Wall clock time and date at job start Fri Apr 10 2020 18:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47028 * 2 1 4 4 H 1.09002 * 109.47368 * 55.00410 * 3 2 1 5 5 C 1.53008 * 109.46860 * 175.00233 * 3 2 1 6 6 O 1.42896 * 109.47360 * 54.99529 * 5 3 2 7 7 N 1.46494 * 109.46782 * 294.99753 * 3 2 1 8 8 C 1.34779 * 119.99760 * 155.00338 * 7 3 2 9 9 O 1.21363 * 119.99803 * 359.97438 * 8 7 3 10 10 C 1.49356 * 120.00255 * 179.97438 * 8 7 3 11 11 O 1.21377 * 119.99854 * 0.02562 * 10 8 7 12 12 N 1.34769 * 120.00317 * 179.97438 * 10 8 7 13 13 C 1.39717 * 120.00356 * 174.78692 * 12 10 8 14 14 C 1.39026 * 120.04122 * 326.28632 * 13 12 10 15 15 C 1.38135 * 120.06033 * 180.02562 * 14 13 12 16 16 C 1.38182 * 120.14727 * 359.71300 * 15 14 13 17 17 C 1.38914 * 120.08070 * 0.56403 * 16 15 14 18 18 O 1.35759 * 120.03335 * 179.71476 * 17 16 15 19 19 C 1.34830 * 116.99906 * 173.81952 * 18 17 16 20 20 H 1.07996 * 120.00265 * 354.59877 * 19 18 17 21 21 C 1.38655 * 119.99479 * 174.60137 * 19 18 17 22 22 N 1.31550 * 120.00217 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99636 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47399 * 60.00022 * 23 21 19 25 25 H 1.48503 * 109.47015 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47178 * 299.99666 * 23 21 19 27 27 C 1.38762 * 119.93859 * 359.43847 * 17 16 15 28 28 H 1.09007 * 109.47038 * 300.00362 * 1 2 3 29 29 H 1.08999 * 109.47231 * 59.99894 * 1 2 3 30 30 H 1.08996 * 109.47075 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47376 * 239.99789 * 2 1 3 32 32 H 1.09008 * 109.47109 * 119.99861 * 2 1 3 33 33 H 1.08999 * 109.46981 * 175.00312 * 5 3 2 34 34 H 1.09007 * 109.46632 * 294.99673 * 5 3 2 35 35 H 0.96698 * 113.99818 * 180.02562 * 6 5 3 36 36 H 0.96998 * 120.00751 * 335.00320 * 7 3 2 37 37 H 0.97005 * 120.00135 * 354.78461 * 12 10 8 38 38 H 1.07997 * 119.96759 * 359.97438 * 14 13 12 39 39 H 1.07998 * 119.92853 * 180.02562 * 15 14 13 40 40 H 1.08003 * 119.95720 * 180.27631 * 16 15 14 41 41 H 0.97004 * 119.99970 * 180.02562 * 22 21 19 42 42 H 1.08000 * 120.07407 * 180.25585 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5649 1.4443 0.1257 6 8 4.1293 0.6404 -0.9121 7 7 1.6524 2.0974 -1.2518 8 6 1.5256 3.4384 -1.2996 9 8 1.7321 4.1032 -0.3055 10 6 1.1311 4.1062 -2.5760 11 8 0.9242 3.4412 -3.5701 12 7 1.0038 5.4470 -2.6237 13 6 0.7419 6.0811 -3.8408 14 6 1.2684 5.5675 -5.0206 15 6 1.0101 6.1944 -6.2241 16 6 0.2233 7.3298 -6.2604 17 6 -0.3011 7.8514 -5.0846 18 8 -1.0692 8.9702 -5.1207 19 6 -1.6513 9.3506 -3.9656 20 1 -1.5686 8.7265 -3.0880 21 6 -2.3563 10.5430 -3.9044 22 7 -2.4566 11.3034 -4.9731 23 14 -3.1622 11.0703 -2.3038 24 1 -2.1251 11.2123 -1.2505 25 1 -3.8495 12.3719 -2.5011 26 1 -4.1534 10.0459 -1.8877 27 6 -0.0439 7.2245 -3.8736 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9356 2.4655 0.0366 34 1 3.8499 1.0377 1.0961 35 1 5.0951 0.5956 -0.8936 36 1 1.4871 1.5661 -2.0463 37 1 1.0940 5.9719 -1.8129 38 1 1.8805 4.6781 -4.9960 39 1 1.4198 5.7934 -7.1394 40 1 0.0197 7.8149 -7.2036 41 1 -2.9495 12.1378 -4.9302 42 1 -0.4539 7.6258 -2.9586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048604676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:52 Heat of formation + Delta-G solvation = -119.806162 kcal Electronic energy + Delta-G solvation = -26487.537689 eV Core-core repulsion = 22433.707727 eV Total energy + Delta-G solvation = -4053.829962 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.99515 -39.56070 -38.56213 -37.63649 -36.54454 -35.63285 -34.34872 -32.55167 -32.26402 -29.60133 -29.17916 -28.66072 -25.58119 -25.06533 -23.84357 -21.97844 -21.84482 -20.93824 -20.16464 -18.84693 -18.04769 -17.88281 -17.28919 -16.74735 -16.15876 -15.86000 -15.48354 -15.16494 -14.93708 -14.71056 -14.45824 -14.25330 -14.11841 -13.86889 -13.72632 -13.53016 -13.03639 -12.96691 -12.71704 -12.40964 -11.91866 -11.81162 -11.75064 -11.61371 -11.44845 -11.26425 -11.06772 -11.00131 -10.79106 -10.46876 -10.42787 -9.96321 -9.60425 -9.50831 -9.44890 -8.82796 -7.82538 -7.23000 -6.46995 -4.06921 1.19542 2.07064 2.25940 2.37696 3.12492 3.12740 3.16177 3.19358 3.55946 3.85560 3.95131 4.24617 4.39701 4.54447 4.55304 4.74083 4.94093 5.05026 5.08083 5.19634 5.22933 5.28287 5.40827 5.58286 5.62434 5.72151 5.91042 5.91882 5.96853 6.02705 6.14180 6.18758 6.53625 6.72267 6.87051 6.98627 7.08807 7.19743 7.23257 7.36592 7.46180 7.66814 7.73044 7.96195 8.02436 8.98242 9.66910 10.70692 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002701 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.475648 B =10364.531736 C =11380.315959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.126 4.126 3 C 0.145 3.855 4 H 0.105 0.895 5 C 0.061 3.939 6 O -0.568 6.568 7 N -0.687 5.687 8 C 0.512 3.488 9 O -0.522 6.522 10 C 0.503 3.497 11 O -0.500 6.500 12 N -0.636 5.636 13 C 0.173 3.827 14 C -0.204 4.204 15 C -0.062 4.062 16 C -0.195 4.195 17 C 0.168 3.832 18 O -0.173 6.173 19 C -0.394 4.394 20 H 0.090 0.910 21 C 0.041 3.959 22 N -0.861 5.861 23 Si 0.940 3.060 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.250 4.250 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.380 0.620 36 H 0.416 0.584 37 H 0.418 0.582 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.271 0.729 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.375 -20.130 10.600 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.164 4.164 3 C 0.041 3.959 4 H 0.123 0.877 5 C -0.017 4.017 6 O -0.373 6.373 7 N -0.341 5.341 8 C 0.293 3.707 9 O -0.398 6.398 10 C 0.284 3.716 11 O -0.374 6.374 12 N -0.282 5.282 13 C 0.081 3.919 14 C -0.225 4.225 15 C -0.081 4.081 16 C -0.215 4.215 17 C 0.113 3.887 18 O -0.077 6.077 19 C -0.470 4.470 20 H 0.108 0.892 21 C -0.164 4.164 22 N -0.496 5.496 23 Si 0.764 3.236 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.271 4.271 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.227 0.773 36 H 0.253 0.747 37 H 0.255 0.745 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.578 -19.845 10.244 24.300 hybrid contribution 0.195 0.415 1.161 1.248 sum 9.774 -19.430 11.405 24.558 Atomic orbital electron populations 1.21830 0.95143 1.02074 1.02427 1.21718 0.96345 0.94416 1.03900 1.21286 0.92822 0.94397 0.87416 0.87723 1.22644 0.93770 0.94870 0.90466 1.86466 1.25501 1.72048 1.53323 1.45728 1.67795 1.06035 1.14529 1.20142 0.78411 0.83416 0.88774 1.90766 1.49157 1.64079 1.35818 1.20049 0.79366 0.83270 0.88909 1.90792 1.47008 1.63783 1.35792 1.43140 1.67732 1.06209 1.11114 1.17398 0.96846 0.93432 0.84260 1.20524 1.07084 1.03450 0.91431 1.20520 0.96684 0.94161 0.96766 1.20290 1.05125 0.99390 0.96709 1.19074 0.89686 0.87565 0.92362 1.84024 1.53729 1.34944 1.34960 1.21241 1.31351 1.05924 0.88472 0.89228 1.25276 0.97153 0.94899 0.99038 1.70023 1.38944 1.12419 1.28191 0.85798 0.79279 0.78358 0.80116 1.19459 1.20242 1.19490 1.20841 1.06667 1.00143 0.99478 0.92546 0.92307 0.92232 0.90175 0.90283 0.92846 0.92440 0.77310 0.74729 0.74451 0.86330 0.86407 0.86199 0.91906 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.80 37.16 0.36 -0.71 16 2 C -0.13 -0.82 5.19 -26.73 -0.14 -0.96 16 3 C 0.15 1.19 2.37 -67.93 -0.16 1.02 16 4 H 0.10 0.90 7.58 -51.93 -0.39 0.50 16 5 C 0.06 0.45 6.85 37.16 0.25 0.70 16 6 O -0.57 -4.15 12.83 -35.23 -0.45 -4.60 16 7 N -0.69 -7.07 4.47 -54.26 -0.24 -7.31 16 8 C 0.51 6.68 7.85 -11.63 -0.09 6.59 16 9 O -0.52 -7.54 16.15 5.49 0.09 -7.45 16 10 C 0.50 7.72 7.62 -11.63 -0.09 7.63 16 11 O -0.50 -8.55 14.18 5.47 0.08 -8.47 16 12 N -0.64 -10.29 5.32 -10.31 -0.05 -10.35 16 13 C 0.17 3.33 6.27 -83.77 -0.52 2.81 16 14 C -0.20 -3.84 8.65 -39.33 -0.34 -4.18 16 15 C -0.06 -1.15 10.03 -39.64 -0.40 -1.55 16 16 C -0.20 -4.12 9.99 -39.35 -0.39 -4.51 16 17 C 0.17 4.02 6.64 -39.14 -0.26 3.76 16 18 O -0.17 -4.89 9.76 0.02 0.00 -4.89 16 19 C -0.39 -10.88 9.44 30.89 0.29 -10.59 16 20 H 0.09 2.29 5.30 -52.49 -0.28 2.01 16 21 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 22 N -0.86 -25.05 13.67 55.48 0.76 -24.29 16 23 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 27 C -0.25 -5.41 9.05 -39.19 -0.35 -5.77 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.47 7.75 -51.93 -0.40 0.07 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.57 7.73 -51.93 -0.40 0.17 16 32 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.38 1.30 9.12 45.56 0.42 1.72 16 36 H 0.42 4.16 8.07 -40.82 -0.33 3.83 16 37 H 0.42 6.04 8.30 -40.82 -0.34 5.70 16 38 H 0.12 2.13 6.44 -52.49 -0.34 1.79 16 39 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 41 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.13 2.82 5.71 -52.49 -0.30 2.52 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -33.16 363.61 -5.76 -38.93 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -4.46 Total: 12.33 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.94 Total: -4.73 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.46 Total: -41.95 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.29 Total: -25.41 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.16 -5.76 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048604676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.877 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds