Wall clock time and date at job start Fri Apr 10 2020 18:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47028 * 2 1 4 4 H 1.09002 * 109.47368 * 55.00410 * 3 2 1 5 5 C 1.53008 * 109.46860 * 175.00233 * 3 2 1 6 6 O 1.42896 * 109.47360 * 54.99529 * 5 3 2 7 7 N 1.46494 * 109.46782 * 294.99753 * 3 2 1 8 8 C 1.34779 * 119.99760 * 155.00338 * 7 3 2 9 9 O 1.21363 * 119.99803 * 359.97438 * 8 7 3 10 10 C 1.49356 * 120.00255 * 179.97438 * 8 7 3 11 11 O 1.21377 * 119.99854 * 0.02562 * 10 8 7 12 12 N 1.34769 * 120.00317 * 179.97438 * 10 8 7 13 13 C 1.39717 * 120.00356 * 174.78692 * 12 10 8 14 14 C 1.39026 * 120.04122 * 326.28632 * 13 12 10 15 15 C 1.38135 * 120.06033 * 180.02562 * 14 13 12 16 16 C 1.38182 * 120.14727 * 359.71300 * 15 14 13 17 17 C 1.38914 * 120.08070 * 0.56403 * 16 15 14 18 18 O 1.35759 * 120.03335 * 179.71476 * 17 16 15 19 19 C 1.34830 * 116.99906 * 173.81952 * 18 17 16 20 20 H 1.07996 * 120.00265 * 354.59877 * 19 18 17 21 21 C 1.38655 * 119.99479 * 174.60137 * 19 18 17 22 22 N 1.31550 * 120.00217 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99636 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47399 * 60.00022 * 23 21 19 25 25 H 1.48503 * 109.47015 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47178 * 299.99666 * 23 21 19 27 27 C 1.38762 * 119.93859 * 359.43847 * 17 16 15 28 28 H 1.09007 * 109.47038 * 300.00362 * 1 2 3 29 29 H 1.08999 * 109.47231 * 59.99894 * 1 2 3 30 30 H 1.08996 * 109.47075 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47376 * 239.99789 * 2 1 3 32 32 H 1.09008 * 109.47109 * 119.99861 * 2 1 3 33 33 H 1.08999 * 109.46981 * 175.00312 * 5 3 2 34 34 H 1.09007 * 109.46632 * 294.99673 * 5 3 2 35 35 H 0.96698 * 113.99818 * 180.02562 * 6 5 3 36 36 H 0.96998 * 120.00751 * 335.00320 * 7 3 2 37 37 H 0.97005 * 120.00135 * 354.78461 * 12 10 8 38 38 H 1.07997 * 119.96759 * 359.97438 * 14 13 12 39 39 H 1.07998 * 119.92853 * 180.02562 * 15 14 13 40 40 H 1.08003 * 119.95720 * 180.27631 * 16 15 14 41 41 H 0.97004 * 119.99970 * 180.02562 * 22 21 19 42 42 H 1.08000 * 120.07407 * 180.25585 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5649 1.4443 0.1257 6 8 4.1293 0.6404 -0.9121 7 7 1.6524 2.0974 -1.2518 8 6 1.5256 3.4384 -1.2996 9 8 1.7321 4.1032 -0.3055 10 6 1.1311 4.1062 -2.5760 11 8 0.9242 3.4412 -3.5701 12 7 1.0038 5.4470 -2.6237 13 6 0.7419 6.0811 -3.8408 14 6 1.2684 5.5675 -5.0206 15 6 1.0101 6.1944 -6.2241 16 6 0.2233 7.3298 -6.2604 17 6 -0.3011 7.8514 -5.0846 18 8 -1.0692 8.9702 -5.1207 19 6 -1.6513 9.3506 -3.9656 20 1 -1.5686 8.7265 -3.0880 21 6 -2.3563 10.5430 -3.9044 22 7 -2.4566 11.3034 -4.9731 23 14 -3.1622 11.0703 -2.3038 24 1 -2.1251 11.2123 -1.2505 25 1 -3.8495 12.3719 -2.5011 26 1 -4.1534 10.0459 -1.8877 27 6 -0.0439 7.2245 -3.8736 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9356 2.4655 0.0366 34 1 3.8499 1.0377 1.0961 35 1 5.0951 0.5956 -0.8936 36 1 1.4871 1.5661 -2.0463 37 1 1.0940 5.9719 -1.8129 38 1 1.8805 4.6781 -4.9960 39 1 1.4198 5.7934 -7.1394 40 1 0.0197 7.8149 -7.2036 41 1 -2.9495 12.1378 -4.9302 42 1 -0.4539 7.6258 -2.9586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048604676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:51 Heat of formation + Delta-G solvation = -146.219211 kcal Electronic energy + Delta-G solvation = -26488.683045 eV Core-core repulsion = 22433.707727 eV Total energy + Delta-G solvation = -4054.975318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.20210 -40.92344 -40.02081 -38.41965 -38.19055 -36.39603 -35.70849 -34.24859 -33.32469 -31.16159 -30.44241 -29.74480 -27.41320 -26.35544 -24.50260 -23.57469 -23.18567 -21.75499 -21.46390 -20.16926 -19.69987 -18.94590 -18.55050 -17.78760 -17.23968 -17.02486 -16.93353 -16.72201 -16.10285 -15.94762 -15.75245 -15.51188 -15.40196 -15.05931 -14.78524 -14.67832 -14.56813 -14.19145 -13.60317 -13.56977 -13.36994 -13.27315 -13.09027 -12.72840 -12.56524 -12.42187 -12.38805 -12.14542 -12.02475 -11.81045 -11.53636 -11.35196 -10.99477 -10.80405 -10.69239 -10.34402 -9.44319 -8.95638 -8.47655 -6.16487 -0.06766 0.57933 0.69605 1.15172 1.35732 1.45917 1.51345 1.99473 2.17264 2.46447 2.80224 3.13489 3.25275 3.36371 3.46501 3.69586 3.97437 4.07250 4.20707 4.27396 4.38230 4.44453 4.48933 4.56641 4.58065 4.60769 4.72157 4.85915 4.98467 5.00874 5.08730 5.13600 5.22889 5.29895 5.33208 5.39407 5.59868 5.63217 5.85401 5.99737 6.11371 6.23594 6.58853 6.78091 6.86544 6.96680 7.74734 8.74805 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002701 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.475648 B =10364.531736 C =11380.315959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 C 0.137 3.863 4 H 0.103 0.897 5 C 0.065 3.935 6 O -0.582 6.582 7 N -0.672 5.672 8 C 0.519 3.481 9 O -0.538 6.538 10 C 0.505 3.495 11 O -0.516 6.516 12 N -0.635 5.635 13 C 0.178 3.822 14 C -0.195 4.195 15 C -0.048 4.048 16 C -0.206 4.206 17 C 0.135 3.865 18 O -0.223 6.223 19 C -0.415 4.415 20 H 0.100 0.900 21 C -0.019 4.019 22 N -0.917 5.917 23 Si 1.015 2.985 24 H -0.256 1.256 25 H -0.271 1.271 26 H -0.259 1.259 27 C -0.256 4.256 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.037 0.963 34 H 0.084 0.916 35 H 0.396 0.604 36 H 0.418 0.582 37 H 0.426 0.574 38 H 0.136 0.864 39 H 0.161 0.839 40 H 0.124 0.876 41 H 0.274 0.726 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.604 -22.812 12.260 28.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.154 4.154 3 C 0.034 3.966 4 H 0.120 0.880 5 C -0.014 4.014 6 O -0.390 6.390 7 N -0.325 5.325 8 C 0.298 3.702 9 O -0.415 6.415 10 C 0.288 3.712 11 O -0.391 6.391 12 N -0.282 5.282 13 C 0.084 3.916 14 C -0.215 4.215 15 C -0.066 4.066 16 C -0.226 4.226 17 C 0.083 3.917 18 O -0.129 6.129 19 C -0.491 4.491 20 H 0.118 0.882 21 C -0.217 4.217 22 N -0.555 5.555 23 Si 0.835 3.165 24 H -0.180 1.180 25 H -0.196 1.196 26 H -0.184 1.184 27 C -0.277 4.277 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.246 0.754 36 H 0.256 0.744 37 H 0.265 0.735 38 H 0.153 0.847 39 H 0.178 0.822 40 H 0.142 0.858 41 H 0.083 0.917 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.862 -22.611 11.922 27.774 hybrid contribution 0.016 0.922 0.582 1.090 sum 10.878 -21.690 12.504 27.297 Atomic orbital electron populations 1.21838 0.95481 1.02541 1.01679 1.21676 0.95911 0.93170 1.04681 1.21568 0.93873 0.95109 0.86039 0.87955 1.22578 0.92765 0.94267 0.91752 1.86421 1.27225 1.71843 1.53492 1.45791 1.66200 1.04946 1.15552 1.19658 0.78855 0.84188 0.87455 1.90771 1.50387 1.64536 1.35827 1.20491 0.78346 0.82699 0.89694 1.90775 1.47567 1.64026 1.36708 1.43121 1.67774 1.06794 1.10466 1.17436 0.95736 0.92622 0.85817 1.20880 1.05961 1.03379 0.91295 1.20950 0.94813 0.92459 0.98402 1.20558 1.05564 1.00360 0.96090 1.19603 0.90463 0.87308 0.94310 1.83987 1.56051 1.37205 1.35650 1.21729 1.31899 1.06602 0.88867 0.88238 1.26536 0.97563 0.94582 1.03007 1.70165 1.41058 1.13319 1.30924 0.84694 0.78455 0.78091 0.75298 1.18036 1.19586 1.18383 1.20849 1.07238 1.00992 0.98649 0.92554 0.93776 0.91215 0.90509 0.88270 0.94507 0.89832 0.75371 0.74434 0.73497 0.84663 0.82196 0.85828 0.91740 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.80 71.98 0.71 -1.14 16 2 C -0.12 -1.21 5.19 30.60 0.16 -1.05 16 3 C 0.14 1.94 2.37 45.00 0.11 2.05 16 4 H 0.10 1.54 7.58 -2.39 -0.02 1.52 16 5 C 0.07 0.78 6.85 71.98 0.49 1.28 16 6 O -0.58 -6.98 12.83 -148.98 -1.91 -8.89 16 7 N -0.67 -12.61 4.47 -443.94 -1.98 -14.60 16 8 C 0.52 12.73 7.85 87.24 0.68 13.41 16 9 O -0.54 -14.78 16.15 -3.29 -0.05 -14.83 16 10 C 0.51 14.70 7.62 87.24 0.66 15.37 16 11 O -0.52 -16.63 14.18 -3.33 -0.05 -16.68 16 12 N -0.64 -19.79 5.32 -304.89 -1.62 -21.42 16 13 C 0.18 6.66 6.27 38.20 0.24 6.90 16 14 C -0.19 -6.87 8.65 22.43 0.19 -6.68 16 15 C -0.05 -1.65 10.03 22.23 0.22 -1.43 16 16 C -0.21 -8.68 9.99 22.42 0.22 -8.46 16 17 C 0.13 6.66 6.64 22.56 0.15 6.81 16 18 O -0.22 -13.22 9.76 -22.84 -0.22 -13.45 16 19 C -0.42 -23.89 9.44 67.92 0.64 -23.25 16 20 H 0.10 5.26 5.30 -2.91 -0.02 5.24 16 21 C -0.02 -1.05 5.49 84.83 0.47 -0.59 16 22 N -0.92 -55.73 13.67 21.61 0.30 -55.43 16 23 Si 1.02 42.52 29.55 68.60 2.03 44.54 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 27 C -0.26 -11.24 9.05 22.52 0.20 -11.03 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.04 0.64 7.75 -2.39 -0.02 0.62 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.89 7.73 -2.39 -0.02 0.88 16 32 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.40 1.69 9.12 -74.06 -0.68 1.02 16 36 H 0.42 7.58 8.07 -92.71 -0.75 6.84 16 37 H 0.43 11.94 8.30 -92.70 -0.77 11.18 16 38 H 0.14 4.41 6.44 -2.91 -0.02 4.40 16 39 H 0.16 4.17 8.06 -2.91 -0.02 4.14 16 40 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 41 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 42 H 0.13 5.60 5.71 -2.91 -0.02 5.59 16 Total: -1.00 -74.27 363.61 0.54 -73.73 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -1.09 Total: 34.84 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 5.15 Total: -7.82 kcal Atomic # 7 Polarization: -88.14 SS G_CDS: -3.31 Total: -91.45 kcal Atomic # 8 Polarization: -51.61 SS G_CDS: -2.23 Total: -53.84 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -74.27 0.54 -73.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048604676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.491 kcal (2) G-P(sol) polarization free energy of solvation -74.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds