Wall clock time and date at job start Fri Apr 10 2020 18:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35730 * 116.99943 * 2 1 4 4 C 1.38934 * 119.59749 * 180.02562 * 3 2 1 5 5 C 1.38292 * 119.18645 * 179.97438 * 4 3 2 6 6 C 1.39439 * 118.42705 * 0.02562 * 5 4 3 7 7 N 1.39908 * 120.43213 * 179.97438 * 6 5 4 8 8 C 1.34778 * 120.00168 * 32.71988 * 7 6 5 9 9 O 1.21387 * 119.99912 * 5.27523 * 8 7 6 10 10 C 1.49335 * 119.99959 * 185.27014 * 8 7 6 11 11 O 1.21359 * 119.99842 * 0.02562 * 10 8 7 12 12 N 1.34777 * 119.99941 * 180.02562 * 10 8 7 13 13 C 1.46494 * 120.00023 * 180.02562 * 12 10 8 14 14 C 1.50698 * 109.47169 * 179.97438 * 13 12 10 15 15 O 1.21289 * 119.99760 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99755 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99705 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00135 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99859 * 179.97438 * 17 16 14 20 20 N 1.31415 * 120.00059 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00111 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47131 * 90.00102 * 21 19 17 23 23 H 1.48504 * 109.47107 * 209.99500 * 21 19 17 24 24 H 1.48490 * 109.46977 * 329.99998 * 21 19 17 25 25 C 1.38726 * 119.13539 * 359.97438 * 6 5 4 26 26 N 1.31930 * 120.73146 * 0.02562 * 25 6 5 27 27 H 1.09000 * 109.46986 * 59.99963 * 1 2 3 28 28 H 1.08993 * 109.47557 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46894 * 300.00152 * 1 2 3 30 30 H 1.07996 * 120.40846 * 0.27389 * 4 3 2 31 31 H 1.08005 * 120.78344 * 180.02562 * 5 4 3 32 32 H 0.97004 * 119.99708 * 212.73122 * 7 6 5 33 33 H 0.96994 * 119.99836 * 359.97438 * 12 10 8 34 34 H 1.09005 * 109.47106 * 299.99463 * 13 12 10 35 35 H 1.08998 * 109.47505 * 59.99176 * 13 12 10 36 36 H 0.96999 * 120.00529 * 0.02562 * 16 14 13 37 37 H 0.96999 * 120.00113 * 180.02562 * 20 19 17 38 38 H 1.08007 * 119.63394 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4332 1.2723 -0.0005 5 6 4.0521 2.5090 -0.0011 6 6 3.2526 3.6515 -0.0005 7 7 3.8347 4.9237 -0.0005 8 6 5.0078 5.1282 -0.6318 9 8 5.5117 4.2345 -1.2806 10 6 5.6875 6.4542 -0.5333 11 8 5.1839 7.3475 0.1156 12 7 6.8604 6.6588 -1.1651 13 6 7.5275 7.9594 -1.0680 14 6 8.8106 7.9260 -1.8576 15 8 9.1360 6.9150 -2.4433 16 7 9.5965 9.0195 -1.9128 17 6 10.7641 8.9889 -2.6307 18 1 11.0539 8.0887 -3.1523 19 6 11.5741 10.1164 -2.6881 20 7 12.6931 10.0873 -3.3766 21 14 11.0725 11.6737 -1.7865 22 1 11.6285 11.6494 -0.4097 23 1 11.5995 12.8573 -2.5122 24 1 9.5912 11.7522 -1.7209 25 6 1.8726 3.5101 0.0000 26 7 1.3175 2.3132 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 4.0215 0.3667 -0.0054 31 1 5.1293 2.5880 -0.0019 32 1 3.3940 5.6586 0.4541 33 1 7.2630 5.9447 -1.6834 34 1 6.8737 8.7339 -1.4692 35 1 7.7497 8.1768 -0.0233 36 1 9.3365 9.8279 -1.4441 37 1 13.2587 10.8743 -3.4164 38 1 1.2457 4.3896 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342539227.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:51 Heat of formation + Delta-G solvation = -116.773910 kcal Electronic energy + Delta-G solvation = -25282.126944 eV Core-core repulsion = 21124.888126 eV Total energy + Delta-G solvation = -4157.238817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.38572 -41.47108 -40.54959 -39.71459 -38.78421 -36.61386 -36.13047 -35.29694 -33.84199 -33.42742 -30.99418 -29.90201 -28.24047 -26.86900 -25.44629 -24.78299 -23.44681 -21.53630 -21.51238 -20.75328 -20.00041 -19.43083 -18.63611 -18.14374 -17.80645 -17.28420 -17.15280 -16.99719 -16.85754 -16.39593 -16.29783 -15.62153 -15.51376 -15.29672 -15.10683 -14.90298 -14.50266 -14.41131 -14.34438 -14.05652 -13.79837 -13.65404 -12.96470 -12.95995 -12.71396 -12.54261 -12.43758 -11.99129 -11.69688 -11.57664 -11.14861 -10.90205 -10.69280 -10.52879 -10.44900 -10.31219 -9.12334 -8.44841 -6.07802 -0.26986 0.08574 0.40046 1.01922 1.32345 1.35662 1.46210 1.78203 1.95769 2.09384 2.21897 2.36339 2.65822 2.81064 3.11232 3.20039 3.28547 3.73109 3.87456 3.95679 4.01057 4.34325 4.37292 4.46186 4.46367 4.51964 4.59944 4.80095 4.86772 4.92879 5.00894 5.35704 5.47310 5.72370 5.87985 6.15851 6.17370 6.46805 6.53691 6.68088 6.74608 6.78640 7.28150 7.78356 8.71600 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.043309 B = 0.001933 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.361706 B =14479.241872 C =15009.025775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.319 6.319 3 C 0.296 3.704 4 C -0.172 4.172 5 C -0.051 4.051 6 C 0.047 3.953 7 N -0.619 5.619 8 C 0.515 3.485 9 O -0.520 6.520 10 C 0.518 3.482 11 O -0.529 6.529 12 N -0.681 5.681 13 C 0.116 3.884 14 C 0.440 3.560 15 O -0.617 6.617 16 N -0.574 5.574 17 C -0.334 4.334 18 H 0.061 0.939 19 C -0.009 4.009 20 N -0.927 5.927 21 Si 0.962 3.038 22 H -0.256 1.256 23 H -0.276 1.276 24 H -0.227 1.227 25 C 0.133 3.867 26 N -0.531 5.531 27 H 0.057 0.943 28 H 0.121 0.879 29 H 0.060 0.940 30 H 0.160 0.840 31 H 0.147 0.853 32 H 0.437 0.563 33 H 0.419 0.581 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.394 0.606 37 H 0.281 0.719 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.276 -10.285 12.203 30.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.226 6.226 3 C 0.117 3.883 4 C -0.193 4.193 5 C -0.078 4.078 6 C -0.049 4.049 7 N -0.268 5.268 8 C 0.297 3.703 9 O -0.394 6.394 10 C 0.298 3.702 11 O -0.406 6.406 12 N -0.335 5.335 13 C -0.011 4.011 14 C 0.228 3.772 15 O -0.503 6.503 16 N -0.214 5.214 17 C -0.463 4.463 18 H 0.079 0.921 19 C -0.209 4.209 20 N -0.566 5.566 21 Si 0.781 3.219 22 H -0.180 1.180 23 H -0.201 1.201 24 H -0.150 1.150 25 C -0.025 4.025 26 N -0.254 5.254 27 H 0.075 0.925 28 H 0.139 0.861 29 H 0.079 0.921 30 H 0.178 0.822 31 H 0.165 0.835 32 H 0.278 0.722 33 H 0.258 0.742 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.230 0.770 37 H 0.091 0.909 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -26.621 -11.166 11.733 31.161 hybrid contribution 1.260 0.980 -0.090 1.599 sum -25.361 -10.186 11.642 29.707 Atomic orbital electron populations 1.23083 0.75678 1.04716 1.02420 1.86245 1.24490 1.24110 1.87770 1.20055 0.89789 0.85066 0.93405 1.21148 0.91942 0.99615 1.06592 1.21546 1.01494 0.90558 0.94171 1.18670 0.93693 0.85031 1.07536 1.42776 1.21054 1.10758 1.52241 1.20118 0.82265 0.88324 0.79629 1.90830 1.64609 1.44831 1.39160 1.19680 0.81794 0.88084 0.80639 1.90773 1.64895 1.44152 1.40788 1.45537 1.21336 1.16213 1.50421 1.21138 0.91443 0.86106 1.02425 1.20531 0.87187 0.83918 0.85612 1.90574 1.75396 1.33580 1.50721 1.41870 1.20019 1.13193 1.46306 1.19024 0.97843 1.00719 1.28683 0.92124 1.26123 0.94880 1.02279 0.97626 1.69792 1.13450 1.32182 1.41193 0.85410 0.80923 0.76670 0.78876 1.18043 1.20081 1.15030 1.22672 0.90270 0.95067 0.94491 1.67369 1.40224 0.98562 1.19268 0.92462 0.86111 0.92116 0.82245 0.83517 0.72166 0.74203 0.86059 0.85981 0.76968 0.90926 0.78616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 113.37 1.18 1.59 16 2 O -0.32 -5.73 10.48 -90.53 -0.95 -6.68 16 3 C 0.30 5.73 7.49 84.80 0.63 6.36 16 4 C -0.17 -3.18 10.03 22.45 0.23 -2.95 16 5 C -0.05 -1.00 8.76 22.57 0.20 -0.80 16 6 C 0.05 0.82 6.31 38.26 0.24 1.06 16 7 N -0.62 -10.28 5.34 -304.47 -1.63 -11.91 16 8 C 0.51 11.87 7.65 87.23 0.67 12.53 16 9 O -0.52 -14.80 14.16 -3.36 -0.05 -14.85 16 10 C 0.52 12.93 7.89 87.23 0.69 13.61 16 11 O -0.53 -13.45 16.48 -3.27 -0.05 -13.51 16 12 N -0.68 -19.56 5.52 -468.27 -2.59 -22.14 16 13 C 0.12 3.30 6.15 85.63 0.53 3.83 16 14 C 0.44 18.28 7.85 87.66 0.69 18.96 16 15 O -0.62 -31.57 15.24 -3.06 -0.05 -31.62 16 16 N -0.57 -25.14 5.09 -306.99 -1.56 -26.70 16 17 C -0.33 -18.58 10.16 84.04 0.85 -17.72 16 18 H 0.06 4.04 7.39 -2.91 -0.02 4.02 16 19 C -0.01 -0.48 5.50 84.93 0.47 -0.02 16 20 N -0.93 -53.86 13.96 21.66 0.30 -53.56 16 21 Si 0.96 36.61 27.74 68.60 1.90 38.51 16 22 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 23 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 24 H -0.23 -7.13 6.52 99.48 0.65 -6.48 16 25 C 0.13 1.97 11.11 84.79 0.94 2.92 16 26 N -0.53 -9.65 9.20 -308.39 -2.84 -12.49 16 27 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16 28 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.67 8.10 -2.39 -0.02 0.65 16 30 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.15 3.13 6.47 -2.91 -0.02 3.12 16 32 H 0.44 5.02 8.30 -92.71 -0.77 4.25 16 33 H 0.42 13.66 6.91 -92.71 -0.64 13.02 16 34 H 0.12 2.89 8.14 -2.38 -0.02 2.87 16 35 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.39 14.02 5.76 -92.71 -0.53 13.49 16 37 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.20 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -75.74 343.11 -1.03 -76.77 By element: Atomic # 1 Polarization: 39.63 SS G_CDS: -0.84 Total: 38.80 kcal Atomic # 6 Polarization: 32.06 SS G_CDS: 7.31 Total: 39.37 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -8.31 Total: -126.80 kcal Atomic # 8 Polarization: -65.55 SS G_CDS: -1.10 Total: -66.64 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 1.90 Total: 38.51 kcal Total: -75.74 -1.03 -76.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342539227.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.000 kcal (2) G-P(sol) polarization free energy of solvation -75.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds