Wall clock time and date at job start Fri Apr 10 2020 18:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 N 1.65600 * 107.21522 * 179.72073 * 9 7 2 13 13 C 1.47261 * 135.91784 * 269.62520 * 12 9 7 14 14 C 1.52806 * 87.59112 * 153.82311 * 13 12 9 15 15 C 1.52514 * 121.66761 * 149.66550 * 14 13 12 16 16 C 1.53711 * 83.21574 * 102.70023 * 15 14 13 17 17 N 1.46395 * 122.12630 * 261.20298 * 14 13 12 18 18 C 1.46901 * 111.00216 * 10.16052 * 17 14 13 19 19 C 1.50696 * 109.47422 * 170.00052 * 18 17 14 20 20 C 1.38237 * 119.99873 * 269.72674 * 19 18 17 21 21 C 1.38235 * 120.00409 * 179.76460 * 20 19 18 22 22 C 1.38237 * 119.99394 * 0.48282 * 21 20 19 23 23 C 1.38236 * 120.00279 * 359.79120 * 22 21 20 24 24 C 1.38230 * 119.99930 * 359.95192 * 23 22 21 25 25 C 1.47257 * 135.91807 * 90.00019 * 12 9 7 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.08997 * 113.51549 * 268.48095 * 13 12 9 28 28 H 1.09004 * 113.51175 * 39.06521 * 13 12 9 29 29 H 1.09000 * 114.22444 * 216.25510 * 15 14 13 30 30 H 1.09000 * 114.22653 * 349.14799 * 15 14 13 31 31 H 1.08999 * 113.42962 * 270.24367 * 16 15 14 32 32 H 1.09003 * 113.47164 * 139.94147 * 16 15 14 33 33 H 1.09003 * 109.46547 * 289.99530 * 18 17 14 34 34 H 1.08997 * 109.47064 * 49.99437 * 18 17 14 35 35 H 1.08005 * 119.99888 * 359.97438 * 20 19 18 36 36 H 1.07990 * 120.00467 * 180.24802 * 21 20 19 37 37 H 1.08001 * 119.99678 * 179.76719 * 22 21 20 38 38 H 1.08004 * 120.00306 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.00273 * 179.97438 * 24 23 22 40 40 H 1.08999 * 113.51557 * 320.94219 * 25 12 9 41 41 H 1.09002 * 113.51614 * 91.52599 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 7 2.2481 -3.9354 -0.0117 13 6 2.9618 -4.7118 -1.0396 14 6 4.0770 -4.9201 -0.0159 15 6 4.9450 -6.1741 -0.0216 16 6 5.9761 -5.2367 -0.6701 17 7 5.2928 -4.1046 -0.0124 18 6 5.1639 -2.9633 -0.9283 19 6 6.3193 -2.0187 -0.7196 20 6 6.2142 -0.9903 0.1983 21 6 7.2757 -0.1267 0.3934 22 6 8.4388 -0.2853 -0.3367 23 6 8.5420 -1.3102 -1.2586 24 6 7.4823 -2.1770 -1.4498 25 6 2.9665 -4.7164 1.0093 26 1 -0.4850 0.8401 -0.0004 27 1 2.4519 -5.6332 -1.3207 28 1 3.2655 -4.1169 -1.9010 29 1 5.2247 -6.5289 0.9704 30 1 4.5839 -6.9651 -0.6789 31 1 5.9124 -5.2085 -1.7579 32 1 6.9933 -5.3960 -0.3122 33 1 5.1689 -3.3215 -1.9578 34 1 4.2277 -2.4419 -0.7295 35 1 5.3038 -0.8637 0.7655 36 1 7.1950 0.6742 1.1133 37 1 9.2669 0.3917 -0.1870 38 1 9.4505 -1.4339 -1.8293 39 1 7.5627 -2.9775 -2.1704 40 1 3.2741 -4.1255 1.8720 41 1 2.4579 -5.6392 1.2886 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192960666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:08 Heat of formation + Delta-G solvation = -9.760412 kcal Electronic energy + Delta-G solvation = -26013.246059 eV Core-core repulsion = 22406.940910 eV Total energy + Delta-G solvation = -3606.305149 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.32485 -39.92825 -37.48993 -37.46024 -36.23060 -35.24632 -33.70778 -31.74304 -29.89714 -28.35516 -28.04973 -27.11908 -25.41106 -23.73707 -23.20259 -21.97855 -20.81980 -19.23857 -19.15198 -18.36161 -17.76806 -17.17936 -16.98032 -16.68833 -16.34311 -16.18979 -16.06504 -15.67762 -15.52277 -14.56291 -14.51494 -14.21835 -14.04946 -14.01419 -13.60938 -13.57820 -13.29620 -13.11540 -13.07201 -12.81194 -12.61811 -12.55338 -12.38527 -12.29244 -12.21768 -11.98197 -11.71062 -11.44523 -11.33869 -11.29951 -10.94659 -9.92186 -9.80449 -9.76534 -9.53758 -8.81932 -7.54241 0.16562 0.47230 0.53946 1.23769 1.25314 1.43449 2.12957 2.50052 2.72617 2.79630 3.12094 3.28451 3.60625 3.76774 3.84983 3.89356 3.96398 4.03425 4.17782 4.24611 4.30016 4.31481 4.49446 4.51440 4.60588 4.63626 4.69562 4.74357 4.76190 4.82014 4.91656 5.11153 5.13831 5.18827 5.25490 5.31911 5.40040 5.48530 5.57352 5.61642 5.65193 5.79942 5.90965 6.14145 6.21020 6.72210 8.14248 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.010325 B = 0.006890 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.237711 B = 4062.667153 C = 6300.293820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.076 3.924 3 Si 0.979 3.021 4 H -0.246 1.246 5 H -0.258 1.258 6 H -0.257 1.257 7 C -1.028 5.028 8 H 0.117 0.883 9 S 2.738 3.262 10 O -1.044 7.044 11 O -1.042 7.042 12 N -1.058 6.058 13 C 0.121 3.879 14 C 0.028 3.972 15 C -0.104 4.104 16 C 0.001 3.999 17 N -0.452 5.452 18 C 0.046 3.954 19 C -0.080 4.080 20 C -0.130 4.130 21 C -0.134 4.134 22 C -0.126 4.126 23 C -0.121 4.121 24 C -0.115 4.115 25 C 0.135 3.865 26 H 0.299 0.701 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.139 0.861 40 H 0.063 0.937 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.839 -8.699 -2.999 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.797 3.203 4 H -0.168 1.168 5 H -0.182 1.182 6 H -0.181 1.181 7 C -1.162 5.162 8 H 0.135 0.865 9 S 2.843 3.157 10 O -1.034 7.034 11 O -1.032 7.032 12 N -0.897 5.897 13 C -0.006 4.006 14 C -0.066 4.066 15 C -0.142 4.142 16 C -0.127 4.127 17 N -0.173 5.173 18 C -0.082 4.082 19 C -0.081 4.081 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.133 4.133 25 C 0.009 3.991 26 H 0.109 0.891 27 H 0.130 0.870 28 H 0.088 0.912 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.145 0.855 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.157 0.843 40 H 0.082 0.918 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 18.771 -8.261 -2.386 20.647 hybrid contribution -0.586 1.452 -0.486 1.639 sum 18.185 -6.809 -2.872 19.629 Atomic orbital electron populations 1.69991 1.08690 1.32252 1.41696 1.25919 0.95267 1.04998 0.87542 0.85264 0.79898 0.75607 0.79574 1.16834 1.18176 1.18148 1.30930 1.06830 1.12102 1.66296 0.86465 0.99307 0.71764 0.73407 0.71242 1.93288 1.74388 1.88376 1.47388 1.93287 1.74319 1.88417 1.47201 1.60150 1.61134 1.50389 1.18044 1.22870 0.90027 0.95841 0.91836 1.23588 0.90469 0.96324 0.96189 1.22998 0.93417 0.94319 1.03514 1.23971 1.00109 0.89940 0.98709 1.68678 1.07537 1.02403 1.38706 1.21735 0.96920 0.93414 0.96098 1.19780 0.95849 0.95650 0.96783 1.21181 0.98875 0.96196 0.98606 1.21344 0.93870 0.99355 1.00597 1.21442 0.97684 0.98925 0.96313 1.21463 0.99270 0.94771 0.98343 1.21237 0.92406 1.00130 0.99569 1.22555 0.89189 0.95141 0.92180 0.89064 0.86963 0.91174 0.87164 0.87208 0.89862 0.88402 0.91328 0.91672 0.88664 0.85514 0.83618 0.83090 0.84273 0.91840 0.87266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.08 13.19 21.45 0.28 -54.79 16 2 C 0.08 4.36 5.46 84.66 0.46 4.82 16 3 Si 0.98 43.13 29.54 68.60 2.03 45.16 16 4 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 7 C -1.03 -58.80 9.55 67.74 0.65 -58.15 16 8 H 0.12 6.21 5.72 -2.91 -0.02 6.19 16 9 S 2.74 155.35 5.55 -56.49 -0.31 155.04 16 10 O -1.04 -66.00 18.02 -128.00 -2.31 -68.30 16 11 O -1.04 -64.96 18.02 -128.00 -2.31 -67.27 16 12 N -1.06 -44.09 3.72 -548.99 -2.04 -46.13 16 13 C 0.12 3.69 7.74 83.66 0.65 4.33 16 14 C 0.03 0.73 1.41 -0.44 0.00 0.73 16 15 C -0.10 -1.59 8.27 30.67 0.25 -1.34 16 16 C 0.00 0.01 7.72 82.34 0.64 0.65 16 17 N -0.45 -12.12 6.34 -903.57 -5.73 -17.85 16 18 C 0.05 1.42 3.93 85.56 0.34 1.75 16 19 C -0.08 -2.41 5.46 -19.87 -0.11 -2.52 16 20 C -0.13 -4.35 9.70 22.27 0.22 -4.13 16 21 C -0.13 -3.70 10.05 22.27 0.22 -3.47 16 22 C -0.13 -2.75 10.05 22.27 0.22 -2.52 16 23 C -0.12 -2.44 10.05 22.27 0.22 -2.21 16 24 C -0.12 -2.67 9.70 22.27 0.22 -2.45 16 25 C 0.13 4.37 8.63 83.56 0.72 5.09 16 26 H 0.30 16.49 8.31 -92.70 -0.77 15.72 16 27 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.07 2.17 6.57 -2.38 -0.02 2.16 16 29 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 30 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.23 7.40 -2.39 -0.02 1.21 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.83 6.61 -2.39 -0.02 1.81 16 34 H 0.06 2.56 4.91 -2.39 -0.01 2.55 16 35 H 0.10 3.68 7.95 -2.91 -0.02 3.66 16 36 H 0.13 3.13 8.06 -2.92 -0.02 3.10 16 37 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 38 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 39 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 41 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -83.52 351.96 -4.65 -88.17 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 1.04 Total: 25.41 kcal Atomic # 6 Polarization: -64.13 SS G_CDS: 4.70 Total: -59.44 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -7.49 Total: -118.77 kcal Atomic # 8 Polarization: -130.95 SS G_CDS: -4.61 Total: -135.57 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 155.35 SS G_CDS: -0.31 Total: 155.04 kcal Total: -83.52 -4.65 -88.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.412 kcal (2) G-P(sol) polarization free energy of solvation -83.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds