Wall clock time and date at job start Fri Apr 10 2020 18:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 C 1.50701 * 109.47046 * 120.00042 * 2 1 3 5 5 H 1.08007 * 120.00171 * 120.00184 * 4 2 1 6 6 C 1.37878 * 120.00079 * 299.99866 * 4 2 1 7 7 N 1.31509 * 119.99852 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47151 * 89.99727 * 8 6 4 10 10 H 1.48501 * 109.47284 * 210.00039 * 8 6 4 11 11 H 1.48501 * 109.46883 * 330.00131 * 8 6 4 12 12 N 1.46498 * 109.47138 * 239.99661 * 2 1 3 13 13 C 1.46506 * 120.00239 * 300.00351 * 12 2 1 14 14 S 1.65597 * 119.99910 * 119.72126 * 12 2 1 15 15 O 1.42101 * 106.40154 * 23.82013 * 14 12 2 16 16 O 1.42106 * 106.40098 * 156.73670 * 14 12 2 17 17 N 1.65596 * 107.22389 * 270.27980 * 14 12 2 18 18 C 1.46498 * 119.99862 * 64.99463 * 17 14 12 19 19 H 1.09000 * 110.45911 * 335.70322 * 18 17 14 20 20 C 1.54505 * 110.50979 * 98.31029 * 18 17 14 21 21 C 1.54802 * 103.91288 * 118.61236 * 20 18 17 22 22 O 1.44425 * 104.85449 * 336.11741 * 21 20 18 23 23 C 1.44427 * 105.27660 * 40.46558 * 22 21 20 24 24 H 1.09003 * 110.37242 * 78.31127 * 23 22 21 25 25 C 1.50694 * 110.46943 * 200.60852 * 23 22 21 26 26 O 1.20832 * 119.99881 * 0.43345 * 25 23 22 27 27 O 1.34226 * 120.00461 * 180.43498 * 25 23 22 28 28 H 1.08993 * 109.47037 * 60.00055 * 1 2 3 29 29 H 1.09007 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47126 * 299.99981 * 1 2 3 31 31 H 0.97007 * 120.00297 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46892 * 269.72399 * 13 12 2 33 33 H 1.09000 * 109.46803 * 29.71572 * 13 12 2 34 34 H 1.09000 * 109.47214 * 149.72366 * 13 12 2 35 35 H 0.97000 * 119.99918 * 245.00321 * 17 14 12 36 36 H 1.08996 * 110.51417 * 237.28950 * 20 18 17 37 37 H 1.08996 * 110.51276 * 0.02562 * 20 18 17 38 38 H 1.08997 * 110.39029 * 217.25134 * 21 20 18 39 39 H 1.08998 * 110.39565 * 94.99341 * 21 20 18 40 40 H 0.96693 * 117.00354 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.6305 -0.5440 4.4119 10 1 1.3444 -0.9490 5.1124 11 1 2.4880 -2.5654 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4280 14 16 2.9647 0.1161 -2.2897 15 8 3.5762 1.1845 -1.5799 16 8 3.7037 -0.8757 -2.9894 17 7 1.9494 0.8114 -3.3978 18 6 1.0189 1.8630 -2.9800 19 1 0.8034 1.7799 -1.9147 20 6 1.5959 3.2582 -3.3083 21 6 0.5689 3.8626 -4.2963 22 8 -0.0903 2.7223 -4.8888 23 6 -0.2861 1.7897 -3.8035 24 1 -1.1374 2.0910 -3.1931 25 6 -0.4918 0.3956 -4.3374 26 8 -0.4684 0.1953 -5.5287 27 8 -0.7010 -0.6238 -3.4895 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.7089 1.1614 3.4844 32 1 2.4182 -2.7377 -0.9758 33 1 0.6926 -2.3015 -0.9803 34 1 1.6190 -2.2841 -2.5002 35 1 1.9707 0.5224 -4.3235 36 1 1.6635 3.8656 -2.4058 37 1 2.5733 3.1655 -3.7818 38 1 1.0779 4.4471 -5.0628 39 1 -0.1516 4.4828 -3.7632 40 1 -0.8281 -1.4997 -3.8789 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:38 Heat of formation + Delta-G solvation = -198.351872 kcal Electronic energy + Delta-G solvation = -28012.188186 eV Core-core repulsion = 23954.563083 eV Total energy + Delta-G solvation = -4057.625103 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.83036 -39.05029 -36.76422 -36.26219 -36.08696 -35.29434 -34.79615 -32.61904 -30.74669 -29.44990 -29.10756 -25.62966 -25.19621 -24.35374 -21.87237 -21.20433 -20.83739 -19.21819 -18.17176 -17.68115 -17.37518 -16.83109 -16.41292 -16.15496 -15.98208 -15.56230 -15.12904 -14.83972 -14.64176 -14.24201 -13.58188 -13.29785 -13.25080 -12.98363 -12.84518 -12.30912 -12.02005 -11.90019 -11.75946 -11.59870 -11.53228 -11.46724 -11.34512 -11.25822 -11.16727 -10.99503 -10.85348 -10.60247 -10.50089 -10.29926 -10.20297 -10.04204 -9.50482 -9.29406 -8.49158 -8.02468 -6.12203 -4.17890 1.09877 2.05829 2.53699 3.26598 3.33304 3.34213 3.37914 3.81753 4.01893 4.33028 4.37911 4.57203 4.75902 4.83227 4.91734 5.03674 5.16263 5.17525 5.21508 5.50627 5.53789 5.62292 5.86363 6.00186 6.13257 6.33563 6.38509 6.44438 6.58580 6.72302 6.77359 6.91234 6.98002 7.42013 7.59401 7.74539 7.82003 7.99127 8.23047 8.84204 9.48152 10.93466 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.005076 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.358695 B = 5515.124923 C = 5638.382457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.057 0.943 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.985 5.985 13 C 0.115 3.885 14 S 2.776 3.224 15 O -0.970 6.970 16 O -0.994 6.994 17 N -1.128 6.128 18 C 0.137 3.863 19 H 0.125 0.875 20 C -0.170 4.170 21 C 0.044 3.956 22 O -0.347 6.347 23 C 0.077 3.923 24 H 0.121 0.879 25 C 0.494 3.506 26 O -0.503 6.503 27 O -0.496 6.496 28 H 0.013 0.987 29 H 0.036 0.964 30 H 0.091 0.909 31 H 0.263 0.737 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.410 0.590 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 2.733 -10.858 12.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.075 0.925 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.828 5.828 13 C -0.032 4.032 14 S 2.785 3.215 15 O -0.953 6.953 16 O -0.978 6.978 17 N -0.885 5.885 18 C 0.029 3.971 19 H 0.143 0.857 20 C -0.209 4.209 21 C -0.033 4.033 22 O -0.265 6.265 23 C 0.017 3.983 24 H 0.138 0.862 25 C 0.334 3.666 26 O -0.390 6.390 27 O -0.307 6.307 28 H 0.032 0.968 29 H 0.055 0.945 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.243 0.757 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -4.158 3.270 -10.906 12.122 hybrid contribution -0.169 -1.137 0.415 1.222 sum -4.327 2.133 -10.492 11.548 Atomic orbital electron populations 1.22143 0.97962 1.00141 1.00420 1.18771 0.91428 0.92821 0.80637 0.92541 1.21317 1.31504 1.13008 0.89981 0.91976 1.24881 0.94929 0.95014 0.98959 1.69838 1.36585 1.22730 1.23794 0.86508 0.78656 0.79995 0.82305 1.20603 1.21212 1.19907 1.57630 1.70068 1.19883 1.35204 1.21099 1.01683 0.81773 0.98608 1.02130 0.73607 0.73268 0.72488 1.93610 1.73539 1.55860 1.72277 1.93561 1.69552 1.60015 1.74655 1.56507 1.56674 1.50953 1.24393 1.22050 0.86903 0.87818 1.00362 0.85745 1.23583 1.00598 0.95567 1.01181 1.23637 0.94219 0.88504 0.96916 1.89239 1.79787 1.27969 1.29555 1.22706 1.00187 0.86229 0.89215 0.86208 1.22555 0.72337 0.87192 0.84476 1.90746 1.46073 1.84865 1.17289 1.84576 1.83099 1.20142 1.42908 0.96759 0.94516 0.89038 0.92714 0.93486 0.90733 0.93559 0.75690 0.88291 0.89076 0.88126 0.91164 0.72812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.83 37.16 0.33 -2.64 16 2 C 0.27 5.95 1.94 -69.08 -0.13 5.82 16 3 H 0.06 1.39 6.74 -51.93 -0.35 1.04 16 4 C -0.52 -13.26 8.37 -34.44 -0.29 -13.55 16 5 H 0.06 1.61 7.65 -52.48 -0.40 1.20 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.46 11.32 55.43 0.63 -22.83 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.98 -18.89 3.12 -115.85 -0.36 -19.25 16 13 C 0.11 1.91 9.53 59.85 0.57 2.48 16 14 S 2.78 51.85 6.02 -107.50 -0.65 51.20 16 15 O -0.97 -21.20 16.47 -57.17 -0.94 -22.15 16 16 O -0.99 -20.30 17.21 -57.17 -0.98 -21.29 16 17 N -1.13 -16.36 4.74 -3.56 -0.02 -16.38 16 18 C 0.14 1.80 3.52 -66.36 -0.23 1.57 16 19 H 0.12 1.76 5.58 -51.93 -0.29 1.47 16 20 C -0.17 -1.92 6.90 -24.99 -0.17 -2.09 16 21 C 0.04 0.42 7.64 38.11 0.29 0.71 16 22 O -0.35 -4.38 10.92 -54.44 -0.59 -4.98 16 23 C 0.08 0.93 3.78 -27.11 -0.10 0.82 16 24 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 25 C 0.49 6.34 6.01 36.00 0.22 6.56 16 26 O -0.50 -7.84 17.31 -25.28 -0.44 -8.27 16 27 O -0.50 -5.33 13.42 -39.25 -0.53 -5.86 16 28 H 0.01 0.23 6.75 -51.93 -0.35 -0.12 16 29 H 0.04 0.71 6.66 -51.92 -0.35 0.37 16 30 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 31 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.17 6.43 -51.93 -0.33 0.84 16 34 H 0.05 0.64 7.79 -51.93 -0.40 0.24 16 35 H 0.41 5.58 7.98 -34.47 -0.28 5.30 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.07 7.96 -51.93 -0.41 0.65 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.41 2.80 9.10 45.56 0.41 3.21 16 LS Contribution 340.96 15.07 5.14 5.14 Total: -1.00 -33.64 340.96 -7.70 -41.33 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.31 Total: 6.63 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 0.38 Total: 1.24 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.25 Total: -58.46 kcal Atomic # 8 Polarization: -59.06 SS G_CDS: -3.48 Total: -62.54 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 51.85 SS G_CDS: -0.65 Total: 51.20 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.64 -7.70 -41.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.017 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds