Wall clock time and date at job start Fri Apr 10 2020 18:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99883 * 2 1 4 4 H 1.48502 * 109.46929 * 266.95704 * 3 2 1 5 5 H 1.48501 * 109.47057 * 26.95733 * 3 2 1 6 6 H 1.48506 * 109.47270 * 146.95925 * 3 2 1 7 7 C 1.37879 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00006 * 8.04315 * 7 2 1 9 9 C 1.50699 * 119.99852 * 187.75833 * 7 2 1 10 10 O 1.42898 * 112.94809 * 305.60705 * 9 7 2 11 11 C 1.53946 * 113.74240 * 174.00602 * 9 7 2 12 12 N 1.47812 * 86.03860 * 222.08776 * 11 9 7 13 13 C 1.34772 * 134.45275 * 204.64540 * 12 11 9 14 14 O 1.21646 * 119.99981 * 174.83073 * 13 12 11 15 15 C 1.47082 * 120.00334 * 354.82755 * 13 12 11 16 16 C 1.39341 * 120.58447 * 77.23984 * 15 13 12 17 17 C 1.39475 * 118.95833 * 179.97438 * 16 15 13 18 18 C 1.35757 * 120.13074 * 0.02562 * 17 16 15 19 19 N 1.35436 * 121.23092 * 359.97438 * 18 17 16 20 20 C 1.46504 * 119.47153 * 179.97438 * 19 18 17 21 21 C 1.50702 * 109.47129 * 89.99527 * 20 19 18 22 22 O 1.20824 * 120.00071 * 0.02562 * 21 20 19 23 23 O 1.34228 * 119.99467 * 180.02562 * 21 20 19 24 24 C 1.34655 * 121.05436 * 359.72364 * 19 18 17 25 25 O 1.21890 * 120.09805 * 180.28649 * 24 19 18 26 26 C 1.47578 * 91.04906 * 24.55179 * 12 11 9 27 27 H 0.97002 * 120.00395 * 0.02562 * 1 2 3 28 28 H 0.96705 * 113.99435 * 297.51058 * 10 9 7 29 29 H 1.09000 * 113.76773 * 336.36067 * 11 9 7 30 30 H 1.09001 * 113.76594 * 107.74679 * 11 9 7 31 31 H 1.07997 * 120.51934 * 359.95726 * 16 15 13 32 32 H 1.07994 * 119.93326 * 180.02562 * 17 16 15 33 33 H 1.07999 * 119.38808 * 180.02562 * 18 17 16 34 34 H 1.08995 * 109.46761 * 210.00189 * 20 19 18 35 35 H 1.09001 * 109.46802 * 329.99681 * 20 19 18 36 36 H 0.96698 * 116.99112 * 180.02562 * 23 21 20 37 37 H 1.09004 * 113.76700 * 221.15042 * 26 12 11 38 38 H 1.08998 * 113.87294 * 89.76683 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5609 2.0092 -1.3981 5 1 1.4158 2.6704 0.6347 6 1 3.5130 1.4596 0.7634 7 6 2.0045 -1.1941 0.0005 8 1 1.4725 -2.1248 -0.1299 9 6 3.5012 -1.1999 0.1767 10 8 4.1765 -0.3659 -0.7669 11 6 4.1051 -2.6105 0.3010 12 7 4.9482 -2.0435 1.3746 13 6 6.1450 -2.3652 1.9042 14 8 6.6525 -1.6449 2.7429 15 6 6.8376 -3.5873 1.4682 16 6 7.5085 -3.6249 0.2476 17 6 8.1543 -4.8014 -0.1321 18 6 8.1242 -5.8882 0.6809 19 7 7.4740 -5.8588 1.8687 20 6 7.4657 -7.0543 2.7155 21 6 8.6512 -7.0196 3.6453 22 8 9.4236 -6.0913 3.6050 23 8 8.8490 -8.0199 4.5181 24 6 6.8395 -4.7469 2.2859 25 8 6.2642 -4.7382 3.3604 26 6 3.9547 -0.9829 1.6318 27 1 -0.4851 0.8400 -0.0004 28 1 4.0598 -0.6389 -1.6872 29 1 3.3970 -3.3624 0.6492 30 1 4.6658 -2.9273 -0.5784 31 1 7.5278 -2.7568 -0.3946 32 1 8.6794 -4.8479 -1.0747 33 1 8.6287 -6.7929 0.3752 34 1 6.5461 -7.0790 3.3000 35 1 7.5217 -7.9441 2.0885 36 1 9.6229 -7.9532 5.0941 37 1 4.3956 -0.0025 1.8129 38 1 3.2017 -1.2538 2.3718 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574481327.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:24 Heat of formation + Delta-G solvation = -112.765611 kcal Electronic energy + Delta-G solvation = -27252.823589 eV Core-core repulsion = 23063.465834 eV Total energy + Delta-G solvation = -4189.357756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.91278 -40.38183 -39.51734 -37.53929 -37.09782 -36.60716 -34.75723 -34.21887 -32.46258 -30.64351 -29.32380 -28.64033 -25.77439 -25.58733 -24.37751 -23.59033 -22.00834 -20.36204 -19.02053 -18.74077 -17.93138 -17.82888 -17.49624 -17.20317 -16.87728 -16.24002 -16.04176 -15.54182 -15.14500 -15.00527 -14.72403 -14.66330 -14.00038 -13.58181 -13.40563 -13.22125 -13.08199 -12.85560 -12.69340 -12.27468 -12.20853 -12.08601 -12.00057 -11.86042 -11.26506 -11.23179 -10.78826 -10.58761 -10.39632 -10.21843 -10.05799 -9.64366 -9.08977 -8.75726 -8.69252 -8.20143 -7.93477 -6.26181 -4.40233 0.37890 1.64600 1.67449 1.83817 2.55693 3.06558 3.29968 3.40700 3.47057 3.58649 3.65844 4.07401 4.14502 4.42551 4.54203 4.58491 4.69005 4.77614 4.81815 4.97167 5.01426 5.11552 5.49464 5.54873 5.72173 5.89555 5.93685 5.97483 6.13322 6.20272 6.27940 6.47291 6.52442 6.67676 6.81690 7.33310 7.36801 7.76919 8.08643 8.30193 8.62395 8.67161 8.77328 9.35776 10.82777 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.026628 B = 0.003178 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.257724 B = 8808.962481 C = 8944.475924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.086 3.914 3 Si 0.909 3.091 4 H -0.281 1.281 5 H -0.308 1.308 6 H -0.256 1.256 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.200 3.800 10 O -0.558 6.558 11 C 0.083 3.917 12 N -0.627 5.627 13 C 0.599 3.401 14 O -0.542 6.542 15 C -0.229 4.229 16 C 0.018 3.982 17 C -0.219 4.219 18 C 0.140 3.860 19 N -0.486 5.486 20 C 0.101 3.899 21 C 0.465 3.535 22 O -0.496 6.496 23 O -0.512 6.512 24 C 0.541 3.459 25 O -0.527 6.527 26 C 0.117 3.883 27 H 0.268 0.732 28 H 0.370 0.630 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.165 0.835 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.417 0.583 37 H 0.075 0.925 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.935 -18.760 -2.037 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.120 4.120 3 Si 0.739 3.261 4 H -0.207 1.207 5 H -0.237 1.237 6 H -0.180 1.180 7 C -0.590 4.590 8 H 0.102 0.898 9 C 0.160 3.840 10 O -0.365 6.365 11 C -0.040 4.040 12 N -0.361 5.361 13 C 0.386 3.614 14 O -0.420 6.420 15 C -0.236 4.236 16 C -0.004 4.004 17 C -0.242 4.242 18 C 0.014 3.986 19 N -0.199 5.199 20 C -0.022 4.022 21 C 0.304 3.696 22 O -0.383 6.383 23 O -0.324 6.324 24 C 0.341 3.659 25 O -0.407 6.407 26 C -0.004 4.004 27 H 0.078 0.922 28 H 0.218 0.782 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.161 0.839 32 H 0.172 0.828 33 H 0.183 0.817 34 H 0.164 0.836 35 H 0.157 0.843 36 H 0.276 0.724 37 H 0.093 0.907 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 16.884 -17.793 -0.470 24.533 hybrid contribution 0.838 0.457 -0.189 0.973 sum 17.722 -17.336 -0.659 24.800 Atomic orbital electron populations 1.69945 1.06713 1.27910 1.47162 1.25007 0.94686 1.00075 0.92243 0.86369 0.79531 0.81224 0.78955 1.20731 1.23682 1.18030 1.21086 0.88268 0.95561 1.54035 0.89818 1.20545 0.91528 0.85137 0.86805 1.86315 1.75427 1.55944 1.18819 1.24073 0.91102 1.00193 0.88661 1.50149 1.16366 1.32213 1.37359 1.16970 0.80437 0.83536 0.80416 1.90777 1.66128 1.52009 1.33049 1.20952 1.09078 0.95932 0.97663 1.21899 0.88395 0.97713 0.92401 1.20585 1.08244 0.92553 1.02803 1.22001 0.91815 1.00537 0.84245 1.45019 1.44764 1.13151 1.16945 1.21274 0.98157 0.88689 0.94110 1.23530 0.86488 0.79600 0.79939 1.90826 1.45580 1.34131 1.67723 1.84464 1.51831 1.47473 1.48623 1.16726 0.79927 0.82170 0.87028 1.90963 1.45326 1.82095 1.22274 1.23820 0.87341 0.90736 0.98537 0.92200 0.78248 0.89364 0.91273 0.83885 0.82801 0.81747 0.83649 0.84271 0.72364 0.90695 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.46 13.96 55.43 0.77 -24.69 16 2 C 0.09 2.34 5.47 -17.82 -0.10 2.24 16 3 Si 0.91 22.25 25.67 -169.99 -4.36 17.89 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.31 -7.67 7.11 56.52 0.40 -7.26 16 6 H -0.26 -6.29 5.27 56.52 0.30 -6.00 16 7 C -0.55 -14.10 9.18 -34.44 -0.32 -14.41 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C 0.20 4.39 0.91 -90.84 -0.08 4.31 16 10 O -0.56 -11.67 10.33 -35.23 -0.36 -12.04 16 11 C 0.08 1.54 8.00 -2.84 -0.02 1.51 16 12 N -0.63 -13.26 3.61 -179.50 -0.65 -13.91 16 13 C 0.60 13.05 7.04 -12.68 -0.09 12.96 16 14 O -0.54 -13.94 17.84 5.24 0.09 -13.85 16 15 C -0.23 -3.94 5.41 -104.51 -0.57 -4.51 16 16 C 0.02 0.22 9.91 -38.71 -0.38 -0.16 16 17 C -0.22 -1.77 9.99 -40.01 -0.40 -2.17 16 18 C 0.14 1.02 10.25 -16.85 -0.17 0.85 16 19 N -0.49 -5.26 2.07 -120.63 -0.25 -5.51 16 20 C 0.10 0.74 5.91 -5.19 -0.03 0.71 16 21 C 0.46 4.27 8.39 36.01 0.30 4.57 16 22 O -0.50 -6.78 17.19 -18.75 -0.32 -7.10 16 23 O -0.51 -3.12 13.42 -39.25 -0.53 -3.65 16 24 C 0.54 9.00 7.43 -14.92 -0.11 8.89 16 25 O -0.53 -10.79 16.11 5.02 0.08 -10.71 16 26 C 0.12 2.67 7.36 -2.97 -0.02 2.65 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.37 6.24 9.12 45.56 0.42 6.66 16 29 H 0.09 1.62 8.09 -51.93 -0.42 1.20 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.17 0.38 8.02 -52.49 -0.42 -0.04 16 34 H 0.15 1.15 7.39 -51.93 -0.38 0.76 16 35 H 0.14 0.28 8.00 -51.93 -0.42 -0.14 16 36 H 0.42 1.02 9.10 45.56 0.41 1.43 16 37 H 0.07 1.79 6.94 -51.93 -0.36 1.43 16 38 H 0.10 2.20 8.09 -51.93 -0.42 1.78 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -41.70 340.30 -4.91 -46.61 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -2.52 Total: 4.37 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: -1.99 Total: 17.45 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.12 Total: -44.11 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -1.04 Total: -47.34 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.36 Total: 17.89 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -41.70 -4.91 -46.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574481327.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.151 kcal (2) G-P(sol) polarization free energy of solvation -41.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds