Wall clock time and date at job start Fri Apr 10 2020 18:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47522 * 2 1 4 4 H 1.09003 * 109.47214 * 54.99691 * 3 2 1 5 5 C 1.52998 * 109.47508 * 174.99764 * 3 2 1 6 6 O 1.42897 * 109.46926 * 54.99975 * 5 3 2 7 7 N 1.46499 * 109.46933 * 295.00426 * 3 2 1 8 8 C 1.34776 * 120.00340 * 155.00196 * 7 3 2 9 9 O 1.21366 * 119.99793 * 359.97438 * 8 7 3 10 10 C 1.49324 * 120.00209 * 179.97438 * 8 7 3 11 11 O 1.21386 * 119.99600 * 359.97438 * 10 8 7 12 12 N 1.34773 * 119.99836 * 179.97438 * 10 8 7 13 13 C 1.39742 * 119.99845 * 175.49193 * 12 10 8 14 14 C 1.38990 * 120.01258 * 214.86650 * 13 12 10 15 15 C 1.37961 * 119.99586 * 179.74646 * 14 13 12 16 16 C 1.38939 * 120.00473 * 0.51104 * 15 14 13 17 17 O 1.35764 * 119.99156 * 179.74646 * 16 15 14 18 18 C 1.34802 * 116.99807 * 185.36811 * 17 16 15 19 19 H 1.08001 * 120.00182 * 354.96601 * 18 17 16 20 20 C 1.38658 * 119.99823 * 174.96122 * 18 17 16 21 21 N 1.31560 * 119.99843 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00144 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.46915 * 89.99823 * 22 20 18 24 24 H 1.48497 * 109.46852 * 210.00190 * 22 20 18 25 25 H 1.48498 * 109.46812 * 329.99843 * 22 20 18 26 26 C 1.38929 * 120.01514 * 359.76728 * 16 15 14 27 27 C 1.37963 * 120.00686 * 359.97438 * 26 16 15 28 28 H 1.09004 * 109.46925 * 300.00437 * 1 2 3 29 29 H 1.09000 * 109.47425 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 59.99985 * 1 2 3 31 31 H 1.09001 * 109.46832 * 120.00015 * 2 1 3 32 32 H 1.08994 * 109.47654 * 239.99781 * 2 1 3 33 33 H 1.09001 * 109.47140 * 174.99941 * 5 3 2 34 34 H 1.09000 * 109.46813 * 295.00104 * 5 3 2 35 35 H 0.96699 * 114.00030 * 180.02562 * 6 5 3 36 36 H 0.97005 * 119.99768 * 334.98740 * 7 3 2 37 37 H 0.96996 * 120.00244 * 355.50125 * 12 10 8 38 38 H 1.08007 * 120.00100 * 0.02562 * 14 13 12 39 39 H 1.08006 * 120.00180 * 180.25527 * 15 14 13 40 40 H 0.96996 * 119.99908 * 179.97438 * 21 20 18 41 41 H 1.08003 * 119.99612 * 179.97438 * 26 16 15 42 42 H 1.08009 * 120.00440 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5649 1.4443 0.1258 6 8 4.1293 0.6403 -0.9120 7 7 1.6525 2.0974 -1.2518 8 6 1.5257 3.4384 -1.2996 9 8 1.7323 4.1032 -0.3055 10 6 1.1312 4.1060 -2.5757 11 8 0.9251 3.4410 -3.5700 12 7 1.0040 5.4469 -2.6233 13 6 0.7273 6.0797 -3.8381 14 6 1.2693 7.3304 -4.1097 15 6 1.0002 7.9526 -5.3113 16 6 0.1789 7.3337 -6.2455 17 8 -0.0899 7.9485 -7.4258 18 6 -0.9804 7.3475 -8.2400 19 1 -1.3828 6.3797 -7.9796 20 6 -1.3798 7.9719 -9.4118 21 7 -2.2485 7.3851 -10.2067 22 14 -0.6834 9.6456 -9.8626 23 1 0.5496 9.4673 -10.6706 24 1 -1.6875 10.4031 -10.6520 25 1 -0.3589 10.3967 -8.6234 26 6 -0.3677 6.0861 -5.9720 27 6 -0.0947 5.4611 -4.7728 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.9356 2.4654 0.0366 34 1 3.8498 1.0376 1.0961 35 1 5.0951 0.5955 -0.8936 36 1 1.4872 1.5660 -2.0463 37 1 1.1046 5.9726 -1.8145 38 1 1.9048 7.8132 -3.3819 39 1 1.4247 8.9227 -5.5241 40 1 -2.5282 7.8220 -11.0263 41 1 -1.0065 5.6055 -6.6983 42 1 -0.5200 4.4913 -4.5601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048604750.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:56 Heat of formation + Delta-G solvation = -116.558754 kcal Electronic energy + Delta-G solvation = -26276.249835 eV Core-core repulsion = 22222.560691 eV Total energy + Delta-G solvation = -4053.689144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.99010 -39.60652 -38.70658 -37.65454 -36.74763 -35.63659 -34.13680 -32.55738 -32.35645 -30.36401 -29.26531 -28.47806 -25.65273 -24.70249 -23.77899 -22.53117 -21.50693 -20.92312 -20.23815 -18.88964 -17.94052 -17.82185 -17.39986 -17.03417 -16.35819 -16.04922 -15.89027 -15.10986 -14.76837 -14.56731 -14.34023 -14.10004 -14.02885 -13.86658 -13.80997 -13.63761 -12.98341 -12.84246 -12.72726 -12.48459 -12.31904 -11.94494 -11.83007 -11.74617 -11.55221 -11.42944 -11.24015 -10.98918 -10.76521 -10.43686 -10.26188 -9.82307 -9.62953 -9.51589 -9.28756 -8.81265 -8.34967 -7.14554 -6.44217 -4.09943 1.21880 2.03685 2.09239 2.31704 3.16314 3.22447 3.24480 3.38376 3.56347 3.84867 4.21388 4.23701 4.37190 4.47159 4.54173 4.73030 4.79924 4.92594 5.03686 5.07803 5.17973 5.26538 5.39281 5.50826 5.57283 5.58159 5.71644 5.90592 5.96854 6.01165 6.03017 6.14218 6.49124 6.65707 6.77090 6.94130 7.00421 7.19647 7.23663 7.37732 7.53295 7.66417 7.76095 7.97352 8.05806 8.90338 9.51343 10.63115 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.026430 B = 0.002274 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.161590 B =12311.472216 C =12749.588873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.127 4.127 3 C 0.145 3.855 4 H 0.104 0.896 5 C 0.062 3.938 6 O -0.568 6.568 7 N -0.687 5.687 8 C 0.513 3.487 9 O -0.527 6.527 10 C 0.496 3.504 11 O -0.505 6.505 12 N -0.626 5.626 13 C 0.032 3.968 14 C -0.088 4.088 15 C -0.177 4.177 16 C 0.155 3.845 17 O -0.213 6.213 18 C -0.390 4.390 19 H 0.108 0.892 20 C 0.064 3.936 21 N -0.877 5.877 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.208 4.208 27 C -0.063 4.063 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.380 0.620 36 H 0.416 0.584 37 H 0.414 0.586 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.280 0.720 41 H 0.138 0.862 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.665 -11.527 22.031 26.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.164 4.164 3 C 0.041 3.959 4 H 0.122 0.878 5 C -0.017 4.017 6 O -0.373 6.373 7 N -0.341 5.341 8 C 0.294 3.706 9 O -0.404 6.404 10 C 0.277 3.723 11 O -0.380 6.380 12 N -0.272 5.272 13 C -0.060 4.060 14 C -0.108 4.108 15 C -0.197 4.197 16 C 0.102 3.898 17 O -0.118 6.118 18 C -0.465 4.465 19 H 0.125 0.875 20 C -0.140 4.140 21 N -0.514 5.514 22 Si 0.732 3.268 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.228 4.228 27 C -0.082 4.082 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.227 0.773 36 H 0.253 0.747 37 H 0.251 0.749 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.090 0.910 41 H 0.156 0.844 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.991 -11.408 21.578 26.011 hybrid contribution 0.771 0.662 -0.116 1.023 sum 9.763 -10.747 21.462 25.911 Atomic orbital electron populations 1.21828 0.95142 1.02107 1.02361 1.21720 0.96349 0.94429 1.03939 1.21276 0.92820 0.94401 0.87402 0.87777 1.22637 0.93791 0.94841 0.90471 1.86474 1.25524 1.72019 1.53281 1.45750 1.67656 1.06122 1.14534 1.20171 0.78302 0.83375 0.88767 1.90746 1.49541 1.64126 1.35959 1.20034 0.79940 0.83535 0.88757 1.90793 1.47848 1.63787 1.35572 1.42845 1.67525 1.06074 1.10768 1.17303 1.05089 0.95510 0.88098 1.20379 0.99410 0.94262 0.96726 1.19993 1.04812 1.01561 0.93348 1.19181 0.93559 0.91204 0.85815 1.83559 1.55976 1.47971 1.24271 1.20798 1.19699 1.04675 1.01334 0.87479 1.24486 0.95351 0.99423 0.94748 1.69648 1.30117 1.39065 1.12578 0.86167 0.78767 0.82605 0.79293 1.19842 1.20784 1.18301 1.21213 1.06296 0.96498 0.98756 1.20903 0.94995 0.99402 0.92940 0.92599 0.92212 0.92295 0.90294 0.90134 0.92902 0.92478 0.77286 0.74661 0.74940 0.86269 0.85852 0.90970 0.84406 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.80 37.16 0.36 -0.66 16 2 C -0.13 -0.80 5.19 -26.73 -0.14 -0.94 16 3 C 0.15 1.14 2.37 -67.93 -0.16 0.98 16 4 H 0.10 0.83 7.58 -51.93 -0.39 0.44 16 5 C 0.06 0.43 6.85 37.16 0.25 0.69 16 6 O -0.57 -4.19 12.83 -35.23 -0.45 -4.64 16 7 N -0.69 -6.86 4.47 -54.28 -0.24 -7.10 16 8 C 0.51 6.31 7.85 -11.65 -0.09 6.22 16 9 O -0.53 -7.03 16.14 5.48 0.09 -6.94 16 10 C 0.50 7.20 7.73 -11.65 -0.09 7.11 16 11 O -0.50 -8.58 13.91 5.47 0.08 -8.51 16 12 N -0.63 -8.93 5.32 -10.27 -0.05 -8.98 16 13 C 0.03 0.56 6.30 -83.69 -0.53 0.03 16 14 C -0.09 -1.44 9.96 -39.40 -0.39 -1.84 16 15 C -0.18 -3.39 9.98 -39.42 -0.39 -3.79 16 16 C 0.16 3.54 6.65 -39.07 -0.26 3.28 16 17 O -0.21 -5.54 8.58 0.09 0.00 -5.54 16 18 C -0.39 -10.90 9.94 30.89 0.31 -10.59 16 19 H 0.11 3.07 5.43 -52.49 -0.28 2.78 16 20 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 21 N -0.88 -25.20 13.96 55.48 0.77 -24.42 16 22 Si 0.91 21.44 28.62 -169.99 -4.86 16.58 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 26 C -0.21 -4.56 9.16 -39.43 -0.36 -4.92 16 27 C -0.06 -1.22 8.68 -39.40 -0.34 -1.56 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.45 7.75 -51.93 -0.40 0.05 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.58 7.73 -51.93 -0.40 0.18 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.38 1.34 9.12 45.56 0.42 1.75 16 36 H 0.42 4.16 8.07 -40.82 -0.33 3.83 16 37 H 0.41 4.90 8.30 -40.82 -0.34 4.56 16 38 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 39 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 40 H 0.28 7.42 8.31 -40.82 -0.34 7.09 16 41 H 0.14 3.18 5.63 -52.48 -0.30 2.88 16 42 H 0.13 2.44 6.23 -52.48 -0.33 2.11 16 LS Contribution 362.06 15.07 5.46 5.46 Total: -1.00 -32.30 362.06 -5.60 -37.90 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -4.45 Total: 10.52 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -1.93 Total: -4.32 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.48 Total: -40.50 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.29 Total: -25.63 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.86 Total: 16.58 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.30 -5.60 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048604750.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.661 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds