Wall clock time and date at job start Fri Apr 10 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99725 * 2 1 4 4 C 1.53002 * 109.46881 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47282 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47451 * 180.02562 * 5 4 3 7 7 C 1.34776 * 119.99960 * 180.02562 * 6 5 4 8 8 O 1.21359 * 120.00605 * 359.97438 * 7 6 5 9 9 C 1.49325 * 119.99641 * 179.97438 * 7 6 5 10 10 O 1.21390 * 120.00156 * 359.97438 * 9 7 6 11 11 N 1.34778 * 119.99639 * 179.97438 * 9 7 6 12 12 C 1.39748 * 119.99801 * 175.49598 * 11 9 7 13 13 C 1.39003 * 120.00385 * 35.14789 * 12 11 9 14 14 C 1.37963 * 119.99187 * 180.02562 * 13 12 11 15 15 C 1.38940 * 120.00750 * 359.97438 * 14 13 12 16 16 O 1.35750 * 119.99452 * 179.97438 * 15 14 13 17 17 C 1.34805 * 116.99984 * 5.34541 * 16 15 14 18 18 H 1.07993 * 120.00053 * 354.97126 * 17 16 15 19 19 C 1.38655 * 120.00023 * 174.96178 * 17 16 15 20 20 N 1.31557 * 119.99903 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00081 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47300 * 89.99707 * 21 19 17 23 23 H 1.48502 * 109.47338 * 209.99911 * 21 19 17 24 24 H 1.48507 * 109.47285 * 330.00046 * 21 19 17 25 25 C 1.38937 * 120.01341 * 0.27453 * 15 14 13 26 26 C 1.37972 * 120.00636 * 359.44976 * 25 15 14 27 27 H 1.09000 * 109.47454 * 300.00396 * 1 2 3 28 28 H 1.09005 * 109.46548 * 60.00555 * 1 2 3 29 29 H 1.08997 * 109.46646 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47326 * 59.99992 * 3 2 1 31 31 H 1.09000 * 109.46754 * 299.99195 * 3 2 1 32 32 H 1.09006 * 109.46964 * 59.99674 * 4 3 2 33 33 H 1.08997 * 109.47448 * 300.00043 * 4 3 2 34 34 H 1.09006 * 109.47051 * 60.00139 * 5 4 3 35 35 H 1.08995 * 109.47685 * 300.00279 * 5 4 3 36 36 H 0.97004 * 119.99896 * 359.97438 * 6 5 4 37 37 H 0.96997 * 120.00587 * 355.50623 * 11 9 7 38 38 H 1.08001 * 120.00256 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.99820 * 179.97438 * 14 13 12 40 40 H 0.96998 * 120.00042 * 180.02562 * 20 19 17 41 41 H 1.07997 * 119.99675 * 179.70581 * 25 15 14 42 42 H 1.08001 * 120.00615 * 180.27027 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6182 2.4667 0.0000 7 6 6.3821 3.5771 0.0000 8 8 5.8602 4.6728 -0.0005 9 6 7.8707 3.4592 0.0006 10 8 8.3927 2.3633 0.0015 11 7 8.6346 4.5695 0.0001 12 6 10.0246 4.4614 0.0956 13 6 10.6820 3.3960 -0.5083 14 6 12.0543 3.2892 -0.4134 15 6 12.7790 4.2467 0.2854 16 8 14.1292 4.1410 0.3791 17 6 14.7153 3.1481 -0.3192 18 1 14.1081 2.4319 -0.8528 19 6 16.0977 3.0464 -0.3527 20 7 16.6697 2.0776 -1.0346 21 14 17.1479 4.2849 0.5705 22 1 17.3935 3.7946 1.9507 23 1 18.4450 4.4556 -0.1322 24 1 16.4403 5.5893 0.6273 25 6 12.1216 5.3089 0.8936 26 6 10.7500 5.4194 0.7942 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8901 32 1 3.8574 0.6435 -0.8891 33 1 3.8568 0.6440 0.8908 34 1 3.8358 3.1238 0.8896 35 1 3.8365 3.1228 -0.8903 36 1 6.0354 1.5910 0.0008 37 1 8.2196 5.4438 -0.0665 38 1 10.1186 2.6514 -1.0512 39 1 12.5651 2.4612 -0.8822 40 1 17.6368 2.0062 -1.0577 41 1 12.6848 6.0504 1.4407 42 1 10.2394 6.2475 1.2632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048601726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:49 Heat of formation + Delta-G solvation = -134.448550 kcal Electronic energy + Delta-G solvation = -25293.702520 eV Core-core repulsion = 21239.237616 eV Total energy + Delta-G solvation = -4054.464904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.09935 -40.89947 -39.92796 -38.94208 -38.29570 -36.78809 -35.46084 -34.37516 -33.00427 -31.94016 -30.15283 -28.32136 -27.35564 -26.51204 -24.94223 -23.97358 -22.83705 -22.60467 -21.34033 -20.23815 -19.51692 -19.08113 -18.42267 -17.56166 -17.46691 -17.38497 -16.99264 -16.59446 -16.28669 -15.91770 -15.76916 -15.66761 -15.58797 -15.47974 -15.06315 -14.75709 -14.47565 -14.22591 -14.08980 -13.49843 -13.42773 -13.32355 -13.01489 -12.88732 -12.76368 -12.66471 -12.47217 -12.11538 -12.04880 -11.99603 -11.52818 -11.18031 -10.80171 -10.66847 -10.62464 -10.37025 -9.90051 -8.76940 -8.49207 -6.21698 0.02835 0.48261 0.65096 1.19793 1.34278 1.38766 1.54403 2.04359 2.29513 2.45723 2.74363 2.88419 3.01165 3.14892 3.32986 3.92558 3.98733 4.04447 4.06194 4.11943 4.42446 4.42877 4.48445 4.50035 4.55433 4.57172 4.60616 4.64353 4.87775 4.97314 4.98489 5.05766 5.14771 5.16286 5.29794 5.37583 5.54043 5.72596 5.82637 5.90027 6.14284 6.21526 6.27771 6.66648 6.84264 6.86654 7.55950 8.62196 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.031358 B = 0.001823 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.708823 B =15351.534790 C =16081.069657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.062 3.938 4 C -0.126 4.126 5 C 0.122 3.878 6 N -0.689 5.689 7 C 0.521 3.479 8 O -0.534 6.534 9 C 0.498 3.502 10 O -0.531 6.531 11 N -0.619 5.619 12 C 0.057 3.943 13 C -0.074 4.074 14 C -0.222 4.222 15 C 0.118 3.882 16 O -0.237 6.237 17 C -0.401 4.401 18 H 0.079 0.921 19 C 0.010 3.990 20 N -0.923 5.923 21 Si 0.973 3.027 22 H -0.266 1.266 23 H -0.269 1.269 24 H -0.257 1.257 25 C -0.167 4.167 26 C -0.072 4.072 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.420 0.580 37 H 0.431 0.569 38 H 0.129 0.871 39 H 0.111 0.889 40 H 0.285 0.715 41 H 0.146 0.854 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.894 3.600 3.383 31.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.015 4.015 4 C -0.164 4.164 5 C 0.000 4.000 6 N -0.342 5.342 7 C 0.301 3.699 8 O -0.412 6.412 9 C 0.281 3.719 10 O -0.407 6.407 11 N -0.267 5.267 12 C -0.036 4.036 13 C -0.094 4.094 14 C -0.242 4.242 15 C 0.069 3.931 16 O -0.145 6.145 17 C -0.478 4.478 18 H 0.097 0.903 19 C -0.189 4.189 20 N -0.563 5.563 21 Si 0.795 3.205 22 H -0.191 1.191 23 H -0.194 1.194 24 H -0.181 1.181 25 C -0.186 4.186 26 C -0.091 4.091 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.258 0.742 37 H 0.271 0.729 38 H 0.146 0.854 39 H 0.129 0.871 40 H 0.095 0.905 41 H 0.164 0.836 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -30.524 3.457 3.442 30.911 hybrid contribution 0.630 -0.213 -0.188 0.691 sum -29.894 3.244 3.254 30.245 Atomic orbital electron populations 1.22919 0.79358 1.03754 1.01002 1.87826 1.21560 1.28863 1.95675 1.22437 0.92653 0.84588 1.01810 1.21604 0.94363 0.95833 1.04630 1.21431 0.76941 0.97813 1.03836 1.45737 1.07754 1.09183 1.71555 1.19613 0.86839 0.85260 0.78186 1.90769 1.74424 1.26709 1.49259 1.20478 0.88699 0.84726 0.78035 1.90801 1.74686 1.27197 1.48007 1.42786 1.04005 1.10416 1.69454 1.17435 0.82128 0.99622 1.04444 1.20927 0.92635 0.98059 0.97749 1.21127 0.94643 1.01783 1.06642 1.19724 0.83224 0.94840 0.95349 1.83502 1.17126 1.50261 1.63564 1.20702 0.91801 1.05825 1.29430 0.90333 1.25323 0.96969 0.99189 0.97383 1.69737 1.12166 1.32954 1.41437 0.85177 0.77448 0.79349 0.78506 1.19121 1.19390 1.18144 1.20385 0.94373 0.98304 1.05559 1.20862 0.92157 0.99309 0.96819 0.93013 0.93042 0.88878 0.91768 0.91789 0.90112 0.90087 0.89966 0.89992 0.74233 0.72930 0.85358 0.87150 0.90543 0.83597 0.81128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.42 -5.78 10.70 -148.98 -1.59 -7.37 16 3 C 0.06 0.57 5.94 71.98 0.43 1.00 16 4 C -0.13 -1.19 5.70 30.59 0.17 -1.01 16 5 C 0.12 1.34 5.67 86.38 0.49 1.83 16 6 N -0.69 -10.82 5.55 -464.55 -2.58 -13.40 16 7 C 0.52 11.00 7.88 87.23 0.69 11.69 16 8 O -0.53 -12.60 16.48 -3.28 -0.05 -12.65 16 9 C 0.50 12.84 7.73 87.23 0.67 13.52 16 10 O -0.53 -16.72 13.91 -3.37 -0.05 -16.77 16 11 N -0.62 -15.27 5.32 -304.73 -1.62 -16.89 16 12 C 0.06 1.78 6.30 38.24 0.24 2.02 16 13 C -0.07 -2.83 8.69 22.39 0.19 -2.63 16 14 C -0.22 -10.08 9.16 22.37 0.20 -9.87 16 15 C 0.12 5.44 6.65 22.61 0.15 5.59 16 16 O -0.24 -12.67 8.58 -22.49 -0.19 -12.86 16 17 C -0.40 -23.63 9.94 67.92 0.68 -22.96 16 18 H 0.08 4.90 5.43 -2.91 -0.02 4.89 16 19 C 0.01 0.57 5.49 84.83 0.47 1.04 16 20 N -0.92 -55.22 13.96 21.61 0.30 -54.92 16 21 Si 0.97 44.86 28.62 68.60 1.96 46.82 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 25 C -0.17 -5.93 9.98 22.37 0.22 -5.70 16 26 C -0.07 -2.05 9.96 22.39 0.22 -1.82 16 27 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.05 0.30 8.14 -2.38 -0.02 0.28 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.42 6.12 7.94 -92.71 -0.74 5.38 16 37 H 0.43 8.15 8.30 -92.71 -0.77 7.39 16 38 H 0.13 4.87 6.22 -2.91 -0.02 4.86 16 39 H 0.11 5.55 5.63 -2.91 -0.02 5.54 16 40 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.15 4.54 8.06 -2.91 -0.02 4.52 16 42 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -72.86 365.77 1.83 -71.03 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.43 Total: 22.88 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 6.08 Total: -5.87 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -3.90 Total: -85.21 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -1.89 Total: -49.66 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.96 Total: 46.82 kcal Total: -72.86 1.83 -71.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048601726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.419 kcal (2) G-P(sol) polarization free energy of solvation -72.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds