Wall clock time and date at job start Fri Apr 10 2020 18:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 N 1.65600 * 107.21522 * 179.72073 * 9 7 2 13 13 C 1.47261 * 135.91784 * 269.62520 * 12 9 7 14 14 C 1.52806 * 87.59112 * 153.82311 * 13 12 9 15 15 C 1.52514 * 121.66761 * 149.66550 * 14 13 12 16 16 C 1.53711 * 83.21574 * 102.70023 * 15 14 13 17 17 N 1.46395 * 122.12630 * 261.20298 * 14 13 12 18 18 C 1.46901 * 111.00216 * 10.16052 * 17 14 13 19 19 C 1.50696 * 109.47422 * 170.00052 * 18 17 14 20 20 C 1.38237 * 119.99873 * 269.72674 * 19 18 17 21 21 C 1.38235 * 120.00409 * 179.76460 * 20 19 18 22 22 C 1.38237 * 119.99394 * 0.48282 * 21 20 19 23 23 C 1.38236 * 120.00279 * 359.79120 * 22 21 20 24 24 C 1.38230 * 119.99930 * 359.95192 * 23 22 21 25 25 C 1.47257 * 135.91807 * 90.00019 * 12 9 7 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.08997 * 113.51549 * 268.48095 * 13 12 9 28 28 H 1.09004 * 113.51175 * 39.06521 * 13 12 9 29 29 H 1.09000 * 114.22444 * 216.25510 * 15 14 13 30 30 H 1.09000 * 114.22653 * 349.14799 * 15 14 13 31 31 H 1.08999 * 113.42962 * 270.24367 * 16 15 14 32 32 H 1.09003 * 113.47164 * 139.94147 * 16 15 14 33 33 H 1.09003 * 109.46547 * 289.99530 * 18 17 14 34 34 H 1.08997 * 109.47064 * 49.99437 * 18 17 14 35 35 H 1.08005 * 119.99888 * 359.97438 * 20 19 18 36 36 H 1.07990 * 120.00467 * 180.24802 * 21 20 19 37 37 H 1.08001 * 119.99678 * 179.76719 * 22 21 20 38 38 H 1.08004 * 120.00306 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.00273 * 179.97438 * 24 23 22 40 40 H 1.08999 * 113.51557 * 320.94219 * 25 12 9 41 41 H 1.09002 * 113.51614 * 91.52599 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 7 2.2481 -3.9354 -0.0117 13 6 2.9618 -4.7118 -1.0396 14 6 4.0770 -4.9201 -0.0159 15 6 4.9450 -6.1741 -0.0216 16 6 5.9761 -5.2367 -0.6701 17 7 5.2928 -4.1046 -0.0124 18 6 5.1639 -2.9633 -0.9283 19 6 6.3193 -2.0187 -0.7196 20 6 6.2142 -0.9903 0.1983 21 6 7.2757 -0.1267 0.3934 22 6 8.4388 -0.2853 -0.3367 23 6 8.5420 -1.3102 -1.2586 24 6 7.4823 -2.1770 -1.4498 25 6 2.9665 -4.7164 1.0093 26 1 -0.4850 0.8401 -0.0004 27 1 2.4519 -5.6332 -1.3207 28 1 3.2655 -4.1169 -1.9010 29 1 5.2247 -6.5289 0.9704 30 1 4.5839 -6.9651 -0.6789 31 1 5.9124 -5.2085 -1.7579 32 1 6.9933 -5.3960 -0.3122 33 1 5.1689 -3.3215 -1.9578 34 1 4.2277 -2.4419 -0.7295 35 1 5.3038 -0.8637 0.7655 36 1 7.1950 0.6742 1.1133 37 1 9.2669 0.3917 -0.1870 38 1 9.4505 -1.4339 -1.8293 39 1 7.5627 -2.9775 -2.1704 40 1 3.2741 -4.1255 1.8720 41 1 2.4579 -5.6392 1.2886 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192960666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:09 Heat of formation + Delta-G solvation = 18.717856 kcal Electronic energy + Delta-G solvation = -26012.011149 eV Core-core repulsion = 22406.940910 eV Total energy + Delta-G solvation = -3605.070239 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.21747 -38.88968 -36.23346 -35.22520 -33.99110 -33.11322 -32.67139 -30.72079 -28.89476 -26.70767 -26.17595 -25.83852 -24.37717 -22.67579 -22.16676 -20.93199 -18.85986 -18.02056 -17.43961 -16.75160 -16.45173 -15.78717 -15.59923 -15.30803 -14.92441 -14.81595 -14.58669 -14.18719 -13.98396 -13.35242 -13.16922 -13.04113 -12.84291 -12.57401 -12.30909 -12.04780 -11.83534 -11.56650 -11.44452 -11.39520 -11.25471 -11.01672 -10.86798 -10.69721 -10.45168 -10.37870 -10.33902 -10.24185 -9.91444 -9.28317 -8.95416 -8.80679 -8.73040 -8.49660 -8.29620 -6.72839 -5.34917 1.49815 1.58341 2.13980 3.03675 3.12407 3.19714 3.78453 4.02072 4.15945 4.33270 4.41691 4.61012 4.71740 4.90860 4.99419 5.09172 5.14446 5.19631 5.25174 5.37856 5.47059 5.58697 5.62130 5.65894 5.72946 5.75983 5.79233 5.82984 5.84801 5.89265 6.01277 6.07223 6.16907 6.20211 6.25404 6.53540 6.61722 6.69508 6.85901 6.99104 7.17814 7.23430 7.23774 7.36904 7.96967 8.86272 10.21089 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.010325 B = 0.006890 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.237711 B = 4062.667153 C = 6300.293820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.135 3.865 3 Si 0.914 3.086 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.014 5.014 8 H 0.105 0.895 9 S 2.731 3.269 10 O -0.999 6.999 11 O -1.001 7.001 12 N -1.044 6.044 13 C 0.127 3.873 14 C 0.017 3.983 15 C -0.128 4.128 16 C -0.002 4.002 17 N -0.431 5.431 18 C 0.041 3.959 19 C -0.064 4.064 20 C -0.095 4.095 21 C -0.122 4.122 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.115 4.115 25 C 0.146 3.854 26 H 0.291 0.709 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.895 -7.583 -1.934 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.083 4.083 3 Si 0.737 3.263 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.148 5.148 8 H 0.123 0.877 9 S 2.834 3.166 10 O -0.990 6.990 11 O -0.992 6.992 12 N -0.879 5.879 13 C -0.001 4.001 14 C -0.076 4.076 15 C -0.167 4.167 16 C -0.131 4.131 17 N -0.152 5.152 18 C -0.086 4.086 19 C -0.064 4.064 20 C -0.114 4.114 21 C -0.140 4.140 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.133 4.133 25 C 0.019 3.981 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.099 0.901 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.834 -7.127 -1.321 16.510 hybrid contribution 0.547 1.213 -0.829 1.568 sum 15.380 -5.914 -2.151 16.618 Atomic orbital electron populations 1.69902 1.06805 1.30678 1.40176 1.24724 0.94418 1.00693 0.88444 0.86219 0.80882 0.80535 0.78618 1.18041 1.19622 1.19561 1.30615 1.06019 1.11386 1.66734 0.87724 1.00051 0.71270 0.72537 0.72724 1.93361 1.72248 1.87443 1.45951 1.93358 1.72304 1.87529 1.46014 1.60746 1.62034 1.50676 1.14473 1.22469 0.89622 0.95727 0.92294 1.23675 0.91158 0.93589 0.99207 1.22964 0.96037 0.95557 1.02142 1.23866 0.99492 0.91855 0.97895 1.68653 1.06883 1.01691 1.37977 1.21879 0.98603 0.92915 0.95184 1.19688 0.94820 0.95750 0.96155 1.21246 0.98988 0.94016 0.97101 1.21157 0.93582 0.99403 0.99831 1.21076 0.97825 0.98456 0.97135 1.21017 0.98522 0.95946 0.98986 1.20975 0.93211 0.99292 0.99846 1.22123 0.88176 0.95184 0.92613 0.89896 0.89850 0.90743 0.88473 0.90176 0.91317 0.89750 0.92657 0.87486 0.85390 0.86302 0.86587 0.86562 0.86691 0.90110 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.94 13.19 55.43 0.73 -24.21 16 2 C 0.14 3.76 5.46 -17.82 -0.10 3.66 16 3 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -1.01 -27.61 9.55 30.60 0.29 -27.31 16 8 H 0.10 2.60 5.72 -52.49 -0.30 2.30 16 9 S 2.73 73.57 5.55 -107.50 -0.60 72.98 16 10 O -1.00 -29.85 18.02 -57.17 -1.03 -30.88 16 11 O -1.00 -29.68 18.02 -57.17 -1.03 -30.71 16 12 N -1.04 -21.17 3.72 -124.87 -0.46 -21.64 16 13 C 0.13 1.99 7.74 -7.60 -0.06 1.94 16 14 C 0.02 0.23 1.41 -139.83 -0.20 0.04 16 15 C -0.13 -1.26 8.27 -26.61 -0.22 -1.48 16 16 C 0.00 -0.03 7.72 -9.28 -0.07 -0.10 16 17 N -0.43 -6.08 6.34 -236.95 -1.50 -7.59 16 18 C 0.04 0.64 3.93 -4.98 -0.02 0.62 16 19 C -0.06 -0.98 5.46 -104.62 -0.57 -1.55 16 20 C -0.10 -1.55 9.70 -39.58 -0.38 -1.94 16 21 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 22 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 23 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 24 C -0.11 -1.49 9.70 -39.58 -0.38 -1.88 16 25 C 0.15 2.37 8.63 -7.76 -0.07 2.30 16 26 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.07 1.16 6.57 -51.93 -0.34 0.82 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.66 7.40 -51.93 -0.38 0.27 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.77 6.61 -51.93 -0.34 0.42 16 34 H 0.11 2.01 4.91 -51.93 -0.25 1.75 16 35 H 0.13 2.27 7.95 -52.48 -0.42 1.86 16 36 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -35.56 351.96 -11.99 -47.55 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.40 Total: 5.34 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: -2.97 Total: -31.70 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -1.24 Total: -53.43 kcal Atomic # 8 Polarization: -59.53 SS G_CDS: -2.06 Total: -61.59 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 73.57 SS G_CDS: -0.60 Total: 72.98 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.56 -11.99 -47.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.268 kcal (2) G-P(sol) polarization free energy of solvation -35.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds