Wall clock time and date at job start Fri Apr 10 2020 18:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47522 * 2 1 4 4 H 1.09003 * 109.47214 * 54.99691 * 3 2 1 5 5 C 1.52998 * 109.47508 * 174.99764 * 3 2 1 6 6 O 1.42897 * 109.46926 * 54.99975 * 5 3 2 7 7 N 1.46499 * 109.46933 * 295.00426 * 3 2 1 8 8 C 1.34776 * 120.00340 * 155.00196 * 7 3 2 9 9 O 1.21366 * 119.99793 * 359.97438 * 8 7 3 10 10 C 1.49324 * 120.00209 * 179.97438 * 8 7 3 11 11 O 1.21386 * 119.99600 * 359.97438 * 10 8 7 12 12 N 1.34773 * 119.99836 * 179.97438 * 10 8 7 13 13 C 1.39742 * 119.99845 * 175.49193 * 12 10 8 14 14 C 1.38990 * 120.01258 * 214.86650 * 13 12 10 15 15 C 1.37961 * 119.99586 * 179.74646 * 14 13 12 16 16 C 1.38939 * 120.00473 * 0.51104 * 15 14 13 17 17 O 1.35764 * 119.99156 * 179.74646 * 16 15 14 18 18 C 1.34802 * 116.99807 * 185.36811 * 17 16 15 19 19 H 1.08001 * 120.00182 * 354.96601 * 18 17 16 20 20 C 1.38658 * 119.99823 * 174.96122 * 18 17 16 21 21 N 1.31560 * 119.99843 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00144 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.46915 * 89.99823 * 22 20 18 24 24 H 1.48497 * 109.46852 * 210.00190 * 22 20 18 25 25 H 1.48498 * 109.46812 * 329.99843 * 22 20 18 26 26 C 1.38929 * 120.01514 * 359.76728 * 16 15 14 27 27 C 1.37963 * 120.00686 * 359.97438 * 26 16 15 28 28 H 1.09004 * 109.46925 * 300.00437 * 1 2 3 29 29 H 1.09000 * 109.47425 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 59.99985 * 1 2 3 31 31 H 1.09001 * 109.46832 * 120.00015 * 2 1 3 32 32 H 1.08994 * 109.47654 * 239.99781 * 2 1 3 33 33 H 1.09001 * 109.47140 * 174.99941 * 5 3 2 34 34 H 1.09000 * 109.46813 * 295.00104 * 5 3 2 35 35 H 0.96699 * 114.00030 * 180.02562 * 6 5 3 36 36 H 0.97005 * 119.99768 * 334.98740 * 7 3 2 37 37 H 0.96996 * 120.00244 * 355.50125 * 12 10 8 38 38 H 1.08007 * 120.00100 * 0.02562 * 14 13 12 39 39 H 1.08006 * 120.00180 * 180.25527 * 15 14 13 40 40 H 0.96996 * 119.99908 * 179.97438 * 21 20 18 41 41 H 1.08003 * 119.99612 * 179.97438 * 26 16 15 42 42 H 1.08009 * 120.00440 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5649 1.4443 0.1258 6 8 4.1293 0.6403 -0.9120 7 7 1.6525 2.0974 -1.2518 8 6 1.5257 3.4384 -1.2996 9 8 1.7323 4.1032 -0.3055 10 6 1.1312 4.1060 -2.5757 11 8 0.9251 3.4410 -3.5700 12 7 1.0040 5.4469 -2.6233 13 6 0.7273 6.0797 -3.8381 14 6 1.2693 7.3304 -4.1097 15 6 1.0002 7.9526 -5.3113 16 6 0.1789 7.3337 -6.2455 17 8 -0.0899 7.9485 -7.4258 18 6 -0.9804 7.3475 -8.2400 19 1 -1.3828 6.3797 -7.9796 20 6 -1.3798 7.9719 -9.4118 21 7 -2.2485 7.3851 -10.2067 22 14 -0.6834 9.6456 -9.8626 23 1 0.5496 9.4673 -10.6706 24 1 -1.6875 10.4031 -10.6520 25 1 -0.3589 10.3967 -8.6234 26 6 -0.3677 6.0861 -5.9720 27 6 -0.0947 5.4611 -4.7728 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.9356 2.4654 0.0366 34 1 3.8498 1.0376 1.0961 35 1 5.0951 0.5955 -0.8936 36 1 1.4872 1.5660 -2.0463 37 1 1.1046 5.9726 -1.8145 38 1 1.9048 7.8132 -3.3819 39 1 1.4247 8.9227 -5.5241 40 1 -2.5282 7.8220 -11.0263 41 1 -1.0065 5.6055 -6.6983 42 1 -0.5200 4.4913 -4.5601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048604750.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:55 Heat of formation + Delta-G solvation = -142.398466 kcal Electronic energy + Delta-G solvation = -26277.370329 eV Core-core repulsion = 22222.560691 eV Total energy + Delta-G solvation = -4054.809638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.14348 -40.97069 -40.08375 -38.41932 -38.29180 -36.34783 -35.49260 -34.38337 -33.30203 -31.95156 -30.24311 -29.66423 -27.39107 -25.99005 -24.48170 -24.02006 -22.86324 -21.73579 -21.41293 -20.26938 -19.52207 -19.08065 -18.60074 -18.22530 -17.44714 -17.16937 -16.82160 -16.50180 -15.92219 -15.74114 -15.61042 -15.58216 -15.39733 -15.05191 -14.75035 -14.65074 -14.48111 -14.23021 -14.09292 -13.58913 -13.49006 -13.34484 -13.26614 -12.80563 -12.73880 -12.48319 -12.38491 -12.03381 -11.99380 -11.80538 -11.53553 -11.18886 -10.97652 -10.77047 -10.65019 -10.31690 -9.91102 -8.77737 -8.49849 -6.22362 0.02528 0.47216 0.64908 1.22258 1.33731 1.38435 1.54038 2.04245 2.29078 2.53640 2.73606 2.99860 3.14183 3.30957 3.37513 3.70605 3.98146 4.03245 4.05063 4.20745 4.41421 4.45155 4.49340 4.54312 4.59520 4.60748 4.72416 4.85587 4.96427 5.02001 5.14039 5.14535 5.27480 5.31814 5.37422 5.39369 5.53201 5.71984 5.83019 5.91425 6.13863 6.28531 6.66990 6.83572 6.85176 6.87799 7.55167 8.61696 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.026430 B = 0.002274 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.161590 B =12311.472216 C =12749.588873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C 0.138 3.862 4 H 0.106 0.894 5 C 0.064 3.936 6 O -0.584 6.584 7 N -0.677 5.677 8 C 0.521 3.479 9 O -0.536 6.536 10 C 0.497 3.503 11 O -0.531 6.531 12 N -0.619 5.619 13 C 0.057 3.943 14 C -0.072 4.072 15 C -0.167 4.167 16 C 0.119 3.881 17 O -0.237 6.237 18 C -0.401 4.401 19 H 0.079 0.921 20 C 0.009 3.991 21 N -0.923 5.923 22 Si 0.974 3.026 23 H -0.266 1.266 24 H -0.269 1.269 25 H -0.257 1.257 26 C -0.222 4.222 27 C -0.074 4.074 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.396 0.604 36 H 0.416 0.584 37 H 0.431 0.569 38 H 0.171 0.829 39 H 0.147 0.853 40 H 0.285 0.715 41 H 0.111 0.889 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.973 -11.034 25.242 30.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C 0.035 3.965 4 H 0.124 0.876 5 C -0.014 4.014 6 O -0.392 6.392 7 N -0.329 5.329 8 C 0.300 3.700 9 O -0.413 6.413 10 C 0.279 3.721 11 O -0.408 6.408 12 N -0.267 5.267 13 C -0.036 4.036 14 C -0.092 4.092 15 C -0.186 4.186 16 C 0.069 3.931 17 O -0.144 6.144 18 C -0.477 4.477 19 H 0.096 0.904 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.796 3.204 23 H -0.191 1.191 24 H -0.194 1.194 25 H -0.181 1.181 26 C -0.242 4.242 27 C -0.094 4.094 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.246 0.754 36 H 0.253 0.747 37 H 0.270 0.730 38 H 0.189 0.811 39 H 0.165 0.835 40 H 0.095 0.905 41 H 0.128 0.872 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.336 -10.954 24.867 29.443 hybrid contribution 0.167 0.259 -0.752 0.812 sum 11.503 -10.695 24.116 28.780 Atomic orbital electron populations 1.21831 0.95414 1.02485 1.01736 1.21679 0.95989 0.93408 1.04522 1.21555 0.93814 0.94993 0.86119 0.87593 1.22605 0.92839 0.94316 0.91679 1.86435 1.27209 1.71944 1.53631 1.45844 1.66291 1.05285 1.15466 1.19658 0.78753 0.84022 0.87521 1.90751 1.50455 1.64399 1.35720 1.20537 0.78794 0.83399 0.89350 1.90797 1.48722 1.64395 1.36850 1.42784 1.67287 1.06286 1.10301 1.17440 1.02512 0.95434 0.88228 1.20854 0.98488 0.93382 0.96429 1.20388 1.02953 1.02264 0.93000 1.19712 0.95350 0.91878 0.86146 1.83504 1.56811 1.48485 1.25605 1.20703 1.20553 1.04118 1.02358 0.90364 1.25340 0.95758 1.03319 0.94530 1.69739 1.32107 1.41025 1.13511 0.85167 0.78394 0.77859 0.79009 1.19086 1.19362 1.18119 1.21121 1.06683 0.96928 0.99432 1.20918 0.96031 0.99632 0.92828 0.92255 0.91408 0.93847 0.88252 0.90902 0.94305 0.89798 0.75410 0.74695 0.72963 0.81132 0.83533 0.90519 0.87162 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.80 71.98 0.71 -1.09 16 2 C -0.12 -1.23 5.19 30.59 0.16 -1.07 16 3 C 0.14 1.85 2.37 44.99 0.11 1.96 16 4 H 0.11 1.42 7.58 -2.39 -0.02 1.41 16 5 C 0.06 0.74 6.85 71.98 0.49 1.23 16 6 O -0.58 -7.30 12.83 -148.98 -1.91 -9.21 16 7 N -0.68 -12.41 4.47 -444.00 -1.98 -14.39 16 8 C 0.52 11.77 7.85 87.23 0.68 12.46 16 9 O -0.54 -12.91 16.14 -3.30 -0.05 -12.96 16 10 C 0.50 13.55 7.73 87.23 0.67 14.22 16 11 O -0.53 -17.70 13.91 -3.36 -0.05 -17.74 16 12 N -0.62 -15.87 5.32 -304.75 -1.62 -17.50 16 13 C 0.06 1.83 6.30 38.24 0.24 2.07 16 14 C -0.07 -2.09 9.96 22.38 0.22 -1.86 16 15 C -0.17 -5.99 9.98 22.37 0.22 -5.77 16 16 C 0.12 5.51 6.65 22.60 0.15 5.66 16 17 O -0.24 -12.71 8.58 -22.61 -0.19 -12.91 16 18 C -0.40 -23.75 9.94 67.92 0.68 -23.07 16 19 H 0.08 4.91 5.43 -2.91 -0.02 4.90 16 20 C 0.01 0.52 5.49 84.83 0.47 0.99 16 21 N -0.92 -55.56 13.96 21.61 0.30 -55.26 16 22 Si 0.97 45.05 28.62 68.60 1.96 47.01 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 26 C -0.22 -10.19 9.16 22.37 0.20 -9.99 16 27 C -0.07 -2.90 8.68 22.39 0.19 -2.71 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 30 H 0.04 0.62 7.75 -2.39 -0.02 0.61 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.91 7.73 -2.39 -0.02 0.89 16 33 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.40 1.89 9.12 -74.06 -0.68 1.22 16 36 H 0.42 7.87 8.07 -92.70 -0.75 7.13 16 37 H 0.43 8.51 8.30 -92.71 -0.77 7.75 16 38 H 0.17 3.32 8.06 -2.91 -0.02 3.29 16 39 H 0.15 4.60 8.06 -2.91 -0.02 4.58 16 40 H 0.29 15.70 8.31 -92.71 -0.77 14.93 16 41 H 0.11 5.61 5.63 -2.91 -0.02 5.59 16 42 H 0.13 4.96 6.23 -2.91 -0.02 4.94 16 Total: -1.00 -73.35 362.06 0.56 -72.78 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -1.09 Total: 27.14 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 5.20 Total: -6.97 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -3.30 Total: -87.15 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -2.20 Total: -52.82 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.96 Total: 47.01 kcal Total: -73.35 0.56 -72.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048604750.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.615 kcal (2) G-P(sol) polarization free energy of solvation -73.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds