Wall clock time and date at job start Fri Apr 10 2020 18:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65600 * 120.00125 * 2 1 4 4 O 1.42102 * 106.40002 * 311.46305 * 3 2 1 5 5 O 1.42099 * 106.40574 * 178.53750 * 3 2 1 6 6 N 1.65608 * 107.21755 * 64.99728 * 3 2 1 7 7 C 1.46494 * 119.99583 * 65.00217 * 6 3 2 8 8 C 1.50698 * 109.47119 * 165.00070 * 7 6 3 9 9 O 1.21284 * 119.99893 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00448 * 179.97438 * 8 7 6 11 11 C 1.46506 * 120.00375 * 180.02562 * 10 8 7 12 12 H 1.08993 * 110.88414 * 34.29431 * 11 10 8 13 13 C 1.54916 * 110.99952 * 270.41714 * 11 10 8 14 14 N 1.47472 * 104.80846 * 204.94493 * 13 11 10 15 15 C 1.36931 * 125.62931 * 204.04929 * 14 13 11 16 16 H 1.08001 * 120.00223 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00051 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00140 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00023 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47508 * 89.99329 * 19 17 15 21 21 H 1.48502 * 109.47209 * 209.99896 * 19 17 15 22 22 H 1.48506 * 109.47025 * 329.99612 * 19 17 15 23 23 C 1.47021 * 108.71928 * 24.07477 * 14 13 11 24 24 C 1.54321 * 107.27562 * 358.97031 * 23 14 13 25 25 H 1.08996 * 110.87120 * 219.37215 * 24 23 14 26 26 O 1.42905 * 110.71824 * 96.17329 * 24 23 14 27 27 H 1.09005 * 109.46747 * 60.00070 * 1 2 3 28 28 H 1.08997 * 109.46757 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47215 * 299.99976 * 1 2 3 30 30 H 0.96998 * 120.00273 * 180.02562 * 2 1 3 31 31 H 0.96995 * 120.00068 * 244.72754 * 6 3 2 32 32 H 1.09005 * 109.47465 * 285.00056 * 7 6 3 33 33 H 1.09001 * 109.47843 * 45.00118 * 7 6 3 34 34 H 0.97002 * 120.00405 * 359.97438 * 10 8 7 35 35 H 1.08993 * 110.37010 * 323.75386 * 13 11 10 36 36 H 1.08999 * 110.36358 * 86.07724 * 13 11 10 37 37 H 0.96995 * 120.00654 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.88132 * 239.54867 * 23 14 13 39 39 H 1.09000 * 109.87864 * 118.39088 * 23 14 13 40 40 H 0.96691 * 114.00401 * 66.47412 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2329 -1.0216 5 8 3.6738 1.1003 0.0348 6 7 1.9591 2.1929 1.4336 7 6 2.3998 1.5975 2.6975 8 6 2.3103 2.6258 3.7954 9 8 1.9167 3.7457 3.5467 10 7 2.6667 2.3008 5.0539 11 6 2.5792 3.3004 6.1214 12 1 1.7316 3.9666 5.9613 13 6 3.8999 4.1012 6.2417 14 7 3.9239 4.5812 7.6359 15 6 4.6114 5.6743 8.0915 16 1 5.1999 6.2662 7.4062 17 6 4.5518 6.0217 9.4341 18 7 3.8342 5.3007 10.2692 19 14 5.4890 7.5133 10.0554 20 1 4.6235 8.7163 9.9615 21 1 5.8831 7.2962 11.4706 22 1 6.7058 7.7134 9.2279 23 6 3.0883 3.6917 8.4557 24 6 2.4976 2.6212 7.5140 25 1 1.4626 2.4019 7.7761 26 8 3.2877 1.4308 7.5430 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.9500 -0.8400 -0.0004 31 1 1.4753 3.0336 1.4362 32 1 1.7608 0.7488 2.9416 33 1 3.4314 1.2593 2.5997 34 1 2.9805 1.4048 5.2531 35 1 4.7551 3.4536 6.0490 36 1 3.8972 4.9434 5.5498 37 1 3.7922 5.5436 11.2073 38 1 2.2836 4.2622 8.9194 39 1 3.6973 3.2146 9.2235 40 1 3.2709 0.9682 8.3919 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220077990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:35 Heat of formation + Delta-G solvation = -124.780831 kcal Electronic energy + Delta-G solvation = -25601.327961 eV Core-core repulsion = 21579.185889 eV Total energy + Delta-G solvation = -4022.142072 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.91271 -38.08655 -37.49852 -36.12874 -35.43952 -34.99304 -34.79979 -34.08235 -31.74368 -28.89462 -27.76288 -26.48279 -26.31396 -24.36236 -21.04261 -20.48192 -20.28144 -20.00721 -18.67937 -18.02885 -17.41641 -17.19981 -16.73533 -16.28752 -15.91860 -15.53095 -15.13377 -14.88914 -14.64091 -14.20969 -14.05697 -13.67272 -13.35566 -13.22408 -13.17172 -12.81615 -12.64227 -12.39110 -12.32459 -12.28087 -12.23702 -12.00571 -11.34801 -11.00682 -10.86311 -10.57931 -10.54392 -10.18988 -10.12390 -10.07630 -9.85897 -9.81802 -9.38314 -8.83029 -8.68672 -6.91379 -5.78217 -3.11206 0.27844 2.50046 2.57991 3.20543 3.27973 3.38666 3.43929 3.45792 4.18968 4.35758 4.48576 4.54732 4.63036 4.87590 4.99079 5.00814 5.08116 5.21814 5.30376 5.31157 5.48737 5.53334 5.65417 5.80058 5.98885 6.14391 6.44304 6.48864 6.60868 6.73524 6.85653 7.27604 7.39927 7.61741 7.71013 7.99223 8.15965 8.25699 9.14719 9.74675 10.38500 11.34143 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.027142 B = 0.002579 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.379916 B =10853.912918 C =11415.103108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.132 6.132 3 S 2.798 3.202 4 O -0.974 6.974 5 O -0.977 6.977 6 N -1.114 6.114 7 C 0.101 3.899 8 C 0.508 3.492 9 O -0.535 6.535 10 N -0.703 5.703 11 C 0.138 3.862 12 H 0.105 0.895 13 C 0.130 3.870 14 N -0.601 5.601 15 C -0.225 4.225 16 H 0.080 0.920 17 C -0.009 4.009 18 N -0.927 5.927 19 Si 0.915 3.085 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.154 3.846 24 C 0.069 3.931 25 H 0.061 0.939 26 O -0.568 6.568 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.417 0.583 31 H 0.428 0.572 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.409 0.591 35 H 0.027 0.973 36 H 0.045 0.955 37 H 0.253 0.747 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.574 -16.223 -14.948 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.894 5.894 3 S 2.802 3.198 4 O -0.957 6.957 5 O -0.960 6.960 6 N -0.879 5.879 7 C -0.029 4.029 8 C 0.291 3.709 9 O -0.411 6.411 10 N -0.355 5.355 11 C 0.032 3.968 12 H 0.123 0.877 13 C 0.003 3.997 14 N -0.328 5.328 15 C -0.353 4.353 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.575 5.575 19 Si 0.746 3.254 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.029 3.971 24 C 0.009 3.991 25 H 0.079 0.921 26 O -0.375 6.375 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.250 0.750 31 H 0.265 0.735 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.245 0.755 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -8.164 -14.786 -16.222 23.419 hybrid contribution 0.232 0.001 1.565 1.582 sum -7.932 -14.785 -14.657 22.279 Atomic orbital electron populations 1.21451 0.78486 1.04072 1.02120 1.55720 1.16364 1.25195 1.92083 1.01603 0.73063 0.72581 0.72549 1.93643 1.79098 1.68737 1.54257 1.93646 1.31600 1.83955 1.86781 1.55615 1.74117 1.37274 1.20923 1.21015 1.02575 0.95521 0.83829 1.20346 0.77853 0.88963 0.83720 1.90718 1.46626 1.21735 1.82058 1.45707 1.66124 1.16307 1.07347 1.22401 1.00822 0.89730 0.83801 0.87722 1.21850 0.93569 0.95880 0.88379 1.44286 1.56304 1.30295 1.01869 1.19095 1.21961 1.01585 0.92629 0.90239 1.24791 1.00349 0.99425 0.95944 1.69900 1.44150 1.40138 1.03328 0.86061 0.79314 0.82121 0.77936 1.21530 1.21663 1.20637 1.21864 0.94736 0.89303 0.91232 1.23507 0.93407 0.86286 0.95938 0.92072 1.86233 1.72613 1.39284 1.39321 0.91483 0.90058 0.92030 0.74964 0.73457 0.88783 0.87298 0.75515 0.95520 0.93681 0.93705 0.92629 0.92833 0.77168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.37 11.16 59.85 0.67 1.04 16 2 N -1.13 -6.38 6.24 -16.64 -0.10 -6.49 16 3 S 2.80 26.75 6.18 -107.50 -0.66 26.08 16 4 O -0.97 -12.58 17.86 -57.17 -1.02 -13.60 16 5 O -0.98 -12.31 17.61 -57.17 -1.01 -13.32 16 6 N -1.11 -10.59 5.99 -11.66 -0.07 -10.66 16 7 C 0.10 0.90 6.73 -5.20 -0.03 0.86 16 8 C 0.51 6.74 7.90 -10.99 -0.09 6.66 16 9 O -0.53 -9.17 15.42 5.55 0.09 -9.08 16 10 N -0.70 -9.46 5.18 -51.73 -0.27 -9.73 16 11 C 0.14 2.40 3.25 -65.78 -0.21 2.18 16 12 H 0.10 1.94 7.63 -51.93 -0.40 1.54 16 13 C 0.13 2.79 6.92 -2.50 -0.02 2.77 16 14 N -0.60 -15.18 3.40 -170.04 -0.58 -15.76 16 15 C -0.22 -6.27 10.28 -15.06 -0.15 -6.42 16 16 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 18 N -0.93 -26.48 10.31 55.49 0.57 -25.91 16 19 Si 0.92 22.07 29.55 -169.99 -5.02 17.05 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.15 3.49 5.14 -3.07 -0.02 3.48 16 24 C 0.07 1.15 4.20 -24.90 -0.10 1.04 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 O -0.57 -8.26 12.13 -35.23 -0.43 -8.69 16 27 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.42 1.55 8.96 -34.47 -0.31 1.24 16 31 H 0.43 4.44 7.70 -34.48 -0.27 4.18 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.11 0.88 7.75 -51.93 -0.40 0.47 16 34 H 0.41 4.60 7.57 -40.82 -0.31 4.29 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.06 1.39 7.38 -51.93 -0.38 1.01 16 39 H 0.05 1.33 7.43 -51.93 -0.39 0.95 16 40 H 0.38 4.22 9.12 45.56 0.42 4.63 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -37.62 348.90 -7.84 -45.46 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -4.54 Total: 8.12 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -0.06 Total: 11.26 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: -0.45 Total: -68.54 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -2.37 Total: -44.68 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 26.75 SS G_CDS: -0.66 Total: 26.08 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.62 -7.84 -45.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220077990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.323 kcal (2) G-P(sol) polarization free energy of solvation -37.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds