Wall clock time and date at job start Fri Apr 10 2020 18:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86805 * 120.00111 * 2 1 4 4 H 1.48503 * 109.46793 * 269.99230 * 3 2 1 5 5 H 1.48495 * 109.47019 * 29.99404 * 3 2 1 6 6 H 1.48499 * 109.47267 * 149.99627 * 3 2 1 7 7 C 1.38644 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99886 * 180.02562 * 7 2 1 9 9 O 1.34806 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.35770 * 117.00010 * 174.51666 * 9 7 2 11 11 C 1.38740 * 120.08501 * 354.19117 * 10 9 7 12 12 C 1.38347 * 119.97716 * 179.97438 * 11 10 9 13 13 F 1.35098 * 119.92564 * 180.02562 * 12 11 10 14 14 C 1.38553 * 120.14893 * 359.97438 * 12 11 10 15 15 C 1.38185 * 120.18294 * 0.27845 * 14 12 11 16 16 C 1.38713 * 120.01365 * 359.44354 * 15 14 12 17 17 N 1.40090 * 120.07489 * 180.25454 * 16 15 14 18 18 C 1.34777 * 120.00145 * 34.06964 * 17 16 15 19 19 O 1.21296 * 119.99653 * 5.61377 * 18 17 16 20 20 C 1.50702 * 120.00320 * 185.60692 * 18 17 16 21 21 N 1.46500 * 109.47018 * 180.02562 * 20 18 17 22 22 N 1.28938 * 126.47267 * 269.68904 * 21 20 18 23 23 N 1.28577 * 109.63163 * 179.86884 * 22 21 20 24 24 C 1.33392 * 109.89024 * 0.40695 * 23 22 21 25 25 N 1.39620 * 126.25856 * 179.75628 * 24 23 22 26 26 N 1.31684 * 107.48254 * 359.76000 * 24 23 22 27 27 H 0.97003 * 119.99591 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.01793 * 0.02562 * 11 10 9 29 29 H 1.08007 * 119.90936 * 179.97438 * 14 12 11 30 30 H 1.07996 * 119.99189 * 179.70419 * 15 14 12 31 31 H 0.97006 * 120.00441 * 214.07075 * 17 16 15 32 32 H 1.09001 * 109.46905 * 300.00520 * 20 18 17 33 33 H 1.09000 * 109.46537 * 60.00092 * 20 18 17 34 34 H 0.96994 * 120.00472 * 180.02562 * 25 24 23 35 35 H 0.97007 * 119.99930 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4974 2.0463 -1.4001 5 1 1.4472 2.6527 0.6999 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3681 0.0016 10 6 2.0694 -3.5041 -0.1135 11 6 3.4351 -3.4286 -0.3461 12 6 4.1816 -4.5876 -0.4625 13 9 5.5115 -4.5129 -0.6884 14 6 3.5686 -5.8248 -0.3468 15 6 2.2079 -5.9074 -0.1204 16 6 1.4535 -4.7500 0.0033 17 7 0.0749 -4.8323 0.2381 18 6 -0.4220 -5.8344 0.9900 19 8 0.3308 -6.6054 1.5468 20 6 -1.9128 -5.9970 1.1389 21 7 -2.1949 -7.1492 1.9986 22 7 -2.3639 -8.3685 1.6150 23 7 -2.5904 -9.1154 2.6368 24 6 -2.5835 -8.3780 3.7483 25 7 -2.7969 -8.8414 5.0480 26 7 -2.3385 -7.1331 3.3957 27 1 -0.4850 0.8401 -0.0004 28 1 3.9156 -2.4655 -0.4354 29 1 4.1550 -6.7271 -0.4388 30 1 1.7325 -6.8734 -0.0355 31 1 -0.5222 -4.1680 -0.1404 32 1 -2.3333 -5.0972 1.5881 33 1 -2.3605 -6.1567 0.1580 34 1 -2.7718 -8.2220 5.7940 35 1 -2.9711 -9.7827 5.2048 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362293902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:57 Heat of formation + Delta-G solvation = 42.243109 kcal Electronic energy + Delta-G solvation = -25972.795171 eV Core-core repulsion = 21731.284295 eV Total energy + Delta-G solvation = -4241.510876 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.87267 -44.05077 -41.73413 -40.31876 -38.11933 -36.62391 -35.74379 -34.79776 -34.31984 -32.51792 -31.24973 -30.69010 -29.06869 -27.39996 -24.97075 -24.00099 -23.49335 -23.19320 -21.73463 -20.18004 -19.76458 -18.99555 -18.83080 -18.14734 -17.66016 -17.40922 -17.11861 -16.97640 -16.83792 -16.56492 -16.27344 -15.95949 -15.49732 -15.41811 -15.22761 -14.91539 -14.82357 -14.11755 -13.92448 -13.71319 -13.42839 -13.10927 -13.03154 -12.85542 -12.62359 -12.37878 -12.15348 -11.82124 -11.78919 -11.69026 -11.31859 -11.00316 -10.82485 -9.70445 -9.61725 -8.84384 -8.52230 -6.17432 -0.06060 0.10301 0.41662 0.63442 1.32795 1.38768 1.44588 1.48872 1.52771 1.92516 2.13725 2.21961 2.61518 3.04054 3.12170 3.20079 3.35957 3.40816 3.88658 3.90453 4.00422 4.13079 4.30635 4.37498 4.54555 4.62656 4.84314 4.98579 5.09164 5.18639 5.24759 5.30178 5.43805 5.91388 5.95917 6.09220 6.29999 6.55506 6.90752 6.93741 7.39770 7.58466 8.67803 Molecular weight = 322.10amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.003429 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.646739 B = 8163.187741 C = 9827.623060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.004 4.004 3 Si 1.008 2.992 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.416 4.416 8 H 0.097 0.903 9 O -0.196 6.196 10 C 0.138 3.862 11 C -0.265 4.265 12 C 0.127 3.873 13 F -0.144 7.144 14 C -0.208 4.208 15 C -0.048 4.048 16 C 0.061 3.939 17 N -0.637 5.637 18 C 0.502 3.498 19 O -0.556 6.556 20 C 0.125 3.875 21 N -0.186 5.186 22 N 0.018 4.982 23 N -0.359 5.359 24 C 0.437 3.563 25 N -0.793 5.793 26 N -0.368 5.368 27 H 0.276 0.724 28 H 0.137 0.863 29 H 0.155 0.845 30 H 0.146 0.854 31 H 0.427 0.573 32 H 0.172 0.828 33 H 0.192 0.808 34 H 0.428 0.572 35 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.605 -10.541 3.059 12.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.204 4.204 3 Si 0.828 3.172 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.492 4.492 8 H 0.114 0.886 9 O -0.101 6.101 10 C 0.084 3.916 11 C -0.286 4.286 12 C 0.107 3.893 13 F -0.123 7.123 14 C -0.227 4.227 15 C -0.068 4.068 16 C -0.034 4.034 17 N -0.283 5.283 18 C 0.288 3.712 19 O -0.434 6.434 20 C 0.000 4.000 21 N -0.100 5.100 22 N 0.023 4.977 23 N -0.242 5.242 24 C 0.063 3.937 25 N -0.354 5.354 26 N -0.221 5.221 27 H 0.085 0.915 28 H 0.155 0.845 29 H 0.173 0.827 30 H 0.163 0.837 31 H 0.265 0.735 32 H 0.190 0.810 33 H 0.209 0.791 34 H 0.262 0.738 35 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -5.445 -10.838 2.814 12.451 hybrid contribution 0.557 1.247 0.649 1.512 sum -4.888 -9.591 3.464 11.308 Atomic orbital electron populations 1.70083 1.07332 1.29070 1.47022 1.26292 0.96830 1.01873 0.95438 0.84724 0.77877 0.75383 0.79226 1.18851 1.19496 1.18501 1.21689 0.92449 0.81089 1.53975 0.88557 1.83888 1.34539 1.11753 1.79944 1.19109 0.90076 0.87170 0.95237 1.20972 0.94188 0.98978 1.14466 1.17473 0.76967 0.94182 1.00680 1.91434 1.31397 1.97331 1.92139 1.20836 0.95153 0.96339 1.10416 1.20649 0.92973 0.96876 0.96285 1.16960 0.84652 0.90608 1.11146 1.42977 1.05881 1.29150 1.50337 1.21059 0.91552 0.80832 0.77782 1.90765 1.60819 1.44900 1.46880 1.22150 0.92313 0.87447 0.98041 1.52558 1.46780 1.06972 1.03672 1.78215 1.07879 0.89871 1.21783 1.75173 1.27518 1.26524 0.95010 1.22001 0.94119 0.87181 0.90362 1.40980 1.81477 1.13852 0.99131 1.78875 1.33997 1.18567 0.90611 0.91486 0.84525 0.82709 0.83683 0.73492 0.81043 0.79144 0.73820 0.73531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.93 13.67 21.61 0.30 -47.63 16 2 C 0.00 -0.19 5.49 84.83 0.47 0.28 16 3 Si 1.01 39.21 29.55 68.60 2.03 41.24 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 7 C -0.42 -21.63 9.44 67.92 0.64 -20.98 16 8 H 0.10 4.75 5.30 -2.91 -0.02 4.74 16 9 O -0.20 -9.97 9.30 -22.72 -0.21 -10.18 16 10 C 0.14 6.10 6.66 22.69 0.15 6.25 16 11 C -0.27 -11.18 9.11 22.42 0.20 -10.98 16 12 C 0.13 4.75 7.29 22.37 0.16 4.91 16 13 F -0.14 -5.15 17.26 44.97 0.78 -4.37 16 14 C -0.21 -7.00 10.02 22.33 0.22 -6.77 16 15 C -0.05 -1.67 8.65 22.37 0.19 -1.48 16 16 C 0.06 2.33 6.28 38.23 0.24 2.57 16 17 N -0.64 -20.07 5.20 -303.03 -1.58 -21.65 16 18 C 0.50 14.74 7.63 87.66 0.67 15.41 16 19 O -0.56 -20.91 14.19 -3.08 -0.04 -20.95 16 20 C 0.12 2.47 7.23 85.63 0.62 3.09 16 21 N -0.19 -4.98 3.83 -190.79 -0.73 -5.71 16 22 N 0.02 0.51 13.24 37.02 0.49 1.00 16 23 N -0.36 -10.30 12.32 -58.93 -0.73 -11.03 16 24 C 0.44 11.26 9.63 260.82 2.51 13.77 16 25 N -0.79 -12.25 9.13 -58.88 -0.54 -12.79 16 26 N -0.37 -10.55 12.79 -58.91 -0.75 -11.31 16 27 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 28 H 0.14 5.87 5.71 -2.91 -0.02 5.85 16 29 H 0.16 4.27 8.06 -2.91 -0.02 4.24 16 30 H 0.15 4.85 6.48 -2.91 -0.02 4.83 16 31 H 0.43 12.08 8.55 -92.70 -0.79 11.28 16 32 H 0.17 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.19 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.43 4.86 8.96 -92.71 -0.83 4.03 16 35 H 0.43 4.44 8.96 -92.70 -0.83 3.61 16 Total: -1.00 -72.89 325.86 3.88 -69.02 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -1.22 Total: 28.30 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 6.08 Total: 6.07 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -3.54 Total: -109.12 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.26 Total: -31.13 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.78 Total: -4.37 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -72.89 3.88 -69.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362293902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.260 kcal (2) G-P(sol) polarization free energy of solvation -72.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds