Wall clock time and date at job start Fri Apr 10 2020 18:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35730 * 116.99943 * 2 1 4 4 C 1.38934 * 119.59749 * 180.02562 * 3 2 1 5 5 C 1.38292 * 119.18645 * 179.97438 * 4 3 2 6 6 C 1.39439 * 118.42705 * 0.02562 * 5 4 3 7 7 N 1.39908 * 120.43213 * 179.97438 * 6 5 4 8 8 C 1.34778 * 120.00168 * 32.71988 * 7 6 5 9 9 O 1.21387 * 119.99912 * 5.27523 * 8 7 6 10 10 C 1.49335 * 119.99959 * 185.27014 * 8 7 6 11 11 O 1.21359 * 119.99842 * 0.02562 * 10 8 7 12 12 N 1.34777 * 119.99941 * 180.02562 * 10 8 7 13 13 C 1.46494 * 120.00023 * 180.02562 * 12 10 8 14 14 C 1.50698 * 109.47169 * 179.97438 * 13 12 10 15 15 O 1.21289 * 119.99760 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99755 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99705 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00135 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99859 * 179.97438 * 17 16 14 20 20 N 1.31415 * 120.00059 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00111 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47131 * 90.00102 * 21 19 17 23 23 H 1.48504 * 109.47107 * 209.99500 * 21 19 17 24 24 H 1.48490 * 109.46977 * 329.99998 * 21 19 17 25 25 C 1.38726 * 119.13539 * 359.97438 * 6 5 4 26 26 N 1.31930 * 120.73146 * 0.02562 * 25 6 5 27 27 H 1.09000 * 109.46986 * 59.99963 * 1 2 3 28 28 H 1.08993 * 109.47557 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46894 * 300.00152 * 1 2 3 30 30 H 1.07996 * 120.40846 * 0.27389 * 4 3 2 31 31 H 1.08005 * 120.78344 * 180.02562 * 5 4 3 32 32 H 0.97004 * 119.99708 * 212.73122 * 7 6 5 33 33 H 0.96994 * 119.99836 * 359.97438 * 12 10 8 34 34 H 1.09005 * 109.47106 * 299.99463 * 13 12 10 35 35 H 1.08998 * 109.47505 * 59.99176 * 13 12 10 36 36 H 0.96999 * 120.00529 * 0.02562 * 16 14 13 37 37 H 0.96999 * 120.00113 * 180.02562 * 20 19 17 38 38 H 1.08007 * 119.63394 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4332 1.2723 -0.0005 5 6 4.0521 2.5090 -0.0011 6 6 3.2526 3.6515 -0.0005 7 7 3.8347 4.9237 -0.0005 8 6 5.0078 5.1282 -0.6318 9 8 5.5117 4.2345 -1.2806 10 6 5.6875 6.4542 -0.5333 11 8 5.1839 7.3475 0.1156 12 7 6.8604 6.6588 -1.1651 13 6 7.5275 7.9594 -1.0680 14 6 8.8106 7.9260 -1.8576 15 8 9.1360 6.9150 -2.4433 16 7 9.5965 9.0195 -1.9128 17 6 10.7641 8.9889 -2.6307 18 1 11.0539 8.0887 -3.1523 19 6 11.5741 10.1164 -2.6881 20 7 12.6931 10.0873 -3.3766 21 14 11.0725 11.6737 -1.7865 22 1 11.6285 11.6494 -0.4097 23 1 11.5995 12.8573 -2.5122 24 1 9.5912 11.7522 -1.7209 25 6 1.8726 3.5101 0.0000 26 7 1.3175 2.3132 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 4.0215 0.3667 -0.0054 31 1 5.1293 2.5880 -0.0019 32 1 3.3940 5.6586 0.4541 33 1 7.2630 5.9447 -1.6834 34 1 6.8737 8.7339 -1.4692 35 1 7.7497 8.1768 -0.0233 36 1 9.3365 9.8279 -1.4441 37 1 13.2587 10.8743 -3.4164 38 1 1.2457 4.3896 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342539227.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:52 Heat of formation + Delta-G solvation = -87.008262 kcal Electronic energy + Delta-G solvation = -25280.836208 eV Core-core repulsion = 21124.888126 eV Total energy + Delta-G solvation = -4155.948082 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.51880 -40.56803 -39.22957 -38.38515 -37.95853 -35.58031 -34.58916 -33.87684 -32.69833 -31.87644 -30.21742 -28.56060 -27.61408 -25.41766 -24.13729 -24.07158 -22.53912 -20.53212 -19.89644 -19.31199 -18.76461 -18.48225 -17.70620 -17.24708 -16.69821 -16.36210 -16.17223 -15.63768 -15.40901 -15.12305 -14.93442 -14.83370 -14.58880 -14.18610 -14.01444 -13.78410 -13.51501 -13.24183 -13.09577 -12.61572 -12.28025 -12.27101 -12.24660 -11.86205 -11.83832 -11.29554 -10.96234 -10.70087 -10.27665 -10.12262 -10.08005 -9.76733 -9.68268 -9.26792 -8.87595 -8.38231 -8.37220 -6.46141 -3.99351 0.55636 0.81887 1.32901 2.00146 2.75045 2.93575 2.96041 2.98957 3.08033 3.35096 3.39797 3.46374 3.90699 3.97983 4.21949 4.40921 4.42977 4.59270 4.73637 4.93165 4.95564 5.07246 5.16008 5.24876 5.34309 5.46579 5.58341 5.60237 5.60683 5.76206 6.10413 6.13917 6.59850 6.84321 7.17398 7.37827 7.39468 7.50230 7.81372 7.96054 8.37530 8.75569 9.22666 9.54693 10.65761 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.043309 B = 0.001933 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.361706 B =14479.241872 C =15009.025775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.308 6.308 3 C 0.305 3.695 4 C -0.166 4.166 5 C -0.041 4.041 6 C 0.059 3.941 7 N -0.640 5.640 8 C 0.511 3.489 9 O -0.492 6.492 10 C 0.509 3.491 11 O -0.527 6.527 12 N -0.669 5.669 13 C 0.103 3.897 14 C 0.434 3.566 15 O -0.574 6.574 16 N -0.573 5.573 17 C -0.312 4.312 18 H 0.123 0.877 19 C 0.046 3.954 20 N -0.871 5.871 21 Si 0.880 3.120 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.267 1.267 25 C 0.123 3.877 26 N -0.522 5.522 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.148 0.852 31 H 0.156 0.844 32 H 0.425 0.575 33 H 0.425 0.575 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.375 0.625 37 H 0.276 0.724 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.256 -11.851 10.145 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.214 6.214 3 C 0.126 3.874 4 C -0.187 4.187 5 C -0.069 4.069 6 C -0.037 4.037 7 N -0.288 5.288 8 C 0.293 3.707 9 O -0.365 6.365 10 C 0.288 3.712 11 O -0.404 6.404 12 N -0.325 5.325 13 C -0.024 4.024 14 C 0.219 3.781 15 O -0.458 6.458 16 N -0.210 5.210 17 C -0.440 4.440 18 H 0.140 0.860 19 C -0.158 4.158 20 N -0.510 5.510 21 Si 0.706 3.294 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.192 1.192 25 C -0.035 4.035 26 N -0.245 5.245 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.166 0.834 31 H 0.173 0.827 32 H 0.264 0.736 33 H 0.266 0.734 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.208 0.792 37 H 0.087 0.913 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -23.531 -12.728 9.635 28.435 hybrid contribution 0.402 1.654 0.573 1.796 sum -23.129 -11.073 10.208 27.600 Atomic orbital electron populations 1.22868 0.77169 1.03003 1.02489 1.86257 1.22943 1.24302 1.87944 1.19848 0.89444 0.84650 0.93480 1.21016 0.91789 0.99289 1.06591 1.21514 1.01680 0.89851 0.93809 1.18579 0.93188 0.85367 1.06592 1.42960 1.22185 1.10344 1.53356 1.20371 0.81662 0.89202 0.79473 1.90825 1.63700 1.44312 1.37650 1.19623 0.82485 0.87725 0.81368 1.90773 1.64955 1.43895 1.40787 1.45487 1.20629 1.16568 1.49777 1.21167 0.94297 0.84998 1.01949 1.19503 0.86215 0.85286 0.87050 1.90583 1.74037 1.31916 1.49263 1.42095 1.21047 1.11830 1.46049 1.19456 0.95246 1.02076 1.27244 0.85977 1.25077 0.95551 0.98135 0.97080 1.69617 1.11702 1.30551 1.39114 0.86664 0.78918 0.83306 0.80541 1.19360 1.19925 1.19239 1.22200 0.90446 0.94492 0.96350 1.67291 1.40076 0.98231 1.18864 0.92247 0.88606 0.92274 0.83402 0.82669 0.73624 0.73385 0.88862 0.88858 0.79212 0.91294 0.81781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.38 101.05 1.05 1.31 16 2 O -0.31 -2.92 10.48 -18.90 -0.20 -3.11 16 3 C 0.31 3.11 7.49 -17.13 -0.13 2.98 16 4 C -0.17 -1.57 10.03 -39.30 -0.39 -1.97 16 5 C -0.04 -0.42 8.76 -39.11 -0.34 -0.76 16 6 C 0.06 0.57 6.31 -83.54 -0.53 0.04 16 7 N -0.64 -5.97 5.34 -10.18 -0.05 -6.02 16 8 C 0.51 6.24 7.65 -11.64 -0.09 6.15 16 9 O -0.49 -7.09 14.16 5.46 0.08 -7.01 16 10 C 0.51 6.90 7.89 -11.64 -0.09 6.81 16 11 O -0.53 -7.57 16.48 5.49 0.09 -7.48 16 12 N -0.67 -10.15 5.52 -61.95 -0.34 -10.49 16 13 C 0.10 1.62 6.15 -5.20 -0.03 1.59 16 14 C 0.43 9.12 7.85 -10.99 -0.09 9.04 16 15 O -0.57 -14.26 15.24 5.55 0.08 -14.17 16 16 N -0.57 -12.76 5.09 -10.96 -0.06 -12.82 16 17 C -0.31 -8.39 10.16 -14.93 -0.15 -8.54 16 18 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 19 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 20 N -0.87 -24.43 13.96 55.50 0.77 -23.65 16 21 Si 0.88 18.37 27.74 -169.99 -4.71 13.66 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.27 -5.04 6.52 56.52 0.37 -4.67 16 25 C 0.12 1.05 11.11 -17.33 -0.19 0.86 16 26 N -0.52 -5.17 9.20 -13.15 -0.12 -5.30 16 27 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 30 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.16 1.64 6.47 -52.48 -0.34 1.30 16 32 H 0.43 3.05 8.30 -40.82 -0.34 2.71 16 33 H 0.43 6.97 6.91 -40.82 -0.28 6.69 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.37 7.24 5.76 -40.82 -0.24 7.01 16 37 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.17 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 343.11 15.07 5.17 5.17 Total: -1.00 -32.94 343.11 -4.08 -37.02 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -3.71 Total: 15.59 kcal Atomic # 6 Polarization: 19.70 SS G_CDS: -1.08 Total: 18.62 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.20 Total: -58.28 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: 0.05 Total: -31.77 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -4.71 Total: 13.66 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.94 -4.08 -37.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342539227.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.988 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds