * 19 18 17 22 22 C 1.52999 * 109.47264 * 184.99854 * 19 18 17 23 23 O 1.42904 * 109.46990 * 175.00307 * 22 19 18 24 24 C 1.39528 * 121.16788 * 359.43341 * 12 11 10 25 25 Cl 1.73597 * 120.25925 * 180.29858 * 24 12 11 26 26 C 1.36823 * 119.48427 * 0.26961 * 24 12 11 27 27 H 0.96992 * 120.00311 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.80915 * 0.02562 * 10 9 7 29 29 H 1.07994 * 125.73188 * 359.97438 * 14 13 12 30 30 H 1.07997 * 125.88676 * 180.02562 * 16 15 14 31 31 H 1.08997 * 109.46933 * 205.02687 * 18 17 16 32 32 H 1.09005 * 109.47165 * 325.02536 * 18 17 16 33 33 H 1.00903 * 110.99981 * 60.00003 * 21 19 18 34 34 H 1.00901 * 110.99985 * 183.95484 * 21 19 18 35 35 H 1.08993 * 109.47463 * 294.99995 * 22 19 18 36 36 H 1.08997 * 109.46911 * 55.00405 * 22 19 18 37 37 H 0.96695 * 113.99974 * 180.02562 * 23 22 19 38 38 H 1.07996 * 120.81400 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4898 2.0466 -1.4001 5 1 1.4399 2.6526 0.7002 6 1 3.5401 1.4402 0.7000 7 6 2.0082 -1.2118 -0.0005 8 1 3.0694 -1.2227 0.1999 9 6 1.3268 -2.4205 -0.2631 10 6 1.8027 -3.6392 0.2578 11 7 1.1619 -4.7610 0.0157 12 6 0.0638 -4.7915 -0.7273 13 7 -0.5732 -6.0097 -0.9578 14 6 -1.8970 -6.2743 -0.7923 15 7 -2.1126 -7.5231 -1.1027 16 6 -0.9577 -8.0945 -1.4770 17 6 0.0157 -7.1680 -1.3980 18 6 1.4736 -7.3670 -1.7236 19 6 1.6920 -7.1727 -3.2254 20 1 1.0285 -7.8378 -3.7781 21 7 1.3999 -5.7789 -3.5863 22 6 3.1459 -7.4961 -3.5754 23 8 3.3213 -7.4277 -4.9920 24 6 -0.4683 -3.6249 -1.2776 25 17 -1.9114 -3.6910 -2.2403 26 6 0.1558 -2.4284 -1.0522 27 1 -0.4850 0.8400 0.0004 28 1 2.6965 -3.6515 0.8640 29 1 -2.6437 -5.5702 -0.4559 30 1 -0.8311 -9.1207 -1.7888 31 1 2.0713 -6.6409 -1.1725 32 1 1.7749 -8.3755 -1.4401 33 1 2.0023 -5.1421 -3.0867 34 1 1.4743 -5.6403 -4.5830 35 1 3.8050 -6.7748 -3.0925 36 1 3.3886 -8.5001 -3.2273 37 1 4.2215 -7.6223 -5.2866 38 1 -0.2371 -1.5125 -1.4681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158209326.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:56 Heat of formation + Delta-G solvation = 11.648192 kcal Electronic energy + Delta-G solvation = -25058.899891 eV Core-core repulsion = 21347.939038 eV Total energy + Delta-G solvation = -3710.960852 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.99454 -40.32912 -38.68806 -37.36649 -36.32684 -35.92268 -34.31794 -32.61056 -31.93694 -30.96447 -28.96764 -27.35784 -26.44582 -24.28074 -23.85308 -22.10573 -21.92653 -20.90888 -19.49710 -19.00016 -18.14218 -17.60456 -17.05158 -16.99017 -16.09678 -15.96485 -15.77964 -15.68283 -15.41362 -14.95104 -14.69557 -14.41886 -14.15946 -13.89620 -13.76612 -13.58002 -13.31880 -13.05198 -12.96033 -12.80458 -12.70274 -12.55545 -12.10109 -12.00289 -11.73553 -11.43833 -11.02731 -10.97359 -10.88209 -10.21807 -10.14976 -9.52353 -9.38017 -9.06801 -8.81823 -6.57036 0.29974 0.74444 1.27371 1.34320 1.42471 1.54821 1.56150 1.99385 2.14929 2.28198 2.56973 3.22777 3.41185 3.66841 3.80712 3.85713 4.13390 4.18445 4.23651 4.40228 4.47641 4.51994 4.59146 4.61868 4.65521 4.84768 4.88059 4.93703 5.07135 5.15888 5.22214 5.58049 5.65394 5.78072 5.98913 6.22979 6.30164 6.47890 6.56229 6.58573 6.64597 6.84009 7.20403 7.38223 8.10791 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.004683 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.283975 B = 5978.033414 C = 7077.868247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.035 3.965 3 Si 0.989 3.011 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.446 4.446 8 H 0.104 0.896 9 C 0.056 3.944 10 C -0.004 4.004 11 N -0.447 5.447 12 C 0.181 3.819 13 N -0.363 5.363 14 C 0.170 3.830 15 N -0.512 5.512 16 C -0.061 4.061 17 C 0.019 3.981 18 C -0.035 4.035 19 C 0.107 3.893 20 H 0.078 0.922 21 N -0.838 5.838 22 C 0.049 3.951 23 O -0.589 6.589 24 C -0.024 4.024 25 Cl -0.080 7.080 26 C -0.137 4.137 27 H 0.297 0.703 28 H 0.161 0.839 29 H 0.195 0.805 30 H 0.188 0.812 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.330 0.670 34 H 0.343 0.657 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.397 0.603 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.183 -5.688 -4.380 10.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.474 4.474 8 H 0.122 0.878 9 C 0.050 3.950 10 C -0.169 4.169 11 N -0.156 5.156 12 C -0.044 4.044 13 N -0.040 5.040 14 C -0.111 4.111 15 N -0.231 5.231 16 C -0.208 4.208 17 C -0.097 4.097 18 C -0.074 4.074 19 C -0.005 4.005 20 H 0.096 0.904 21 N -0.367 5.367 22 C -0.031 4.031 23 O -0.397 6.397 24 C -0.055 4.055 25 Cl -0.051 7.051 26 C -0.163 4.163 27 H 0.108 0.892 28 H 0.178 0.822 29 H 0.212 0.788 30 H 0.205 0.795 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.142 0.858 34 H 0.156 0.844 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.247 0.753 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.038 -6.609 -3.730 9.109 hybrid contribution 1.693 2.020 -0.686 2.723 sum 6.731 -4.589 -4.416 9.266 Atomic orbital electron populations 1.69785 1.09252 1.31792 1.32112 1.26919 0.95520 1.05062 0.90901 0.85052 0.79227 0.75142 0.79638 1.18730 1.19660 1.17287 1.20010 0.97601 0.90435 1.39311 0.87814 1.18773 0.91677 0.94927 0.89582 1.22723 1.02620 0.86723 1.04836 1.66600 1.06152 1.31639 1.11239 1.16873 0.97339 0.82684 1.07499 1.42220 1.07842 1.07657 1.46323 1.24999 0.84650 0.94833 1.06639 1.70166 1.28468 1.05681 1.18744 1.22269 0.87923 1.00685 1.09915 1.21296 0.97262 0.85960 1.05158 1.20071 0.88756 1.03735 0.94801 1.21369 0.93813 0.90696 0.94667 0.90401 1.58739 1.61836 1.04219 1.11864 1.22988 0.97359 1.01205 0.81552 1.86399 1.36845 1.94223 1.22251 1.21179 0.91338 0.94844 0.98141 1.98297 1.37261 1.98663 1.70884 1.21277 0.98687 0.95297 1.01024 0.89173 0.82234 0.78783 0.79535 0.91054 0.87063 0.85760 0.84414 0.93735 0.91152 0.75328 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -36.21 10.85 21.82 0.24 -35.97 16 2 C 0.03 1.45 5.25 85.25 0.45 1.90 16 3 Si 0.99 31.77 29.58 68.60 2.03 33.80 16 4 H -0.26 -8.35 7.11 99.48 0.71 -7.64 16 5 H -0.27 -8.60 7.11 99.48 0.71 -7.89 16 6 H -0.25 -7.63 7.11 99.48 0.71 -6.93 16 7 C -0.45 -19.40 9.08 23.41 0.21 -19.18 16 8 H 0.10 4.13 7.88 -2.91 -0.02 4.11 16 9 C 0.06 2.53 5.57 -21.18 -0.12 2.41 16 10 C 0.00 -0.17 10.98 85.38 0.94 0.77 16 11 N -0.45 -18.97 8.97 -190.60 -1.71 -20.68 16 12 C 0.18 7.72 6.69 132.96 0.89 8.61 16 13 N -0.36 -14.52 2.74 -342.08 -0.94 -15.46 16 14 C 0.17 6.83 10.67 179.96 1.92 8.75 16 15 N -0.51 -20.20 11.24 -199.61 -2.24 -22.45 16 16 C -0.06 -2.13 11.78 83.50 0.98 -1.15 16 17 C 0.02 0.67 5.87 40.89 0.24 0.91 16 18 C -0.03 -0.99 5.18 29.85 0.15 -0.84 16 19 C 0.11 2.81 3.03 44.91 0.14 2.94 16 20 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 21 N -0.84 -25.88 8.94 -168.67 -1.51 -27.39 16 22 C 0.05 0.98 6.64 71.98 0.48 1.46 16 23 O -0.59 -11.80 13.33 -148.98 -1.99 -13.78 16 24 C -0.02 -1.06 6.27 22.25 0.14 -0.92 16 25 Cl -0.08 -3.19 26.42 -2.72 -0.07 -3.26 16 26 C -0.14 -6.33 8.50 22.67 0.19 -6.14 16 27 H 0.30 12.12 8.30 -92.71 -0.77 11.35 16 28 H 0.16 5.93 8.06 -2.91 -0.02 5.91 16 29 H 0.20 7.43 7.55 -2.91 -0.02 7.41 16 30 H 0.19 5.18 8.06 -2.91 -0.02 5.15 16 31 H 0.07 2.30 6.67 -2.39 -0.02 2.28 16 32 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 33 H 0.33 10.95 9.00 -89.69 -0.81 10.14 16 34 H 0.34 10.16 8.75 -89.69 -0.78 9.37 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.40 4.23 9.12 -74.06 -0.68 3.55 16 38 H 0.13 6.31 6.25 -2.91 -0.02 6.29 16 Total: -1.00 -55.30 341.09 -0.70 -56.00 By element: Atomic # 1 Polarization: 50.80 SS G_CDS: -1.12 Total: 49.68 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 6.61 Total: -0.48 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -6.16 Total: -121.95 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -1.99 Total: -13.78 kcal Atomic # 14 Polarization: 31.77 SS G_CDS: 2.03 Total: 33.80 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.07 Total: -3.26 kcal Total: -55.30 -0.70 -56.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158209326.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.644 kcal (2) G-P(sol) polarization free energy of solvation -55.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds