Wall clock time and date at job start Fri Apr 10 2020 18:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 C 1.50701 * 109.47046 * 120.00042 * 2 1 3 5 5 H 1.08007 * 120.00171 * 120.00184 * 4 2 1 6 6 C 1.37878 * 120.00079 * 299.99866 * 4 2 1 7 7 N 1.31509 * 119.99852 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47151 * 89.99727 * 8 6 4 10 10 H 1.48501 * 109.47284 * 210.00039 * 8 6 4 11 11 H 1.48501 * 109.46883 * 330.00131 * 8 6 4 12 12 N 1.46498 * 109.47138 * 239.99661 * 2 1 3 13 13 C 1.46506 * 120.00239 * 300.00351 * 12 2 1 14 14 S 1.65597 * 119.99910 * 119.72126 * 12 2 1 15 15 O 1.42101 * 106.40154 * 23.82013 * 14 12 2 16 16 O 1.42106 * 106.40098 * 156.73670 * 14 12 2 17 17 N 1.65596 * 107.22389 * 270.27980 * 14 12 2 18 18 C 1.46498 * 119.99862 * 64.99463 * 17 14 12 19 19 H 1.09000 * 110.45911 * 335.70322 * 18 17 14 20 20 C 1.54505 * 110.50979 * 98.31029 * 18 17 14 21 21 C 1.54802 * 103.91288 * 118.61236 * 20 18 17 22 22 O 1.44425 * 104.85449 * 336.11741 * 21 20 18 23 23 C 1.44427 * 105.27660 * 40.46558 * 22 21 20 24 24 H 1.09003 * 110.37242 * 78.31127 * 23 22 21 25 25 C 1.50694 * 110.46943 * 200.60852 * 23 22 21 26 26 O 1.20832 * 119.99881 * 0.43345 * 25 23 22 27 27 O 1.34226 * 120.00461 * 180.43498 * 25 23 22 28 28 H 1.08993 * 109.47037 * 60.00055 * 1 2 3 29 29 H 1.09007 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47126 * 299.99981 * 1 2 3 31 31 H 0.97007 * 120.00297 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46892 * 269.72399 * 13 12 2 33 33 H 1.09000 * 109.46803 * 29.71572 * 13 12 2 34 34 H 1.09000 * 109.47214 * 149.72366 * 13 12 2 35 35 H 0.97000 * 119.99918 * 245.00321 * 17 14 12 36 36 H 1.08996 * 110.51417 * 237.28950 * 20 18 17 37 37 H 1.08996 * 110.51276 * 0.02562 * 20 18 17 38 38 H 1.08997 * 110.39029 * 217.25134 * 21 20 18 39 39 H 1.08998 * 110.39565 * 94.99341 * 21 20 18 40 40 H 0.96693 * 117.00354 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.6305 -0.5440 4.4119 10 1 1.3444 -0.9490 5.1124 11 1 2.4880 -2.5654 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4280 14 16 2.9647 0.1161 -2.2897 15 8 3.5762 1.1845 -1.5799 16 8 3.7037 -0.8757 -2.9894 17 7 1.9494 0.8114 -3.3978 18 6 1.0189 1.8630 -2.9800 19 1 0.8034 1.7799 -1.9147 20 6 1.5959 3.2582 -3.3083 21 6 0.5689 3.8626 -4.2963 22 8 -0.0903 2.7223 -4.8888 23 6 -0.2861 1.7897 -3.8035 24 1 -1.1374 2.0910 -3.1931 25 6 -0.4918 0.3956 -4.3374 26 8 -0.4684 0.1953 -5.5287 27 8 -0.7010 -0.6238 -3.4895 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.7089 1.1614 3.4844 32 1 2.4182 -2.7377 -0.9758 33 1 0.6926 -2.3015 -0.9803 34 1 1.6190 -2.2841 -2.5002 35 1 1.9707 0.5224 -4.3235 36 1 1.6635 3.8656 -2.4058 37 1 2.5733 3.1655 -3.7818 38 1 1.0779 4.4471 -5.0628 39 1 -0.1516 4.4828 -3.7632 40 1 -0.8281 -1.4997 -3.8789 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592222377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:37 Heat of formation + Delta-G solvation = -225.789208 kcal Electronic energy + Delta-G solvation = -28013.377958 eV Core-core repulsion = 23954.563083 eV Total energy + Delta-G solvation = -4058.814875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.78815 -39.98354 -38.36173 -37.85166 -37.08951 -36.90945 -35.90075 -34.47220 -31.66834 -30.85488 -30.39280 -27.20134 -26.96772 -25.27096 -22.78200 -22.53803 -22.15611 -20.57629 -19.18908 -19.11675 -18.50790 -18.29246 -18.09743 -17.36157 -17.10196 -16.75760 -16.46942 -16.13728 -15.74203 -15.39152 -15.14499 -14.80037 -14.55436 -14.17378 -14.03509 -13.69756 -13.45065 -13.35372 -13.19166 -13.12687 -12.95068 -12.84527 -12.70322 -12.54926 -12.53910 -12.35062 -12.27085 -12.13381 -12.04824 -11.83782 -11.59012 -11.12015 -11.05770 -10.58964 -10.43027 -9.62855 -8.07283 -6.18490 -0.39301 1.07879 1.44425 1.47739 1.55170 1.68424 1.98223 2.45998 2.57544 2.94435 3.21779 3.33713 3.39720 3.71324 3.89073 3.95295 4.11762 4.15359 4.23169 4.32827 4.65284 4.75565 4.82913 4.90059 4.94707 5.09380 5.12829 5.16527 5.23297 5.26132 5.52125 5.61977 5.67614 5.71636 5.93493 5.97205 6.22566 6.39141 6.88132 6.97128 7.49812 8.96231 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.005076 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.358695 B = 5515.124923 C = 5638.382457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.273 3.727 3 H 0.031 0.969 4 C -0.537 4.537 5 H 0.052 0.948 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.947 3.053 9 H -0.285 1.285 10 H -0.280 1.280 11 H -0.271 1.271 12 N -0.988 5.988 13 C 0.109 3.891 14 S 2.794 3.206 15 O -1.005 7.005 16 O -1.013 7.013 17 N -1.113 6.113 18 C 0.129 3.871 19 H 0.115 0.885 20 C -0.172 4.172 21 C 0.047 3.953 22 O -0.366 6.366 23 C 0.079 3.921 24 H 0.148 0.852 25 C 0.497 3.503 26 O -0.534 6.534 27 O -0.493 6.493 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.264 0.736 32 H 0.035 0.965 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.417 0.583 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.109 2.760 -11.401 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.169 3.831 3 H 0.048 0.952 4 C -0.577 4.577 5 H 0.070 0.930 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.774 3.226 9 H -0.212 1.212 10 H -0.205 1.205 11 H -0.195 1.195 12 N -0.831 5.831 13 C -0.037 4.037 14 S 2.803 3.197 15 O -0.988 6.988 16 O -0.997 6.997 17 N -0.873 5.873 18 C 0.021 3.979 19 H 0.133 0.867 20 C -0.212 4.212 21 C -0.029 4.029 22 O -0.285 6.285 23 C 0.019 3.981 24 H 0.165 0.835 25 C 0.339 3.661 26 O -0.424 6.424 27 O -0.307 6.307 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.252 0.748 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.135 0.865 39 H 0.113 0.887 40 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -5.225 3.266 -11.448 13.001 hybrid contribution 0.181 -1.148 0.550 1.286 sum -5.044 2.118 -10.897 12.193 Atomic orbital electron populations 1.21914 0.96091 1.00497 1.00683 1.18480 0.92655 0.91289 0.80677 0.95176 1.21646 1.31469 1.12936 0.91638 0.93009 1.25490 0.95301 0.95724 1.01177 1.69932 1.37146 1.23434 1.24205 0.85734 0.77908 0.79190 0.79814 1.21159 1.20519 1.19520 1.57483 1.69986 1.20953 1.34662 1.21289 1.01759 0.80087 1.00563 1.01364 0.73482 0.72536 0.72300 1.93562 1.74793 1.57055 1.73437 1.93527 1.70520 1.60728 1.74906 1.56041 1.56449 1.51030 1.23820 1.22230 0.87463 0.88147 1.00095 0.86699 1.23606 1.00804 0.94738 1.02025 1.23819 0.94173 0.87860 0.97051 1.89231 1.80110 1.28851 1.30287 1.22827 1.00139 0.86008 0.89160 0.83520 1.22737 0.71473 0.87785 0.84076 1.90738 1.47692 1.85381 1.18600 1.84542 1.82475 1.21005 1.42647 0.93531 0.93999 0.91655 0.92700 0.94609 0.89719 0.90662 0.74815 0.87698 0.89834 0.86549 0.88695 0.70791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 8.83 71.98 0.64 -4.54 16 2 C 0.27 12.13 1.94 44.25 0.09 12.22 16 3 H 0.03 1.51 6.74 -2.39 -0.02 1.50 16 4 C -0.54 -27.53 8.37 25.60 0.21 -27.32 16 5 H 0.05 2.69 7.65 -2.91 -0.02 2.67 16 6 C 0.02 1.21 5.30 84.66 0.45 1.66 16 7 N -0.91 -47.84 11.32 21.45 0.24 -47.60 16 8 Si 0.95 41.82 29.54 68.60 2.03 43.85 16 9 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 N -0.99 -37.15 3.12 -520.44 -1.62 -38.78 16 13 C 0.11 3.44 9.53 127.77 1.22 4.66 16 14 S 2.79 103.06 6.02 -56.49 -0.34 102.72 16 15 O -1.01 -44.38 16.47 -128.00 -2.11 -46.48 16 16 O -1.01 -40.71 17.21 -128.00 -2.20 -42.91 16 17 N -1.11 -30.95 4.74 -165.17 -0.78 -31.74 16 18 C 0.13 3.17 3.52 46.01 0.16 3.33 16 19 H 0.12 3.09 5.58 -2.39 -0.01 3.07 16 20 C -0.17 -3.63 6.90 31.72 0.22 -3.41 16 21 C 0.05 0.77 7.64 72.60 0.55 1.33 16 22 O -0.37 -8.39 10.92 -130.61 -1.43 -9.82 16 23 C 0.08 1.71 3.78 30.35 0.11 1.82 16 24 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 25 C 0.50 11.71 6.01 71.23 0.43 12.14 16 26 O -0.53 -15.82 17.31 28.18 0.49 -15.34 16 27 O -0.49 -9.29 13.42 -51.37 -0.69 -9.98 16 28 H 0.05 1.47 6.75 -2.39 -0.02 1.46 16 29 H 0.04 1.56 6.66 -2.38 -0.02 1.54 16 30 H 0.06 2.94 6.07 -2.39 -0.01 2.93 16 31 H 0.26 13.30 8.31 -92.70 -0.77 12.53 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 2.50 6.43 -2.39 -0.02 2.49 16 34 H 0.07 1.92 7.79 -2.39 -0.02 1.91 16 35 H 0.42 10.78 7.98 -96.75 -0.77 10.01 16 36 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.08 1.88 7.96 -2.39 -0.02 1.86 16 38 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.43 4.66 9.10 -74.06 -0.67 3.99 16 Total: -1.00 -71.65 340.96 -2.68 -74.33 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.34 Total: 19.87 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 4.08 Total: 1.87 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -2.16 Total: -118.11 kcal Atomic # 8 Polarization: -118.60 SS G_CDS: -5.94 Total: -124.54 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 103.06 SS G_CDS: -0.34 Total: 102.72 kcal Total: -71.65 -2.68 -74.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.455 kcal (2) G-P(sol) polarization free energy of solvation -71.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds