Wall clock time and date at job start Fri Apr 10 2020 18:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86805 * 120.00111 * 2 1 4 4 H 1.48503 * 109.46793 * 269.99230 * 3 2 1 5 5 H 1.48495 * 109.47019 * 29.99404 * 3 2 1 6 6 H 1.48499 * 109.47267 * 149.99627 * 3 2 1 7 7 C 1.38644 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99886 * 180.02562 * 7 2 1 9 9 O 1.34806 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.35770 * 117.00010 * 174.51666 * 9 7 2 11 11 C 1.38740 * 120.08501 * 354.19117 * 10 9 7 12 12 C 1.38347 * 119.97716 * 179.97438 * 11 10 9 13 13 F 1.35098 * 119.92564 * 180.02562 * 12 11 10 14 14 C 1.38553 * 120.14893 * 359.97438 * 12 11 10 15 15 C 1.38185 * 120.18294 * 0.27845 * 14 12 11 16 16 C 1.38713 * 120.01365 * 359.44354 * 15 14 12 17 17 N 1.40090 * 120.07489 * 180.25454 * 16 15 14 18 18 C 1.34777 * 120.00145 * 34.06964 * 17 16 15 19 19 O 1.21296 * 119.99653 * 5.61377 * 18 17 16 20 20 C 1.50702 * 120.00320 * 185.60692 * 18 17 16 21 21 N 1.46500 * 109.47018 * 180.02562 * 20 18 17 22 22 N 1.28938 * 126.47267 * 269.68904 * 21 20 18 23 23 N 1.28577 * 109.63163 * 179.86884 * 22 21 20 24 24 C 1.33392 * 109.89024 * 0.40695 * 23 22 21 25 25 N 1.39620 * 126.25856 * 179.75628 * 24 23 22 26 26 N 1.31684 * 107.48254 * 359.76000 * 24 23 22 27 27 H 0.97003 * 119.99591 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.01793 * 0.02562 * 11 10 9 29 29 H 1.08007 * 119.90936 * 179.97438 * 14 12 11 30 30 H 1.07996 * 119.99189 * 179.70419 * 15 14 12 31 31 H 0.97006 * 120.00441 * 214.07075 * 17 16 15 32 32 H 1.09001 * 109.46905 * 300.00520 * 20 18 17 33 33 H 1.09000 * 109.46537 * 60.00092 * 20 18 17 34 34 H 0.96994 * 120.00472 * 180.02562 * 25 24 23 35 35 H 0.97007 * 119.99930 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4974 2.0463 -1.4001 5 1 1.4472 2.6527 0.6999 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3681 0.0016 10 6 2.0694 -3.5041 -0.1135 11 6 3.4351 -3.4286 -0.3461 12 6 4.1816 -4.5876 -0.4625 13 9 5.5115 -4.5129 -0.6884 14 6 3.5686 -5.8248 -0.3468 15 6 2.2079 -5.9074 -0.1204 16 6 1.4535 -4.7500 0.0033 17 7 0.0749 -4.8323 0.2381 18 6 -0.4220 -5.8344 0.9900 19 8 0.3308 -6.6054 1.5468 20 6 -1.9128 -5.9970 1.1389 21 7 -2.1949 -7.1492 1.9986 22 7 -2.3639 -8.3685 1.6150 23 7 -2.5904 -9.1154 2.6368 24 6 -2.5835 -8.3780 3.7483 25 7 -2.7969 -8.8414 5.0480 26 7 -2.3385 -7.1331 3.3957 27 1 -0.4850 0.8401 -0.0004 28 1 3.9156 -2.4655 -0.4354 29 1 4.1550 -6.7271 -0.4388 30 1 1.7325 -6.8734 -0.0355 31 1 -0.5222 -4.1680 -0.1404 32 1 -2.3333 -5.0972 1.5881 33 1 -2.3605 -6.1567 0.1580 34 1 -2.7718 -8.2220 5.7940 35 1 -2.9711 -9.7827 5.2048 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362293902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:57 Heat of formation + Delta-G solvation = 65.779096 kcal Electronic energy + Delta-G solvation = -25971.774574 eV Core-core repulsion = 21731.284295 eV Total energy + Delta-G solvation = -4240.490279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.34796 -43.00622 -40.30797 -38.78119 -36.52781 -35.66988 -34.33722 -33.78596 -32.50878 -31.52454 -29.78358 -29.29831 -27.77271 -25.60958 -23.76418 -22.58580 -22.40990 -21.73539 -20.41133 -18.48389 -18.37810 -17.80100 -17.53703 -16.96120 -16.65857 -16.18325 -15.96771 -15.58063 -15.34122 -15.04190 -14.95688 -14.36379 -14.11888 -13.83382 -13.78408 -13.62429 -13.35621 -12.89153 -12.41202 -12.26952 -12.07741 -11.85771 -11.73746 -11.48654 -11.08339 -10.84523 -10.71943 -10.65493 -10.59428 -9.98197 -9.92791 -9.60876 -9.05097 -8.81555 -8.02143 -7.27367 -6.70067 -4.27630 1.03191 1.56660 1.64510 2.00380 2.51771 2.58551 2.97800 3.01341 3.03009 3.07429 3.24370 3.77457 4.11684 4.21983 4.53701 4.74101 4.75019 4.77365 4.86545 4.99642 5.24603 5.45251 5.62894 5.64544 5.88601 6.02445 6.09850 6.38049 6.62557 6.79727 6.80410 6.86106 6.88279 7.07002 7.21484 7.48779 7.59532 7.73967 8.18977 8.38885 8.76131 9.34584 10.46793 Molecular weight = 322.10amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.003429 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.646739 B = 8163.187741 C = 9827.623060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.166 6.166 10 C 0.162 3.838 11 C -0.258 4.258 12 C 0.135 3.865 13 F -0.150 7.150 14 C -0.229 4.229 15 C -0.045 4.045 16 C 0.055 3.945 17 N -0.639 5.639 18 C 0.497 3.503 19 O -0.516 6.516 20 C 0.123 3.877 21 N -0.185 5.185 22 N 0.027 4.973 23 N -0.343 5.343 24 C 0.443 3.557 25 N -0.814 5.814 26 N -0.341 5.341 27 H 0.273 0.727 28 H 0.145 0.855 29 H 0.124 0.876 30 H 0.134 0.866 31 H 0.419 0.581 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.418 0.582 35 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.575 -9.686 2.904 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.161 4.161 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.468 4.468 8 H 0.112 0.888 9 O -0.069 6.069 10 C 0.106 3.894 11 C -0.279 4.279 12 C 0.115 3.885 13 F -0.128 7.128 14 C -0.249 4.249 15 C -0.065 4.065 16 C -0.038 4.038 17 N -0.285 5.285 18 C 0.281 3.719 19 O -0.391 6.391 20 C -0.002 4.002 21 N -0.098 5.098 22 N 0.032 4.968 23 N -0.225 5.225 24 C 0.069 3.931 25 N -0.373 5.373 26 N -0.192 5.192 27 H 0.083 0.917 28 H 0.162 0.838 29 H 0.142 0.858 30 H 0.152 0.848 31 H 0.256 0.744 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.249 0.751 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -5.409 -9.937 2.642 11.618 hybrid contribution 0.484 1.256 0.671 1.504 sum -4.925 -8.681 3.313 10.517 Atomic orbital electron populations 1.69992 1.05950 1.28180 1.44989 1.25291 0.95935 0.98888 0.95967 0.85672 0.79082 0.79637 0.78935 1.19658 1.20085 1.19012 1.21354 0.92024 0.80288 1.53170 0.88773 1.83916 1.33980 1.11359 1.77628 1.18768 0.89556 0.86898 0.94203 1.20886 0.94103 0.98454 1.14427 1.17466 0.76722 0.94224 1.00060 1.91421 1.31901 1.97345 1.92158 1.20453 0.95118 0.95784 1.13583 1.20452 0.92739 0.96842 0.96502 1.16729 0.82977 0.91202 1.12940 1.42921 1.06951 1.28538 1.50072 1.20372 0.89847 0.82322 0.79363 1.90787 1.59273 1.43612 1.45435 1.21792 0.95616 0.87041 0.95800 1.52363 1.47124 1.06690 1.03609 1.78286 1.07663 0.89435 1.21457 1.75212 1.26694 1.26061 0.94538 1.21625 0.94724 0.87547 0.89228 1.40889 1.82976 1.12843 1.00558 1.78937 1.32605 1.17677 0.89999 0.91695 0.83793 0.85797 0.84793 0.74448 0.83637 0.83608 0.75072 0.74997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.36 13.67 55.48 0.76 -21.60 16 2 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 3 Si 0.94 19.02 29.55 -169.99 -5.02 13.99 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 7 C -0.39 -9.93 9.44 30.88 0.29 -9.64 16 8 H 0.09 2.25 5.30 -52.49 -0.28 1.97 16 9 O -0.17 -4.10 9.30 0.05 0.00 -4.10 16 10 C 0.16 3.54 6.66 -38.94 -0.26 3.28 16 11 C -0.26 -5.40 9.11 -39.36 -0.36 -5.76 16 12 C 0.14 2.61 7.29 -39.42 -0.29 2.32 16 13 F -0.15 -2.78 17.26 2.25 0.04 -2.74 16 14 C -0.23 -4.12 10.02 -39.48 -0.40 -4.52 16 15 C -0.05 -0.83 8.65 -39.43 -0.34 -1.17 16 16 C 0.06 1.07 6.28 -83.45 -0.52 0.55 16 17 N -0.64 -10.33 5.20 -9.71 -0.05 -10.38 16 18 C 0.50 7.65 7.63 -10.98 -0.08 7.57 16 19 O -0.52 -9.98 14.19 5.54 0.08 -9.90 16 20 C 0.12 1.36 7.23 -5.19 -0.04 1.32 16 21 N -0.18 -2.63 3.83 -11.65 -0.04 -2.67 16 22 N 0.03 0.40 13.24 60.35 0.80 1.20 16 23 N -0.34 -5.11 12.32 30.02 0.37 -4.74 16 24 C 0.44 5.99 9.63 -320.89 -3.09 2.90 16 25 N -0.81 -6.98 9.13 30.04 0.27 -6.70 16 26 N -0.34 -5.10 12.79 30.03 0.38 -4.72 16 27 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 28 H 0.14 3.01 5.71 -52.49 -0.30 2.71 16 29 H 0.12 1.94 8.06 -52.48 -0.42 1.51 16 30 H 0.13 2.38 6.48 -52.49 -0.34 2.04 16 31 H 0.42 6.04 8.55 -40.82 -0.35 5.69 16 32 H 0.15 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.15 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.42 2.74 8.96 -40.82 -0.37 2.38 16 35 H 0.42 2.55 8.96 -40.82 -0.37 2.18 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -33.19 325.86 -5.09 -38.28 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -2.40 Total: 11.30 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -5.18 Total: -2.13 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 2.49 Total: -49.61 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -14.00 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.74 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.19 -5.09 -38.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362293902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.057 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds